View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11485_low_10 (Length: 383)
Name: NF11485_low_10
Description: NF11485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11485_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 25791924 - 25791557
Alignment:
| Q |
1 |
atcattgtacaaattaacaataacaaatgaaataaccaaaataccctttcaatggaagactcggtattttgaaccatcctaacaagtgggttgccattag |
100 |
Q |
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| T |
25791924 |
atcattgtacaaattaacaataacaaataaaataaccaaaataccctttcaatggaagactcggtattttgaaccatcctaacaagtgggttgccgttag |
25791825 |
T |
|
| Q |
101 |
tgttgttgaatgcatagttaaaggcaggttcagttggcctagatggcacactttgttgtgatgatggtgcttttgaatcagatgaagaagagcttaatga |
200 |
Q |
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| T |
25791824 |
tgttgttgaatgcatagttaaaggcaggttcggttggcctagatggcacactttgtggtggtgatggtgcttttgaatcagatgaagaagagcttaatga |
25791725 |
T |
|
| Q |
201 |
agcttttgtaaaagaaactcgatggggaagatgtgatgaacggttgatgtgaagagaataaggtgtagagggagtgatgaaagtgtgacaagagagagcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25791724 |
agcttttgtaaaagaaactcgatggggaagatgtgatgaacggttgatgtgaagagaataaggtgtagagggagtgatgaaagtgtgacaagagagagcc |
25791625 |
T |
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| Q |
301 |
attgaaggtgtgttactaagc-nnnnnnnnatttatacacaatcaaatcatagcaatatggtaagtat |
367 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25791624 |
attgaaggtgtgttactaagctttttttttatttatacacaatcaaatcatagcaatatggtaagtat |
25791557 |
T |
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