View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11484_low_1 (Length: 716)
Name: NF11484_low_1
Description: NF11484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11484_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 5135248 - 5135004
Alignment:
| Q |
19 |
cctctccaattcacaattagggcacaccctaaactagttgaatgagtgtgcagtttggaagtcaccaaggagtaagctgcacagaagaggagtttgcaga |
118 |
Q |
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| T |
5135248 |
cctctccaattcacaattaggggt-actctaaactagttgaatgagtgtgcagtttggaagtcaccaaggagtaagctgcacagaagaggagtttgcaga |
5135150 |
T |
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| Q |
119 |
aaccatgggagacagcatcctgatactgaaatgtgattataagttgcattaggcgacgctaaaagctgaacaatctggcttcaactatgtactgagtggt |
218 |
Q |
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| T |
5135149 |
aaccatgggagacagcatcctgatactgaaatgtgattataagttgcattaggcgacgctaaaagctgaacaatctggcttcaactatgtactgagtggt |
5135050 |
T |
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| Q |
219 |
ggctaacagtgtcatagtcgtgattggggttaaaagctgcttatag |
264 |
Q |
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| T |
5135049 |
gactaacagtgtcatagtcgtgattcgggttaaaagctgcttatag |
5135004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 25 - 264
Target Start/End: Complemental strand, 5099968 - 5099736
Alignment:
| Q |
25 |
caattcacaattagggcacaccctaaactagttgaatgagtgtgcagtttggaagtcaccaaggagtaagctgcacagaagaggagtttgcagaaaccat |
124 |
Q |
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| T |
5099968 |
caattcacaattagtgcac--cctaaactagttgaatgagtgtgcggtttggaagccaccaagggg--------------gaggagtttgcagaaaccat |
5099885 |
T |
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| Q |
125 |
gggagacagcatc---ctgatactgaaatgtgat------tataagttgcattaggcgacgctaaaagctgaacaatctggcttcaactatgtactgagt |
215 |
Q |
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| T |
5099884 |
gggaggcagcatcatcctgatactgaaatgtgatgcgtattataagttgtattaggcgacgctaaaagctgaataatctggcttcaactatgtacttagt |
5099785 |
T |
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| Q |
216 |
ggtggctaacagtgtcatagtcgtgattggggttaaaagctgcttatag |
264 |
Q |
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| T |
5099784 |
ggtggctaacagtgtcatagtcgtgattcgggttaaaagctgcttatag |
5099736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 22 - 262
Target Start/End: Original strand, 5057890 - 5058132
Alignment:
| Q |
22 |
ctccaattcacaattagggcacaccctaaactagttgaatgagtgtgcagtttggaagtcaccaaggagtaagctgcacagaagaggagtttgcagaaac |
121 |
Q |
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| T |
5057890 |
ctccaattcacaattagggcacaccctaaactagttgaatgagtgtgcagtttggaagccaccaagaagtaggctgcac----------tttgcagaaac |
5057979 |
T |
|
| Q |
122 |
catgggagacagcatcctgatactgaaatgtg------attataagttg-------cattaggcgacgctaaaagctgaacaatctggcttcaactatgt |
208 |
Q |
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|||||| | ||||||||||||||||||||||| ||||||||| | ||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
5057980 |
catgggtggcagcatcctgatactgaaatgtgctgcatattataagtcgcctgtcacattaggtgacgataaaagctgaacaatctggcttcaactatgt |
5058079 |
T |
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| Q |
209 |
actgagtggtggctaacagtgtcatagtcgtgattggggttaaaagctgcttat |
262 |
Q |
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| | |||||||||||||||||||||| |||||| ||| ||| |||||||||||| |
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| T |
5058080 |
atttagtggtggctaacagtgtcataatcgtgactggagtt-aaagctgcttat |
5058132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 261 - 375
Target Start/End: Original strand, 30975250 - 30975364
Alignment:
| Q |
261 |
atagttggtatcattcaaatgagattaatgagaataaaacagagaaaaaatgaataatagaatcgccaaacattactttaaatctcaggcaaccagtgac |
360 |
Q |
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||||||||||||||||||||||||||||||| |||||| || ||||||||||||||| ||||| | ||| |||||||||||||| |||||||||||||| |
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| T |
30975250 |
atagttggtatcattcaaatgagattaatgaaaataaagcaaagaaaaaatgaataacagaataactaaaaattactttaaatctaaggcaaccagtgac |
30975349 |
T |
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| Q |
361 |
atcaaatttcgaagg |
375 |
Q |
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|||||||||| |||| |
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| T |
30975350 |
atcaaatttcaaagg |
30975364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 30975414 - 30975456
Alignment:
| Q |
391 |
actctcaattattcaaaatagccaaccaactatacacactata |
433 |
Q |
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|||| ||||| ||||||||||||||||||||||||||| |||| |
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| T |
30975414 |
actcacaattgttcaaaatagccaaccaactatacacattata |
30975456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 19909688 - 19909626
Alignment:
| Q |
261 |
atagttggtatcattcaaatgagattaatgagaataaaacagagaaaaaatgaataatagaat |
323 |
Q |
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| T |
19909688 |
atagttggtatcattcaaatgagattaatgagaataaagcaaagaaaaaatgaataacagaat |
19909626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 598 - 671
Target Start/End: Complemental strand, 25569341 - 25569268
Alignment:
| Q |
598 |
ccccagcactcaattaatttacacatgaaatctgtaatccactgtctgaaactatatttgatcgatccacaaca |
671 |
Q |
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||||||||||| | |||| |||||| ||||| || |||||||||||||||||||||||||||| |||||||||| |
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| T |
25569341 |
ccccagcactccactaatctacacaagaaatttgcaatccactgtctgaaactatatttgatcaatccacaaca |
25569268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 15856545 - 15856587
Alignment:
| Q |
391 |
actctcaattattcaaaatagccaaccaactatacacactata |
433 |
Q |
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|||| ||||| ||||||||||||||||||||||||||| |||| |
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| T |
15856545 |
actcacaattgttcaaaatagccaaccaactatacacattata |
15856587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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