View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11484_low_3 (Length: 602)

Name: NF11484_low_3
Description: NF11484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11484_low_3
NF11484_low_3
[»] chr1 (7 HSPs)
chr1 (229-535)||(50361160-50361464)
chr1 (8-232)||(50352586-50352810)
chr1 (491-600)||(12605137-12605246)
chr1 (350-401)||(46567819-46567870)
chr1 (420-470)||(12605270-12605320)
chr1 (517-602)||(52590133-52590219)
chr1 (568-602)||(50361464-50361498)
[»] chr3 (2 HSPs)
chr3 (491-600)||(30998013-30998122)
chr3 (415-470)||(30998147-30998202)
[»] chr2 (2 HSPs)
chr2 (491-600)||(10451663-10451772)
chr2 (415-470)||(10451585-10451640)
[»] chr5 (1 HSPs)
chr5 (347-401)||(43468375-43468429)
[»] chr7 (1 HSPs)
chr7 (347-401)||(10644881-10644935)
[»] chr4 (1 HSPs)
chr4 (347-401)||(23536989-23537043)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 229 - 535
Target Start/End: Original strand, 50361160 - 50361464
Alignment:
Q  229 ccacaattaattatgcagactatttatcattacattttttgtcagattactcattgagtagtagtagtagctaaaacatgtgaaaatgcatacctgctgc 328  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  50361160 ccacaattaattatgcagactatttatcattaccttttttgtcagattactcattgagta---gtagtagctaaaacatgtgaaaatgcatacctgctgc 50361256  T
Q  329 ggctcatattaaggctataataggggtttcccattcatattgatcaccatttctagcaggcctcttttactctctttcttcaatcagtttttgtgaattg 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50361257 ggctcatattaaggctataataggggtttcccattcatattgatcaccatttatagcaggcctcttttactctctttcttcaatcagtttttgtgaattg 50361356  T
Q  429 ttcctgagcttatcaactttaatctatatgcatttctttagatgnnnnnnnnnnnnnnnnncgac-tttaacttttgcatatcttaacagctctataaag 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||                 |||| ||||||||||||||||||||||||||||||||||    
T  50361357 ttcctgagcttatcaactttaatctatatgcatttctttagatgtttttttattttattttcgacttttaacttttgcatatcttaacagctctataaag 50361456  T
Q  528 aactacta 535  Q
    ||||||||    
T  50361457 aactacta 50361464  T

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Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 50352586 - 50352810
Alignment:
Q  8 tggacatcattgcaaaaacagattggttgaaacgatctaagttctaacctctaaatnnnnnnnggtttgatggtttcccataatccacctctttccacac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||| |||    
T  50352586 tggacatcattgcaaaaacagattggttgaaacgatctaagttctaacctctaaataaaaaaaggtttgatggtttcccataatccacctctttccgcac 50352685  T
Q  108 ctcatttgcggcattacacatgaaaaacatgtgcttctctttctcccccaaggaaatacttttgcgacaatcttacgcgagtaaggcaacactccacaga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50352686 ctcatttgcggcattacacatgaaaaacatgtgcttctctttctcctccaaggaaatacttttgcgacaatcttacgcgagtaaggcaacactccacaga 50352785  T
Q  208 gatactttttagaactgagttccac 232  Q
    |||||||||||||||||||||||||    
T  50352786 gatactttttagaactgagttccac 50352810  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 491 - 600
Target Start/End: Complemental strand, 12605246 - 12605137
Alignment:
Q  491 gactttaacttttgcatatcttaacagctctataaagaactactatctctcttcattgcttcattaagagtcgcatcaaaatatgttaatggtgttgaat 590  Q
    |||||||| ||||||||| |||||| |||||||||||||||||||||| |||||| ||| ||||||||||| |||||||||||  || ||||||||||||    
T  12605246 gactttaatttttgcataacttaactgctctataaagaactactatctatcttcactgcctcattaagagttgcatcaaaatacctttatggtgttgaat 12605147  T
Q  591 attgttcagt 600  Q
    ||||||||||    
T  12605146 attgttcagt 12605137  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 350 - 401
Target Start/End: Original strand, 46567819 - 46567870
Alignment:
Q  350 aggggtttcccattcatattgatcaccatttctagcaggcctcttttactct 401  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  46567819 aggggtttcccattcatattgatcaccatttatagcagacctcttttactct 46567870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 420 - 470
Target Start/End: Complemental strand, 12605320 - 12605270
Alignment:
Q  420 tgtgaattgttcctgagcttatcaactttaatctatatgcatttctttaga 470  Q
    |||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  12605320 tgtgaattcttcctgagcttatcaactttaattcatatgcatttctttaga 12605270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 517 - 602
Target Start/End: Original strand, 52590133 - 52590219
Alignment:
Q  517 gctctataaagaactactatctctcttcattgcttcat-taagagtcgcatcaaaatatgttaatggtgttgaatattgttcagtac 602  Q
    ||||||||||||| || |||||||||||  |||||||  ||||||| |||||||||||| ||||||||| || |||||||| |||||    
T  52590133 gctctataaagaattattatctctcttccctgcttcaaataagagttgcatcaaaatatcttaatggtgctggatattgtttagtac 52590219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 568 - 602
Target Start/End: Original strand, 50361464 - 50361498
Alignment:
Q  568 aaaatatgttaatggtgttgaatattgttcagtac 602  Q
    |||||||||||||||||||||||||||||||||||    
T  50361464 aaaatatgttaatggtgttgaatattgttcagtac 50361498  T

