View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11484_low_10 (Length: 283)
Name: NF11484_low_10
Description: NF11484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11484_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 14812322 - 14812589
Alignment:
| Q |
1 |
agaacctgaaaaattagttttggatcatcgcctagcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccatta |
100 |
Q |
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| T |
14812322 |
agaacctgaaaaattagttttggatcatcgcctagcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccatta |
14812421 |
T |
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| Q |
101 |
tctctaatagtgcaaatttgtaaccacatactcttttgagtttaacagcgagacttctctctatatcttcagatattgttttccctaacaaaagcctctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14812422 |
tctctaatagtgcaaatttgtaaccacatactcttttgagtttaacagcgagacttctctctatatcttcagatattgttttcccaaacaaaagcctctt |
14812521 |
T |
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| Q |
201 |
tgcaaggtgctttttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcatca |
268 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812522 |
tggaaggtgctttttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcatca |
14812589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 15259317 - 15259584
Alignment:
| Q |
1 |
agaacctgaaaaattagttttggatcatcgcctagcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccatta |
100 |
Q |
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|||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259317 |
agaacctgaaaatttagttttggatcatctccttgcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccatta |
15259416 |
T |
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| Q |
101 |
tctctaatagtgcaaatttgtaaccacatactcttttgagtttaacagcgagacttctctctatatcttcagatattgttttccctaacaaaagcctctt |
200 |
Q |
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| T |
15259417 |
tctctaatagtgcaaatttgtaaccacatactcttttgagtttaacagcgagatttctctctatatcttcagatattgtttttccaaacaaaagcctctt |
15259516 |
T |
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| Q |
201 |
tgcaaggtgctttttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcatca |
268 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259517 |
tgtaaggtgctttttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcatca |
15259584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 14804915 - 14805009
Alignment:
| Q |
14 |
ttagttttggatcatcgcctagcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaat |
108 |
Q |
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||||||| |||||||| | ||||| |||||||||||||||||| ||||||||| |||||||||||||||| |||| ||||||| |||||||| |
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| T |
14804915 |
ttagtttaggatcatcacttagctcagcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtatcagcaaccattgtctctaat |
14805009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 15251909 - 15252003
Alignment:
| Q |
14 |
ttagttttggatcatcgcctagcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaat |
108 |
Q |
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||||||| |||||||| | ||||| |||||||||||||||||| ||||||||| |||||||||||||||| |||| ||||||| |||||||| |
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| T |
15251909 |
ttagtttaggatcatcacttagctcagcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtatcagcaaccattgtctctaat |
15252003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 17521858 - 17521594
Alignment:
| Q |
1 |
agaacctgaaaaattagttttggatcatcgcctagcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccatta |
100 |
Q |
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|
|||||||||||| |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521858 |
agaacctgaaaacttagttttggatcatcacctcgctcagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccatta |
17521759 |
T |
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| Q |
101 |
tctctaatagtgcaaatttgtaaccacatactcttttgagtttaacagcgagacttctctctatatcttcagatattgttttccctaacaaaagcctctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
17521758 |
tctctaatagtgcaaatttgtaaccacatactcttttgagtttaacagcgagatttctctctatatcttcagatattgttttgccaaacaaaagcctctt |
17521659 |
T |
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| Q |
201 |
tgcaaggtgctttttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatca |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521658 |
tgcaaggtgctttttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatca |
17521594 |
T |
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