View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11485_low_1 (Length: 671)

Name: NF11485_low_1
Description: NF11485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11485_low_1
NF11485_low_1
[»] chr4 (1 HSPs)
chr4 (19-661)||(49765601-49766229)


Alignment Details
Target: chr4 (Bit Score: 583; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 19 - 661
Target Start/End: Original strand, 49765601 - 49766229
Alignment:
Q  19 cacaaaactgaaagatagagctagctagctagaactttgaagagttactagaaagttatgatttaattaagacaaacccataagataaacaaagtagttg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  49765601 cacaaaactgaaagatagagctagctagctagaactttgaagagttactagaaagttatgatttaattaagacaaacccataagataaacaaagtagtag 49765700  T
Q  119 aagtaataacaatagaccagtagtaaattaattaacttgacactaattaatgtgtataataaaccaaatgttaaatctcctttattctttaccaaccttg 218  Q
    |             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49765701 a-------------gaccagtagtaa-ttaattaacttgacactaattaatgtgtataataaaccaaatgttaaatctcctttattctttaccaaccttg 49765786  T
Q  219 ttctgtaatcaatcatcctctagcagaaagcaaagatggcatagcagataaatttggtgtagcattcttattattatcattagcatctctaataatatct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49765787 ttctgtaatcaatcatcctctagcagaaagcaaagatggcatagcagataaatttggtgtagcattcttattattatcattagcatctctaataatatct 49765886  T
Q  319 cttctattattctgatgattctctttagaagatcctttgctactaaaagctctcataggactagcgaaagcccaaccccaactctttccaccacggtttt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49765887 cttctattattctgatgattctctttagaagatcctttgctactaaaagctctcataggactagcgaaagcccaaccccaactctttccaccacggtttt 49765986  T
Q  419 gagaaactgtaacagaaccttgttttcctcctccatttacagcatcatcagcagaattagaagaaacccaataagatgaagtagatgaatttgaagatga 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49765987 gagaaactgtaacagaaccttgttttcctcctccatttacagcatcatcagcagaattagaagaaacccaataagatgaagtagatgaatttgaagatga 49766086  T
Q  519 agatgatgtcatcatgaaaccactgaatattcctccacaccttctaagtactctctctttcatgcaatgatggtgatggtggtggtggtcttgagcacgg 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49766087 agatgatgtcatcatgaaaccactgaatattcctccacaccttctaagtactctctctttcatgcaatgatggtgatggtggtggtggtcttgagcacgg 49766186  T
Q  619 ttcacagaagcaataccattagaattagcaactactccctttg 661  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  49766187 ttcacagaagcaataccattagaactagcaactactccctttg 49766229  T

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