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Target: chr3 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 491 - 600
Target Start/End: Complemental strand, 30998122 - 30998013
Alignment:
Q  491 gactttaacttttgcatatcttaacagctctataaagaactactatctctcttcattgcttcattaagagtcgcatcaaaatatgttaatggtgttgaat 590  Q
    |||||||| ||||||||| |||||| |||||||||||||||||||||| |||||| ||  ||||||||||| |||||||||||  || ||||||||||||    
T  30998122 gactttaatttttgcataacttaactgctctataaagaactactatctatcttcactgtctcattaagagttgcatcaaaatacctttatggtgttgaat 30998023  T
Q  591 attgttcagt 600  Q
    ||||||||||    
T  30998022 attgttcagt 30998013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 415 - 470
Target Start/End: Complemental strand, 30998202 - 30998147
Alignment:
Q  415 gtttttgtgaattgttcctgagcttatcaactttaatctatatgcatttctttaga 470  Q
    |||| |||||||| ||||| |||||||||||||||||  |||||||||||||||||    
T  30998202 gtttgtgtgaattcttcctcagcttatcaactttaattcatatgcatttctttaga 30998147  T

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Target: chr2 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 491 - 600
Target Start/End: Original strand, 10451663 - 10451772
Alignment:
Q  491 gactttaacttttgcatatcttaacagctctataaagaactactatctctcttcattgcttcattaagagtcgcatcaaaatatgttaatggtgttgaat 590  Q
    |||||||| ||||||||| |||||| |||||||||||||||||||||| |||||| ||  ||||||||||| |||||||||||  || ||||||||||||    
T  10451663 gactttaatttttgcataacttaactgctctataaagaactactatctatcttcactgtctcattaagagttgcatcaaaatacctttatggtgttgaat 10451762  T
Q  591 attgttcagt 600  Q
    ||||||||||    
T  10451763 attgttcagt 10451772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 415 - 470
Target Start/End: Original strand, 10451585 - 10451640
Alignment:
Q  415 gtttttgtgaattgttcctgagcttatcaactttaatctatatgcatttctttaga 470  Q
    |||| |||||||| ||| |||||||||||||||||||  |||||||||||||||||    
T  10451585 gtttgtgtgaattcttcatgagcttatcaactttaattcatatgcatttctttaga 10451640  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 43468429 - 43468375
Alignment:
Q  347 aataggggtttcccattcatattgatcaccatttctagcaggcctcttttactct 401  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  43468429 aataggggtttcccattcatattgatcaccatttatagcagacctcttttactct 43468375  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 10644935 - 10644881
Alignment:
Q  347 aataggggtttcccattcatattgatcaccatttctagcaggcctcttttactct 401  Q
    |||||||||||||||||||||||||||||||||| ||| || |||||||||||||    
T  10644935 aataggggtttcccattcatattgatcaccatttatagtagacctcttttactct 10644881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 23537043 - 23536989
Alignment:
Q  347 aataggggtttcccattcatattgatcaccatttctagcaggcctcttttactct 401  Q
    |||||||||||||||||||||||||||||||||| ||| || |||||||||||||    
T  23537043 aataggggtttcccattcatattgatcaccatttatagtagacctcttttactct 23536989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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