View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11485_high_21 (Length: 226)
Name: NF11485_high_21
Description: NF11485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11485_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 41571511 - 41571312
Alignment:
| Q |
19 |
caaacatcaacctattaggatcctcacgttcaacattgttgttatcaagcatatcaaacaatgatgagtaatgaaaaacagcttctttaaaccttgtcac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41571511 |
caaacatcaacctattaggatcctcacgttcaacattgttgttatcaagcatatcaaacaatgatgagtaatgaaaaacagcttctttaaaccttgtcac |
41571412 |
T |
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| Q |
119 |
nnnnnnnggtgcatcataacaaccattaacaatgctttgaacaaatatattcggatttgccttcttaatcaaatccaaaacagcacccctttgcttctcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
41571411 |
aaaaaaaggtgcatcataacaaccattaacaatgctttgaacaaatatattcggatttgccttcttaatcaaatccaaaacagcaccccttggattctcc |
41571312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 41590459 - 41590270
Alignment:
| Q |
19 |
caaacatcaacctattaggatcctcacgttcaacattgttgttatcaagcatatcaaacaatgatgagtaatgaaaaacagcttctttaaaccttgtcac |
118 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| |||||||||||| |||||||||||||| |
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| T |
41590459 |
caaacatcaacctaaaaggatcctcacgttcaacattgttgtaatcaagcatatcaaacaatgctgaataataaaaaacagcttccttaaaccttgtcac |
41590360 |
T |
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| Q |
119 |
nnnnnnnggtgcatcataacaaccattaacaatgctttgaacaaatatattcggatttgccttcttaatcaaatccaaaacagcacccct |
208 |
Q |
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||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41590359 |
aaaaaaaggtgcatcataaccaccattaacaatgctatgaataaatatattcggatttgccttcttaatcaaatccaaaacagcacccct |
41590270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 41557799 - 41557612
Alignment:
| Q |
19 |
caaacatcaacctattaggatcctcacgttcaacattgttgttatcaagcatatcaaacaatgatgagtaatgaaaaacagcttctttaaaccttgtcac |
118 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||| |
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| T |
41557799 |
caaacatcaacctaacaggatcctcacgttcaacattgttgttatcaagcatatcaaacaatgctgaataatgaaaaacagcttccttaaaccttgtcac |
41557700 |
T |
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| Q |
119 |
nnnnnnnggtgcatcataacaaccattaacaatgctttgaacaaatatattcggatttgccttcttaatcaaatccaaaacagcaccc |
206 |
Q |
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||| |||| |||| ||||||||||||||| |||| ||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
41557699 |
aaaaaaaggttcatcgtaaccaccattaacaatgctatgaataaatatattcggatttgtctttctaatcaaatccaaaacagcaccc |
41557612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 41583928 - 41583741
Alignment:
| Q |
19 |
caaacatcaacctattaggatcctcacgttcaacattgttgttatcaagcatatcaaacaatgatgagtaatgaaaaacagcttctttaaaccttgtcac |
118 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||||||| |||||||||||||| |
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| T |
41583928 |
caaacatcaacctaataggatcctcacgttcaacattgttgtgatcaagcgtatcaaacaatgctgaataatgaaaaacagcttccttaaaccttgtcac |
41583829 |
T |
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| Q |
119 |
nnnnnnnggtgcatcataacaaccattaacaatgctttgaacaaatatattcggatttgccttcttaatcaaatccaaaacagcaccc |
206 |
Q |
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||| |||| |||| ||||||||||||||| |||| ||||||||||||||||| ||| ||||||||||||||||| ||||| |
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| T |
41583828 |
aaaaaaaggttcatcgtaaccaccattaacaatgctatgaataaatatattcggatttgtctttctaatcaaatccaaaacatcaccc |
41583741 |
T |
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