View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11485_low_16 (Length: 287)
Name: NF11485_low_16
Description: NF11485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11485_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 42472725 - 42472999
Alignment:
| Q |
1 |
cccatagggccggtcggcacaaggttcgagcaaccaaacaaagacttttagacctcacnnnnnnntatttttaacaaaagagaaaaggccttaaannnnn |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
42472725 |
cccatagggccggtcggcacaagggtcgagcaaccaaacaaagacttt-agacctcacaaaaaaatatttttaacaaaagagaaaaggccttaaattttt |
42472823 |
T |
|
| Q |
101 |
nnngttcatgaactatatttttctctttccaataaagaagatcaagtatcaattagttctcatcaatttccattttgaaagaagcttcccatcaattttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42472824 |
tttgttcatgaactatatttttctctttccaataaagaagatcaagtctcgattagttctcatcaatttccattttgaaagaagcttcccatcaattttc |
42472923 |
T |
|
| Q |
201 |
aaatgttaccnnnnnnncgtttacccatcttcatatttactgccttcaaatcttctcattgtattctatatttcat |
276 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
42472924 |
aaatgctacctttttttcgtttacccatcttcatatttactgccttcaactcttctcattgtattttatatttcat |
42472999 |
T |
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