View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11484_low_2 (Length: 606)
Name: NF11484_low_2
Description: NF11484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11484_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 546; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 1 - 599
Target Start/End: Complemental strand, 37291701 - 37291106
Alignment:
| Q |
1 |
tgtggagagttggacaaggaaaaccatttgcagcaaaaaactgcatcgaatcaagtgtcacgctatgtataatataatttgagcttaaaatatatatgat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37291701 |
tgtggagagttggacaaggaaaaccatttgcagcaaaaaactgcatcgaatcaagtgtcacgctatgtataatataatttgagcttaaaatatatatgat |
37291602 |
T |
|
| Q |
101 |
acattaatgttaaagtgtaagacatggagttggtacaaaattaatatgataaacagaactattaaattagaaagaatcaaaaatttaaaattaacatgta |
200 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37291601 |
acattaatgttaaagtgtaagacatgaggttggtacaaaattaatatgataaacagaactattaaattagaaagaataaaaaatttaaaattaacatgta |
37291502 |
T |
|
| Q |
201 |
cnnnnnnnnataagggatttagttcctaacctgatttgcatcataggctggaccaaaatagacagcttcaccagaagacagaagacaaaggtcatgaaaa |
300 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37291501 |
cttttt---ataagggatttagttcctaacctgatttgcatcataggctggaccaaaatagacagcttcaccagaagacagaagacaaaggtcatgaaaa |
37291405 |
T |
|
| Q |
301 |
agttcaaaaagttcactgctaggttgatggatagatacaacaatagtcctttgaattccgtcccttaaattcaaacgtgcaattccactcataacatagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37291404 |
agttcaaaaagttcactgctaggttgatggatggatacaacaatagtcctttgaattccgtcccttaaattcaaacgtgcaattccactcataacatagt |
37291305 |
T |
|
| Q |
401 |
aggaagctgcactatcaagtccgctagtcggttcatcaaggaagagaagtctcgggcgcgttagaatctcgatgcaaatgctaagtcttctcctttgtcc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37291304 |
aggaagctgcactatcaagtccgctagtcggttcatcaaggaagagaagtctcgggcgcgttagaatctcgatgcaaatgctaagtcttctcctttgtcc |
37291205 |
T |
|
| Q |
501 |
tccacttagacctttagaaccccatcctccaacccttgtgttaacagcttctattagtcccatttctcgaagtataagatcagcttgttccttcatctc |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
37291204 |
tccacttagacctttagaaccccatcctccaacccttgtgttaacagcttctattagtcccatttctcggagtataagatcagcttgttccttcttctc |
37291106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 223 - 544
Target Start/End: Complemental strand, 37298600 - 37298279
Alignment:
| Q |
223 |
ttcctaacctgatttgcatcataggctggaccaaaatagacagcttcaccagaagacagaagacaaaggtcatgaaaaagttcaaaaagttcactgctag |
322 |
Q |
| |
|
||||||||||||||||| ||| | |||| ||||||||| || | || ||||| || |||||||| ||||||| |||||||| ||||| |||||| |||| |
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|
| T |
37298600 |
ttcctaacctgatttgcttcagatgctgtaccaaaatataccgtctccccagaggaaagaagacagaggtcatcaaaaagttgaaaaacttcactactag |
37298501 |
T |
|
| Q |
323 |
gttgatggatagatacaacaatagtcctttgaattccgtcccttaaattcaaacgtgcaattccactcataacatagtaggaagctgcactatcaagtcc |
422 |
Q |
| |
|
| ||||| || ||| ||||||| ||||||||||| | ||||||| | | |||| ||| || | ||||||||||||||||||||||||||||||||||| |
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| T |
37298500 |
gctgatgtatggatgcaacaattgtcctttgaatatcatcccttagacttaaacttgcgatcctgctcataacatagtaggaagctgcactatcaagtcc |
37298401 |
T |
|
| Q |
423 |
gctagtcggttcatcaaggaagagaagtctcgggcgcgttagaatctcgatgcaaatgctaagtcttctcctttgtcctccacttagacctttagaaccc |
522 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||| | ||||||||||| ||||||||||| ||||| || ||||| || || ||||| ||||| ||||| |
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| T |
37298400 |
actagttggttcatcaaggaaaagaagtctagggtgagttagaatctcaatgcaaatgcttagtctccttctttgccccccgcttaggcctttggaacca |
37298301 |
T |
|
| Q |
523 |
catcctccaacccttgtgttaa |
544 |
Q |
| |
|
| ||||||||||||||||||| |
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|
| T |
37298300 |
taccctccaacccttgtgttaa |
37298279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 274 - 542
Target Start/End: Complemental strand, 37330866 - 37330598
Alignment:
| Q |
274 |
gaagacagaagacaaaggtcatgaaaaagttcaaaaagttcactgctaggttgatggatagatacaacaatagtcctttgaattccgtcccttaaattca |
373 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||||| |||| | |||||||||||||| ||| || ||| |||||||||||||| ||| || | || |
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|
| T |
37330866 |
gaagacagaagacaaaggttatgaaagagttgaaaaacttcagtactaggttgatggatggatgtaataattgtcctttgaattccatcctttttgtcca |
37330767 |
T |
|
| Q |
374 |
aacgtgcaattccactcataacatagtaggaagctgcactatcaagtccgctagtcggttcatcaaggaagagaagtctcgggcgcgttagaatctcgat |
473 |
Q |
| |
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| ||||||| ||||||||||||| ||||| |||||||||||||| ||||| || |||||||| || |||||||| || || ||||| ||||| || |
