View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11485_high_11 (Length: 372)
Name: NF11485_high_11
Description: NF11485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11485_high_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 372
Target Start/End: Original strand, 23336572 - 23336921
Alignment:
| Q |
8 |
gagcagagactattttttattaaagttttggtttggaatttgtgattttgtaggacgaagttaaagcaaacagaagtggattgtgagtatttgaagagat |
107 |
Q |
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| T |
23336572 |
gagcagagactattttttattaaagttttggtttggaatttgtgattttgtaggacaaagttaaagcaaacagaagtggattgtgagtatttgaagagat |
23336671 |
T |
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| Q |
108 |
gttgtgagacattaacagaagagaatagaagattacaaaaagaacttcaagaacttagagctttgaaaactactcaaccattctacatgcaacttccagc |
207 |
Q |
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| T |
23336672 |
gttgtgagacattaacagaagagaatagaagattacaaaaggaacttcaagagcttagagctttgaaaactactcaaccattctacatgcaacttccagc |
23336771 |
T |
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| Q |
208 |
taccactctcactatgtgtccttcttgtgaacgtgtagctacaaacccttgcaacaaccaaacaaacaccaacaagtcaagattctctaatgctcaagcc |
307 |
Q |
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| T |
23336772 |
taccactctcactatgtgtccttcttgtgaacgtgtagctacaaacccttgcaacaaccaaacaaacaccaacaagtcaagattctctaatgctcaa--- |
23336868 |
T |
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| Q |
308 |
caagcccatcaggcccaagcccaagcccatcagatttcttcatgaccttataatcttatatgatc |
372 |
Q |
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| T |
23336869 |
------------gcccaagcccaagcccatcagatttcttcatgaccttataatcttatatgatc |
23336921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 59 - 238
Target Start/End: Original strand, 37140605 - 37140784
Alignment:
| Q |
59 |
aggacgaagttaaagcaaacagaagtggattgtgagtatttgaagagatgttgtgagacattaacagaagagaatagaagattacaaaaagaacttcaag |
158 |
Q |
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| T |
37140605 |
aggaccaagtcaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctgacagaagaaaataaaagattacaaaaggaacttcagg |
37140704 |
T |
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| Q |
159 |
aacttagagctttgaaaactactcaaccattctacatgcaacttccagctaccactctcactatgtgtccttcttgtgaa |
238 |
Q |
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| T |
37140705 |
aattgagagctttgaaaacttctcaaccattctacatgcaacttccagctaccactctcactatgtgtccttcttgtgaa |
37140784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 59 - 252
Target Start/End: Complemental strand, 25901716 - 25901523
Alignment:
| Q |
59 |
aggacgaagttaaagcaaacagaagtggattgtgagtatttgaagagatgttgtgagacattaacagaagagaatagaagattacaaaaagaacttcaag |
158 |
Q |
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| T |
25901716 |
aggactaagttgaagcaaacagaagtggattgtgaatacttaaagagatgctgtgaaacactaacagaagaaaataggaggctacacaaggaacttcaag |
25901617 |
T |
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| Q |
159 |
aacttagagctttgaaaactactcaaccattctacatgcaacttccagctaccactctcactatgtgtccttcttgtgaacgtgtagctacaaa |
252 |
Q |
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| T |
25901616 |
aattaagagctttaaaaacttcaaatccattcaacatgcaattaccagcaactactttaactatgtgcccttcttgtgaacgtgttgcaacaaa |
25901523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 59 - 174
Target Start/End: Original strand, 891120 - 891235
Alignment:
| Q |
59 |
aggacgaagttaaagcaaacagaagtggattgtgagtatttgaagagatgttgtgagacattaacagaagagaatagaagattacaaaaagaacttcaag |
158 |
Q |
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| T |
891120 |
aggaccaagttgaagcaaactgaagtggattgtgagtacttgaagagatgctgtgagactctaactgatgagaataggaggttgcaaaaggaagtgcaag |
891219 |
T |
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| Q |
159 |
aacttagagctttgaa |
174 |
Q |
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| T |
891220 |
agcttagggcattgaa |
891235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 40300320 - 40300384
Alignment:
| Q |
71 |
aagcaaacagaagtggattgtgagtatttgaagagatgttgtgagacattaacagaagagaatag |
135 |
Q |
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| T |
40300320 |
aagcaaacagaagtggattgtgagttcctaaagaaatgttgtgaaacattaacagaagagaatag |
40300384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 4059101 - 4059158
Alignment:
| Q |
59 |
aggacgaagttaaagcaaacagaagtggattgtgagtatttgaagagatgttgtgaga |
116 |
Q |
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| T |
4059101 |
aggactaagttgaagcaaacagaggtagattgtgaatttttgaaaagatgttgtgaga |
4059158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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