View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11485_high_4 (Length: 479)

Name: NF11485_high_4
Description: NF11485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11485_high_4
NF11485_high_4
[»] chr4 (3 HSPs)
chr4 (6-194)||(33370282-33370473)
chr4 (399-463)||(33370726-33370790)
chr4 (342-372)||(33370621-33370651)
[»] chr7 (5 HSPs)
chr7 (7-193)||(32548079-32548268)
chr7 (399-463)||(32548522-32548586)
chr7 (118-194)||(35770741-35770817)
chr7 (342-372)||(32548417-32548447)
chr7 (101-149)||(46251917-46251965)
[»] chr5 (3 HSPs)
chr5 (6-194)||(32943890-32944082)
chr5 (399-463)||(32944335-32944399)
chr5 (342-372)||(32944230-32944260)
[»] chr3 (2 HSPs)
chr3 (126-194)||(49288180-49288248)
chr3 (39-96)||(49085897-49085949)
[»] chr2 (3 HSPs)
chr2 (101-149)||(26893758-26893806)
chr2 (101-149)||(26899197-26899245)
chr2 (101-149)||(6852190-6852238)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 7e-84; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 33370282 - 33370473
Alignment:
Q  6 gagagagaagaatgcagataattttcaggcaaga---aacaacaacattcatcatcacatcacataaaacatattcctcaaaatcctttcaaactcatca 102  Q
    |||||||||||||||||||||||||||  || ||   ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33370282 gagagagaagaatgcagataattttcaatcatgaaacaacaacaacattcatcatcacatcacataaagcatattcctcaaaatcctttcaaactcatca 33370381  T
Q  103 tcactccaaatttcccacacattcaatttcttcaactcccataacaaatcaaattaccttgttttaccttcttttattgtgagattcaagtg 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33370382 tcactccaaatttcccacacattcaatttcttcaactcccataacaaatcaaattaccttattttaccttcttttattgtgagattcaagtg 33370473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 399 - 463
Target Start/End: Original strand, 33370726 - 33370790
Alignment:
Q  399 gtgaagggaaggagagttgggacaaccattttgatggtgttgctggtggtagtttggttggtatg 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  33370726 gtgaagggaaggagagttgggacaaccattttgatggtgttgctggtggtgggttggttggtatg 33370790  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 372
Target Start/End: Original strand, 33370621 - 33370651
Alignment:
Q  342 gtttggtatttttcatctgtcaattagggtg 372  Q
    |||||||||||||||||||||||||||||||    
T  33370621 gtttggtatttttcatctgtcaattagggtg 33370651  T

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Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 7 - 193
Target Start/End: Original strand, 32548079 - 32548268
Alignment:
Q  7 agagagaagaatgcagataattttcaggcaagaaaca---acaacattcatcatcacatcacataaaacatattcctcaaaatcctttcaaactcatcat 103  Q
    ||||||||||||||||||||||||||  |||||||||   ||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  32548079 agagagaagaatgcagataattttcaatcaagaaacaacaacaacatacatcatcacaccacataaagcatattcctcaaaatcctttcaaactcatcat 32548178  T
Q  104 cactccaaatttcccacacattcaatttcttcaactcccataacaaatcaaattaccttgttttaccttcttttattgtgagattcaagt 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32548179 cactccaaatttcccacacattcaatttcttcaactcccataacaaatcaaattaccttgttttaccttcttttattgtgagattcaagt 32548268  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 399 - 463
Target Start/End: Original strand, 32548522 - 32548586
Alignment:
Q  399 gtgaagggaaggagagttgggacaaccattttgatggtgttgctggtggtagtttggttggtatg 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  32548522 gtgaagggaaggagagttgggacaaccattttgatggtgttgctggtggtgggttggttggtatg 32548586  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 35770817 - 35770741
Alignment:
Q  118 cacacattcaatttcttcaactcccataacaaatcaaattaccttgttttaccttcttttattgtgagattcaagtg 194  Q
    ||||||| |||||| || || |||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  35770817 cacacatccaatttatttaattcccataacaaatcaaattaccttattttaccttctattatcgtgagattcaagtg 35770741  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 372
Target Start/End: Original strand, 32548417 - 32548447
Alignment:
Q  342 gtttggtatttttcatctgtcaattagggtg 372  Q
    |||||||||||||||||||||||||||||||    
T  32548417 gtttggtatttttcatctgtcaattagggtg 32548447  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 46251965 - 46251917
Alignment:
Q  101 catcactccaaatttcccacacattcaatttcttcaactcccataacaa 149  Q
    ||||||||||| |||| ||||| |||||| ||||||| |||||||||||    
T  46251965 catcactccaattttctcacaccttcaatatcttcaattcccataacaa 46251917  T

