View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11484_high_4 (Length: 452)
Name: NF11484_high_4
Description: NF11484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11484_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 22 - 436
Target Start/End: Original strand, 45081917 - 45082331
Alignment:
| Q |
22 |
aatggagttcatataaaatggatcagtaaaatagtggtattattcattacttttcaaaacttaaattccttatatatactatatccttatggaagaaaat |
121 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
45081917 |
aatggcgtgcatataaaatggatcagtaaaatagtggtattattcattacttttcaaaacttagattcc----atatactatatccttatggaagaaaat |
45082012 |
T |
|
| Q |
122 |
agcatttgatgtcctaacaacaataccattaaa-ctccctcnnnnnnnnnnnnnn---caatagcattaaagttcaaattttacatccacattatcagaa |
217 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
45082013 |
agcatttgatgtcctaacaacaatagcattaaagctccctcaaaaaaaaaaaaaaaaacaatagcattaaatttcaatttttacatccacattatcagaa |
45082112 |
T |
|
| Q |
218 |
gacactactttggaagttgcaagtcttgaactgaacattttcaatgggtagtttatctgttggaaaaggacattcaatttccttctctttcagcagttca |
317 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082113 |
gacactactttggaagttgcaagtcttgaattgaacattttcaatgggtagtttatctcttggaaaaggacattcaatttccttctctttcagcagttca |
45082212 |
T |
|
| Q |
318 |
catggtttaggaaccacattacttgtaactccagaaacatcagtacaattccatggaagtttcttcttatgtgcactcatttcaatagtcacattagaaa |
417 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082213 |
catggtttaggaaccacattacttgtaactccagaaatatcagtgcaattccatggaagtttcttcttatgtgcactcatttcaatagtcacattagaaa |
45082312 |
T |
|
| Q |
418 |
cacatattccagtaaaagg |
436 |
Q |
| |
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||||||||||||||||||| |
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| T |
45082313 |
cacatattccagtaaaagg |
45082331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 178 - 436
Target Start/End: Original strand, 45077777 - 45078035
Alignment:
| Q |
178 |
atagcattaaagttcaaattttacatccacattatcagaagacactactttggaagttgcaagtcttgaactgaacattttcaatgggtagtttatctgt |
277 |
Q |
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||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||||||||| |
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| T |
45077777 |
atagcattaaaattaaaattttacatccatgttatcagaagacactactttggaagttacaagtcttgaattgaacattttcgatggctagtttatctgt |
45077876 |
T |
|
| Q |
278 |
tggaaaaggacattcaatttccttctctttcagcagttcacatggtttaggaaccacattacttgtaactccagaaacatcagtacaattccatggaagt |
377 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
45077877 |
tggaaaaggacattcaatttccttctcttgcagcaattcacatggtttaggaaccacattacttgtaactccagaaatatcagtgcaattccatggaagt |
45077976 |
T |
|
| Q |
378 |
ttcttcttatgtgcactcatttcaatagtcacattagaaacacatattccagtaaaagg |
436 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45077977 |
ttcttcttatgtgcactcatttcaatagtcacattagaaacacatattccagtaaaagg |
45078035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 218 - 436
Target Start/End: Original strand, 45074584 - 45074805
Alignment:
| Q |
218 |
gacactactttggaagttgcaagtcttgaactgaacattttcaatgggtagtttatctgttggaaaaggacattcaa---tttccttctctttcagcagt |
314 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |||||| ||||| | |
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| T |
45074584 |
gacactacttttgaagttacaagtcttgaactgaacattttcaatggtaagtttatcagttggaaaaggacattcaaatttttctttctctgccagcaat |
45074683 |
T |
|
| Q |
315 |
tcacatggtttaggaaccacattacttgtaactccagaaacatcagtacaattccatggaagtttcttcttatgtgcactcatttcaatagtcacattag |
414 |
Q |
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||||| ||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45074684 |
tcacagggtgtaggactcacattacttgtaactccagaaacatcagtgcaattccatggaagtttcttcttatgtgcactcatttcaatagtcgcattag |
45074783 |
T |
|
| Q |
415 |
aaacacatattccagtaaaagg |
436 |
Q |
| |
|
||||||| |||||||||||||| |
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| T |
45074784 |
aaacacaaattccagtaaaagg |
45074805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 200 - 417
Target Start/End: Original strand, 45067008 - 45067226
Alignment:
| Q |
200 |
acatccacattatcagaagacacta-ctttggaagttgcaagtcttgaactgaacattttcaatgggtagtttatctgttggaaaaggacattcaatttc |
298 |
Q |
| |
|
||||||| ||||||| |||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45067008 |
acatccatattatcataagacattaactttgaaagttacaagtcttgaactgaacattttcaatgggtagtttatctgttggaaaaggacattcgatttt |
45067107 |
T |
|
| Q |
299 |
cttctctttcagcagttcacatggtttaggaaccacattacttgtaactccagaaacatcagtacaattccatggaagtttcttcttatgtgcactcatt |
398 |
Q |
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||||||| ||||| |||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||| || ||||| |||||||||||| |
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| T |
45067108 |
cttctctggcagcatatcacatggtttaggaaccgcattacttgcaactccagaaacatcagtgcaattccatggaagattattcttctgtgcactcatt |
45067207 |
T |
|
| Q |
399 |
tcaatagtcacattagaaa |
417 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
45067208 |
tcaatagtcacattagaaa |
45067226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 177 - 357
Target Start/End: Original strand, 12697949 - 12698128
Alignment:
| Q |
177 |
aatagcattaaagttcaaattttacatccacattatcagaagacactactttggaagttgcaagtcttgaactgaacattttcaatgggtagtttatctg |
276 |
Q |
| |
|
|||||||||||||||||| || |||||||| ||| |||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| ||| |
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| T |
12697949 |
aatagcattaaagttcaa-ttatacatccatgttaatagaagacactactttgaaagttacaagtcttgaacagaacattttcaatgggtagtttaactg |
12698047 |
T |
|
| Q |
277 |
ttggaaaaggacattcaatttccttctctttcagcagttcacatggtttaggaaccacattacttgtaactccagaaacat |
357 |
Q |
| |
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|||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12698048 |
ttggaaaaggacattcaattcccttcgctagcagcaattcacatggtttaggaaccacgttacttgtaactccagaaacat |
12698128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 209 - 385
Target Start/End: Original strand, 34504344 - 34504520
Alignment:
| Q |
209 |
ttatcagaagacactactttggaagttgcaagtcttgaactgaacattttcaatgggtagtttatctgttggaaaaggacattcaatttccttctctttc |
308 |
Q |
| |
|
||||||||| |||||||||| | ||| ||||||||||||||||||| |||||| | | ||||||||||||||| ||||||||||||| ||||||| | |
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| T |
34504344 |
ttatcagaacacactacttttaatgttacaagtcttgaactgaacatcttcaatagccaatttatctgttggaaagggacattcaattttcttctctgac |
34504443 |
T |
|
| Q |
309 |
agcagttcacatggtttaggaaccacattacttgtaactccagaaacatcagtacaattccatggaagtttcttctt |
385 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
34504444 |
agcagatcacatggtttaggaaccacattacttgtaactccagaaacatctgtgcaattccatggaagtttcttctt |
34504520 |
T |
|
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