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| T |
37330766 |
aggaagcaattcttttcataacatagtaagaagcagcactatcaagtccactagttggctcatcaagaaaaagaagtctaggacgtgttaggatctcaat |
37330667 |
T |
|
| Q |
474 |
gcaaatgctaagtcttctcctttgtcctccacttagacctttagaaccccatcctccaacccttgtgtt |
542 |
Q |
| |
|
||||||||||| ||| || |||| || ||||||| ||||| |||||| ||||||| |||||||| |
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|
| T |
37330666 |
gcaaatgctaactctccttttttgacccccacttatgcctttcacaccccaccctccaattcttgtgtt |
37330598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 274 - 542
Target Start/End: Complemental strand, 37321944 - 37321676
Alignment:
| Q |
274 |
gaagacagaagacaaaggtcatgaaaaagttcaaaaagttcactgctaggttgatggatagatacaacaatagtcctttgaattccgtcccttaaattca |
373 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| ||||| |||| | |||||||||||||| ||| || ||||||||| ||||||| || | || || |
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| T |
37321944 |
gaagacagaagacataggttatgaaaaagttgaaaaacttcagtactaggttgatggatggatgtaataatagtcctccgaattccatctttatgatcca |
37321845 |
T |
|
| Q |
374 |
aacgtgcaattccactcataacatagtaggaagctgcactatcaagtccgctagtcggttcatcaaggaagagaagtctcgggcgcgttagaatctcgat |
473 |
Q |
| |
|
|| ||||||| ||||||||||||| ||||| |||||||||||||| ||||| || |||||||| || |||||||| || || ||||| ||||| || |
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|
| T |
37321844 |
aagtagcaattcttttcataacatagtaagaagcagcactatcaagtccactagttggctcatcaagaaatagaagtctaggacgtgttaggatctcaat |
37321745 |
T |
|
| Q |
474 |
gcaaatgctaagtcttctcctttgtcctccacttagacctttagaaccccatcctccaacccttgtgtt |
542 |
Q |
| |
|
||||||||||| ||| || |||| || ||||||| ||||| |||||| ||||||| |||||||| |
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|
| T |
37321744 |
gcaaatgctaactctccttttttgacccccacttatgcctttcacaccccaccctccaattcttgtgtt |
37321676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 270 - 530
Target Start/End: Original strand, 37346735 - 37346995
Alignment:
| Q |
270 |
accagaagacagaagacaaaggtcatgaaaaagttcaaaaagttcactgctaggttgatggatagatacaacaatagtcctttgaattccgtcccttaaa |
369 |
Q |
| |
|
||||||||||| ||||||||| | ||| ||||||| ||||| |||| | || ||||||||||| || ||||||| |||||||||||||| ||| || |
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|
| T |
37346735 |
accagaagacaaaagacaaagattatggaaaagttgaaaaacttcagtacttggttgatggattgaggcaacaatggtcctttgaattccatcctttttg |
37346834 |
T |
|
| Q |
370 |
ttcaaacgtgcaattccactcataacatagtaggaagctgcactatcaagtccgctagtcggttcatcaaggaagagaagtctcgggcgcgttagaatct |
469 |
Q |
| |
|
| ||| || |||| ||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| || |||||||| || || || ||||||| |
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|
| T |
37346835 |
tccaaggaagctattcttttcataacatagtaagaagcagcactatcaagtccactagttggttcatcaagaaatagaagtcttggacgtgtaagaatct |
37346934 |
T |
|
| Q |
470 |
cgatgcaaatgctaagtcttctcctttgtcctccacttagacctttagaaccccatcctcc |
530 |
Q |
| |
|
| ||| ||||||||| ||| || |||| || ||||||| |||||| |||||| ||||| |
|
|
| T |
37346935 |
caatggaaatgctaactctccttttttgacccccacttattcctttaacaccccaccctcc |
37346995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 389 - 532
Target Start/End: Original strand, 19544689 - 19544832
Alignment:
| Q |
389 |
tcataacatagtaggaagctgcactatcaagtccgctagtcggttcatcaaggaagagaagtctcgggcgcgttagaatctcgatgcaaatgctaagtct |
488 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| || || ||||||||||| || |||||| | || || || || ||||| ||||||||||||| ||| |
|
|
| T |
19544689 |
tcataacatagtaagaagcagcactatcaagtccacttgttggttcatcaagaaaaagaagttttggacgtgtaaggatctcaatgcaaatgctaactct |
19544788 |
T |
|
| Q |
489 |
tctcctttgtcctccacttagacctttagaaccccatcctccaa |
532 |
Q |
| |
|
|| | || |||||||||| |||||| |||||||||||||| |
|
|
| T |
19544789 |
ccttttctgacctccacttatgcctttaacaccccatcctccaa |
19544832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 37298703 - 37298652
Alignment:
| Q |
7 |
gagttggacaaggaaaaccatttgcagcaaaaaactgcatcgaatcaagtgt |
58 |
Q |
| |
|
||||||| ||||| |||||||||| |||||||| |||||| ||||||||||| |
|
|
| T |
37298703 |
gagttgggcaagggaaaccatttgaagcaaaaacctgcattgaatcaagtgt |
37298652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 13081912 - 13081960
Alignment:
| Q |
105 |
taatgttaaagtgtaagacatggagttggtacaaaattaatatgataaa |
153 |
Q |
| |
|
||||||||||||| || |||| ||||||||||| |||||||||||||| |
|
|
| T |
13081912 |
taatgttaaagtggaacacataaagttggtacaatattaatatgataaa |
13081960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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