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Target: chr5 (Bit Score: 147; Significance: 3e-77; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 32943890 - 32944082
Alignment:
Q  6 gagagagaagaatgcagataattttcaggcaaga---aacaacaacattcatcatcacatcacataaaacatattcctc-aaaatcctttcaaactcatc 101  Q
    |||||||||||||||||||||||||||  || ||   ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  32943890 gagagagaagaatgcagataattttcaatcatgaaacaacaacaacattcatcatcacatcacataaagcatattcctcaaaaatcctttcaaactcatc 32943989  T
Q  102 atcactccaaatttcccacacattcaatttcttcaactcccataacaaatcaaattaccttgttttaccttcttttattgtgagattcaagtg 194  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32943990 atcactccaaatttcccacccattcaatttcttcaactcccataacaaatcaaattaccttattttaccttcttttattgtgagattcaagtg 32944082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 399 - 463
Target Start/End: Original strand, 32944335 - 32944399
Alignment:
Q  399 gtgaagggaaggagagttgggacaaccattttgatggtgttgctggtggtagtttggttggtatg 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  32944335 gtgaagggaaggagagttgggacaaccattttgatggtgttgctggtggtgggttggttggtatg 32944399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 372
Target Start/End: Original strand, 32944230 - 32944260
Alignment:
Q  342 gtttggtatttttcatctgtcaattagggtg 372  Q
    |||||||||||||||||||||||||||||||    
T  32944230 gtttggtatttttcatctgtcaattagggtg 32944260  T

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Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 49288180 - 49288248
Alignment:
Q  126 caatttcttcaactcccataacaaatcaaattaccttgttttaccttcttttattgtgagattcaagtg 194  Q
    |||||| ||||| |||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  49288180 caatttattcaattcccataacaaatcaaattaccttattttaccttctattatcgtgagattcaagtg 49288248  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 49085897 - 49085949
Alignment:
Q  39 aaacaacaacattcatcatcacatcacataaaacatattcctcaaaatcctttcaaac 96  Q
    ||||||||||||||||||||     ||||||| | |||||||||||||||||||||||    
T  49085897 aaacaacaacattcatcatc-----acataaagcttattcctcaaaatcctttcaaac 49085949  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 26893758 - 26893806
Alignment:
Q  101 catcactccaaatttcccacacattcaatttcttcaactcccataacaa 149  Q
    ||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  26893758 catcactccaaatttcttacacattcaatttcttcaattcccataacaa 26893806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 26899197 - 26899245
Alignment:
Q  101 catcactccaaatttcccacacattcaatttcttcaactcccataacaa 149  Q
    ||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  26899197 catcactccaaatttcttacacattcaatttcttcaattcccataacaa 26899245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 6852190 - 6852238
Alignment:
Q  101 catcactccaaatttcccacacattcaatttcttcaactcccataacaa 149  Q
    |||| |||||||||||  ||||||||||||||||||| |||||||||||    
T  6852190 catcgctccaaatttcttacacattcaatttcttcaattcccataacaa 6852238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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