View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11485_high_9 (Length: 403)
Name: NF11485_high_9
Description: NF11485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11485_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 6 - 398
Target Start/End: Complemental strand, 44708111 - 44707719
Alignment:
| Q |
6 |
aaatctatgatttgtaataaataaattaatataaatacggtgatccctattaaggttgatgggagggtgaaatttgtgcatgcaaatacatcaatggttc |
105 |
Q |
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| T |
44708111 |
aaatctatgatttgtaataaataaattaatataaatacggtgatccctaataaggttgatgggagggtgaaatttgtgcatgcaaatacatcaatggttc |
44708012 |
T |
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| Q |
106 |
tatcaattcacaaattgatgaaactgtagtgcatcatagtgcgcattagattacttgattccatcattactaccttgattaaaatatgaacttctattca |
205 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44708011 |
tatcaattcacaaattgatgaaattgtagtgcatcatagtgcacattagattacttgattccatcattactaccttgattaaaatatgaacttctattca |
44707912 |
T |
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| Q |
206 |
tcatctattnnnnnnnnnnnnnnnnnnnntaacttattttagcattttattattatatgcaggttccagtggaccataaagatcaaggggatggagctgt |
305 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44707911 |
tcatctcttaaaaaatgacaaaaaataaataacttattttagcattttattattatatgcaggttccagtggaccataaagatcaaggggttggagctgt |
44707812 |
T |
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| Q |
306 |
tccccaatctacaagtacaccaaattggacaattcatgtctcagatgtgggaaataaattgttacataatagtattgattattttttattgta |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44707811 |
tccccaatctacaagtacaccaaattggacaattcatgtctcagatgtgagaaataaattgttacataatagtattgattattttttattgta |
44707719 |
T |
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