View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11485_high_15 (Length: 308)

Name: NF11485_high_15
Description: NF11485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11485_high_15
NF11485_high_15
[»] chr1 (6 HSPs)
chr1 (1-290)||(41199912-41200201)
chr1 (82-290)||(1041600-1041812)
chr1 (82-290)||(41192665-41192877)
chr1 (1-255)||(41407385-41407634)
chr1 (1-45)||(1041836-1041880)
chr1 (1-45)||(41192901-41192945)
[»] chr2 (2 HSPs)
chr2 (82-290)||(33323191-33323403)
chr2 (1-45)||(33323427-33323471)
[»] scaffold0271 (1 HSPs)
scaffold0271 (1-255)||(23864-24113)
[»] scaffold0640 (1 HSPs)
scaffold0640 (82-255)||(3379-3549)
[»] chr6 (1 HSPs)
chr6 (164-288)||(16700352-16700472)
[»] chr3 (1 HSPs)
chr3 (85-224)||(12001799-12001938)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 41200201 - 41199912
Alignment:
Q  1 taaaattgatgtcctttgaaaacaagtaggtccatccacttccaaattctaacttaggcttcttcaactaaatannnnnnncctgcaaattgcatctagt 100  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  41200201 taaaattgatgtcctttgaaaataagtaggtccttccacttccaaattctaacttaggcttcttcaactaaatatttttttcctgcaaattgcatctagt 41200102  T
Q  101 ttcaagacaactaaatgtccatattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41200101 ttcaagacaactaaatgtccatattgctgaaaactataaattttgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaa 41200002  T
Q  201 gaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttcc 290  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41200001 gaatgaatcgtgtgatatgcatttattacgcaaaacatatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttcc 41199912  T

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Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 82 - 290
Target Start/End: Complemental strand, 1041812 - 1041600
Alignment:
Q  82 cctgcaaattgcatctagtttcaagacaactaaatgtccatat----tgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaagg 177  Q
    |||||||||||||||||||||||||||||||||||||||||||    ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1041812 cctgcaaattgcatctagtttcaagacaactaaatgtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaagg 1041713  T
Q  178 cagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagt 277  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1041712 cagtcccaaatactgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtagt 1041613  T
Q  278 atcctcctgttcc 290  Q
    |||||||||||||    
T  1041612 atcctcctgttcc 1041600  T

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Target: chr1; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 82 - 290
Target Start/End: Complemental strand, 41192877 - 41192665
Alignment:
Q  82 cctgcaaattgcatctagtttcaagacaactaaatgtccatat----tgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaagg 177  Q
    |||||||||||||||||||||||||||||||||||||||||||    ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41192877 cctgcaaattgcatctagtttcaagacaactaaatgtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaagg 41192778  T
Q  178 cagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagt 277  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41192777 cagtcccaaatactgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtagt 41192678  T
Q  278 atcctcctgttcc 290  Q
    |||||||||||||    
T  41192677 atcctcctgttcc 41192665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 41407634 - 41407385
Alignment:
Q  1 taaaattgatgtcctttgaaaacaagtaggtccatccacttccaaattctaacttaggcttcttcaactaaatannnnnnncctgcaaattgcatctagt 100  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||||||||  |        |||||||||||||||||||    
T  41407634 taaaatggatgtcctttgaaaacatgtaggtccatccacttccaaattcagactttggcttcttcaacta--tttttttttcctgcaaattgcatctagt 41407537  T
Q  101 ttcaagacaactaaat-gtccatattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaa 199  Q
    || ||||||||||||| ||||||||| | || |    |||| ||||||||| ||| ||| |||||||||||||||||||||| |||||||||||| ||||    
T  41407536 tttaagacaactaaattgtccatattaccgaga----taaaatctgtcaactttcatactttttgttttgcagcaaggcagttccaaatactgattagaa 41407441  T
Q  200 agaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactga 255  Q
    ||||||||| ||||| ||||| || ||||||||||||  |||||||||||||||||    
T  41407440 agaatgaatagtgtgttatgctttaattacgcaaaactaatgagaaatctaactga 41407385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1041880 - 1041836
Alignment:
Q  1 taaaattgatgtcctttgaaaacaagtaggtccatccacttccaa 45  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  1041880 taaaattgatgtcctttgaaaacaagtaggttcatccacttccaa 1041836  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41192945 - 41192901
Alignment:
Q  1 taaaattgatgtcctttgaaaacaagtaggtccatccacttccaa 45  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  41192945 taaaattgatgtcctttgaaaacaagtaggttcatccacttccaa 41192901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 82 - 290
Target Start/End: Complemental strand, 33323403 - 33323191
Alignment:
Q  82 cctgcaaattgcatctagtttcaagacaactaaatgtccatat----tgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaagg 177  Q
    |||||||||||||||||||||||||||||||||||||||||||    ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33323403 cctgcaaattgcatctagtttcaagacaactaaatgtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaagg 33323304  T
Q  178 cagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagt 277  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33323303 cagtcccaaatactgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtagt 33323204  T
Q  278 atcctcctgttcc 290  Q
    |||||||||||||    
T  33323203 atcctcctgttcc 33323191  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33323471 - 33323427
Alignment:
Q  1 taaaattgatgtcctttgaaaacaagtaggtccatccacttccaa 45  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  33323471 taaaattgatgtcctttgaaaacaagtaggttcatccacttccaa 33323427  T

