View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11484_high_5 (Length: 441)
Name: NF11484_high_5
Description: NF11484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11484_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 50243603 - 50243190
Alignment:
| Q |
18 |
aagaaaaataaaatccaacctgcaacgaaaatagctatgacaataagaagctcctcaaaagctccaccaactaaaactgataatcgtgcaatccctatag |
117 |
Q |
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| T |
50243603 |
aagaaaaataaaatccaacctgcaacgaaaatagctatgacaataagaagctcctcaaaagctccaccaactaaaactgataatcgtgcaatccctatag |
50243504 |
T |
|
| Q |
118 |
caagcactcctgctgaaattgttcccaaagcacgattgaaccctttgttaagggttgcacctaatctcagaaagnnnnnnnngttaactttttcattaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50243503 |
caagcactcctgctgaaattgttcccaaagcacgattgaaccctttgttaagggttgcacctaatctcagaaagaaaaaaaagttaactttttcattaaa |
50243404 |
T |
|
| Q |
218 |
caaagacatatttcaaaacnnnnnnnnnn---gaaattcacatagtatttcgttgtctgtcacaacaataataataagtaacaactatatcgccccgaca |
314 |
Q |
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| T |
50243403 |
caaagacat--ttcaaaaaaaaaaaaaagaaagaaattcacatagtatttcgttgtctgtcacaacaataataataagtaacaactatatcggcccgaca |
50243306 |
T |
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| Q |
315 |
cttgagattgaaagcatgttcaatgtctaacatgtgtaggtgtatgtgacattggcacaacaccgacatagtcattttatattggtagttgaatagaata |
414 |
Q |
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| T |
50243305 |
cttgagattgaaaacatgttcaatgtctaacatgtgtaggtgtatgtgacattggcacaacaccgacatagtcattttatattggtagttgaatagaata |
50243206 |
T |
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| Q |
415 |
gattcctacctatgct |
430 |
Q |
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| T |
50243205 |
gattcctacctatgct |
50243190 |
T |
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Back To:
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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 3963719 - 3963755
Alignment:
| Q |
311 |
gacacttgagattgaaagcatgttcaatgtctaacat |
347 |
Q |
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||||||| |||||||| |||||||||||||||||||| |
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| T |
3963719 |
gacactttagattgaaggcatgttcaatgtctaacat |
3963755 |
T |
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