View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11484_high_7 (Length: 316)
Name: NF11484_high_7
Description: NF11484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11484_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 30091195 - 30090889
Alignment:
| Q |
1 |
aagacaaaagatgcagagtctgtgatcaagtatgcaaaaagcaataagtataatccaacagcaagcattaagtttcaacaaacatttcttggaataaagc |
100 |
Q |
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| T |
30091195 |
aagacaaaagatgcagaatctgtgatcaagtacgcaaaacgcaataagaataatccaacagcaagcattaagtttcaacaaacatttcttggaataaaac |
30091096 |
T |
|
| Q |
101 |
cagcaccaattgcagctcattaatcatcaagaggtccatcacatggctttccatggattttgaagcctgacataatggcacctgggtctagtgttcttgc |
200 |
Q |
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| T |
30091095 |
cggcaccaattgcagctcattactcatcaagaggtccatcacatggctttccttggattttgaagcctgacataatggcacctggatcaagagttctcgc |
30090996 |
T |
|
| Q |
201 |
tgcttttgttccatgtaaaccaacagctagaattggcaaaaataagtacttatcaagtgactacaatttcatgtcaggtacatccatggcttgtcctcat |
300 |
Q |
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|||||||||||| | ||||||||||||||||||||| | || || |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30090995 |
tgcttttgttccttataaaccaacagctagaattggtaccgatgtgttcttatcaagtgactacaatttcatgtcaggaacatccatggcttgtcctcat |
30090896 |
T |
|
| Q |
301 |
gcctctg |
307 |
Q |
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||||||| |
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| T |
30090895 |
gcctctg |
30090889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 301
Target Start/End: Original strand, 30099728 - 30100021
Alignment:
| Q |
5 |
caaaagatgcagagtctgtgatcaagtatgcaaaaagcaataagtataatccaacagcaagcattaagtttcaacaaacatttcttggaataaagccagc |
104 |
Q |
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||||||||||| | ||||||||||| |||||||| |||||||| ||||| ||| ||||||| || ||||||||||||||| | |||| |||||| || |
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| T |
30099728 |
caaaagatgcacaatctgtgatcaattatgcaaagagcaataac---aatcctacatcaagcatcaaatttcaacaaacatttgtaggaacaaagccggc |
30099824 |
T |
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| Q |
105 |
accaattgcagctcattaatcatcaagaggtccatcacatggctttccatggattttgaagcctgacataatggcacctgggtctagtgttcttgctgct |
204 |
Q |
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|||| |||||| |||| |||||||||||||| |||||| ||| ||||||||||||||| ||||| |||||||||||||| || || |||||||| ||| |
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| T |
30099825 |
accagctgcagcatattactcatcaagaggtccttcacatagctatccatggattttgaaacctgatataatggcacctggatcaagagttcttgcagct |
30099924 |
T |
|
| Q |
205 |
tttgttccatgtaaaccaacagctagaattggcaaaaataagtacttatcaagtgactacaatttcatgtcaggtacatccatggcttgtcctcatg |
301 |
Q |
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| T |
30099925 |
tatattcctaacaaaccaacagctagaattggcacaaatgtgttcttatcaagtgactacaatttcatgtcaggaacatccatgtcttgtcctcatg |
30100021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 208
Target Start/End: Complemental strand, 35170868 - 35170714
Alignment:
| Q |
54 |
tccaacagcaagcattaagtttcaacaaacatttcttggaataaagccagcaccaattgcagctcattaatcatcaagaggtccatcacatggctttcca |
153 |
Q |
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|||||| || ||||| || |||| ||||||||| |||||| ||||||||||||| ||| ||| |||| ||||||||||| ||| | ||| |||| |
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| T |
35170868 |
tccaactgctagcatcaattttcgacaaacattcgttggaacaaagccagcaccagctgctgcttattacagttcaagaggtccttcaaaaagctatcca |
35170769 |
T |
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| Q |
154 |
tggattttgaagcctgacataatggcacctgggtctagtgttcttgctgcttttg |
208 |
Q |
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| || || ||||||||||| ||||||||||| ||| |||||| |||||||||| |
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| T |
35170768 |
agaatcttaaagcctgacattatggcacctggttcttatgttctagctgcttttg |
35170714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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