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Target: scaffold0271 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 23864 - 24113
Alignment:
Q  1 taaaattgatgtcctttgaaaacaagtaggtccatccacttccaaattctaacttaggcttcttcaactaaatannnnnnncctgcaaattgcatctagt 100  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||||||||  |        |||||||||||||||||||    
T  23864 taaaatggatgtcctttgaaaacatgtaggtccatccacttccaaattcagactttggcttcttcaacta--tttttttttcctgcaaattgcatctagt 23961  T
Q  101 ttcaagacaactaaat-gtccatattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaa 199  Q
    || ||||||||||||| ||||||||| | || |    |||| ||||||||| ||| ||| |||||||||||||||||||||| |||||||||||| ||||    
T  23962 tttaagacaactaaattgtccatattaccgaga----taaaatctgtcaactttcatactttttgttttgcagcaaggcagttccaaatactgattagaa 24057  T
Q  200 agaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactga 255  Q
    ||||||||| ||||| ||||| || |||||||||||| ||||||||||||||||||    
T  24058 agaatgaatagtgtgttatgctttaattacgcaaaactgatgagaaatctaactga 24113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 82 - 255
Target Start/End: Original strand, 3379 - 3549
Alignment:
Q  82 cctgcaaattgcatctagtttcaagacaactaaat-gtccatattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcag 180  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||| | || |    |||| ||||||||| ||| ||| |||||||||||||||||||||    
T  3379 cctgcaaattgcatctagttttaagacaactaaattgtccatattaccgaga----taaaatctgtcaactttcatactttttgttttgcagcaaggcag 3474  T
Q  181 tcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactga 255  Q
    | |||||||||||| ||||||||||||| ||||| ||||| || |||||||||||| ||||||||||||||||||    
T  3475 ttccaaatactgattagaaagaatgaatagtgtgttatgctttaattacgcaaaactgatgagaaatctaactga 3549  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 288
Target Start/End: Original strand, 16700352 - 16700472
Alignment:
Q  164 gttttgcagcaaggcagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaa 263  Q
    ||||||||||||| ||  |||||| | |||||||||||||| |    | || ||||||||||||| ||||||| |||||||| ||||||||| |||| ||    
T  16700352 gttttgcagcaagtcaaacccaaaaaatgataagaaagaataa----tatggtatgcatttattatgcaaaactgatgagaagtctaactgatattcgaa 16700447  T
Q  264 aacagattagtagtatcctcctgtt 288  Q
    |||| || ||| | ||||| |||||    
T  16700448 aacatatcagtcgcatcctgctgtt 16700472  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 224
Target Start/End: Complemental strand, 12001938 - 12001799
Alignment:
Q  85 gcaaattgcatctagtttcaagacaactaaat-gtccatattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcc 183  Q
    ||||||||||||||||||| || || | | || || |||||||||| |||| ||||| |||||||| | | || |||||   |||||||||||||||| |    
T  12001938 gcaaattgcatctagtttctagtcagccagattgttcatattgctggaaaccataaaatctgtcaaaccttcttcctttcagtttgcagcaaggcagttc 12001839  T
Q  184 caaatactgataagaaagaatgaatggtgtgatatgcattt 224  Q
    |||| |||||| | ||||||  ||| | |||||||||||||    
T  12001838 caaaaactgat-acaaagaaataatagagtgatatgcattt 12001799  T

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