View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11484_high_6 (Length: 332)
Name: NF11484_high_6
Description: NF11484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11484_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 1908821 - 1908516
Alignment:
| Q |
20 |
aaaagagccaaaatcaaacacaaatcataggatatacatgagtaacaaaccctatatataaacacattcatcaaaagctcattttctctttgtaagataa |
119 |
Q |
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| T |
1908821 |
aaaagagccaaaatcaaacacaaatcataggatatacatgagtaacaaaccctatatataaacacgttcatcaaaagctcattttctctttgtaagataa |
1908722 |
T |
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| Q |
120 |
ataattttgtacctttccttcaaccactttgtttggcactttctctccttagccttcttccctctttgtctttctaaacgaataacaaagagggtaacaa |
219 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1908721 |
ataattttgtacctttccttcaacaactttgtttggcactttctctccttagccttcttccctctttgtctttctaaacgaataacaaagagggtaacaa |
1908622 |
T |
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| Q |
220 |
acaaaaatattgtgttgttgaagagcatggaaagctttgaagaaaaagtttgtgtgtttatggatattgaatctgagctacatgcccctcttgaggacct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1908621 |
acaaaaatattgtgttgttgaagagcatggaaagctttgaagaaaaagtttgtgtgtttatggatattgaatctgagctacatgcccctcttgaggacct |
1908522 |
T |
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| Q |
320 |
atgctt |
325 |
Q |
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|||||| |
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| T |
1908521 |
atgctt |
1908516 |
T |
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