View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11484_low_4 (Length: 494)
Name: NF11484_low_4
Description: NF11484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11484_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 11 - 479
Target Start/End: Original strand, 1331622 - 1332093
Alignment:
| Q |
11 |
cacagagagggtcaaatcttgtttcctaaaggccgaatcctctaggatcaagtcatgttttctcatgtttttctcattgtaaaaattatttatgctatat |
110 |
Q |
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| T |
1331622 |
cacagagagggtcaaatcttgtttcctaaaggcggaatcctctaggatcaagtcatgttttctcatgtttttctcattgtaaaaattatttatgctatat |
1331721 |
T |
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| Q |
111 |
cattgtatatctatcaaactctaaagtttaaaactcttttgaatatatttatttgaagttatctgttaaatttccnnnnnnnnnnnnnnnnnnccacaga |
210 |
Q |
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| T |
1331722 |
cattgtatatctatcaaactctaaagtttaaaactcttttgaatatatttatttgaagttatctgttaaatttcctttttgtttttggtttttccacaga |
1331821 |
T |
|
| Q |
211 |
aacttccttcatgtttggtgtaagcaaccaagagggaagtggggactgggaagaatacagtcaacttcaggagtacaagcatcagtttcactctcaaatg |
310 |
Q |
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| T |
1331822 |
aacttccttcatgtttggtgtaagcaaccaagagggaagtggggactgggaagaatacagtcaacttcaggagtacaagcatcagtttcactctcaaatg |
1331921 |
T |
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| Q |
311 |
gaaatgtaaacttttaaattttgtgtctttataagatag---tattcattgttgagtatgcaagataacatgctatttatgttgataagttgttgctgca |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1331922 |
gaaatgtaaacttttaaattttgtgtctttataagatagtactattcattgttgagtatgcaagataacatgctatttatgttgataagttgttgctgca |
1332021 |
T |
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| Q |
408 |
ggttatgagagtggcacgaacagatctcttgccagctaatcctgatattttagagtgtgtggatgatcttat |
479 |
Q |
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| T |
1332022 |
ggttatgagagtggcacaaacagatctcttgccagctaatcctgatattttagagtgtgtggatgatcttat |
1332093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 217 - 479
Target Start/End: Original strand, 33970334 - 33970594
Alignment:
| Q |
217 |
cttcatgtttggtgtaagcaaccaagagggaagtggggactgggaagaatacagtcaacttcaggagtacaagcatcagtttcactctcaaatggaaatg |
316 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
33970334 |
cttcatgtttggtgtaggcaaccaagagggaagtggggactgggaagaatacaatcaacttctggagaacaagcatcagtttcactctcaaatggaaatg |
33970433 |
T |
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| Q |
317 |
taaacttttaaattttgtgtctttataagatagtattcattgttgagtatgcaagataacatgctatttatgttgataagttgttgctgcaggttatgag |
416 |
Q |
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||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
33970434 |
taaacttctaaattttgt--ctttataagatagtcttcattgttgagtatgcaagataacatgctatttgtgttgatgagttgttgctgcaggttatgaa |
33970531 |
T |
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| Q |
417 |
agtggcacgaacagatctcttgccagctaatcctgatattttagagtgtgtggatgatcttat |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
33970532 |
agtggcacgaacagatctcttgccagctaatcctgatattttagagggcgtggatgatcttat |
33970594 |
T |
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