View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11485_low_12 (Length: 355)
Name: NF11485_low_12
Description: NF11485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11485_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 337
Target Start/End: Complemental strand, 6564443 - 6564117
Alignment:
| Q |
11 |
cagagaaaaagagaaactgagaaaggttttatacaattcatggagcgggaaaaagaagaaaaaatggtttttgttttatacaaataataaaataatatgg |
110 |
Q |
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| T |
6564443 |
cagagaaaaagagaaactgagaaaggttttatacaattcatggagcgggaaaaagaagaaaaaatggtttttgttttatacaaataataaaaaaatatgg |
6564344 |
T |
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| Q |
111 |
aagaagaaggtgaaaacaaatgagaaggacgaggtttgtttaaggtgttacatatacgacctcatataatgactaatgaaagtgttacagttgttgcttg |
210 |
Q |
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| T |
6564343 |
aagaagatggtgaaaacaaatgagaaggacgaggtttgtttaaggtgttacatatacgacctcatataatgactaatgaaagtgttacagttgttgcttg |
6564244 |
T |
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| Q |
211 |
tgtaaagtaccaatatgggataatgatgacaacaatgaaacaaattctgaactgagatgtttaatgatatttattactgtgttacatgcatattgctaac |
310 |
Q |
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| T |
6564243 |
tgtaaagtaccaatatgggataatgatgacaacaatgaaacaaattctgaactgagatgtttaatgatatttattactgtgttacatgcatattgctaac |
6564144 |
T |
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| Q |
311 |
aattaaatgttgttgacagacatagat |
337 |
Q |
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| T |
6564143 |
aattaaatgttgttgacagacatagat |
6564117 |
T |
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