View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11485_low_22 (Length: 225)

Name: NF11485_low_22
Description: NF11485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11485_low_22
NF11485_low_22
[»] chr1 (13 HSPs)
chr1 (8-208)||(14669470-14669670)
chr1 (8-208)||(14706234-14706434)
chr1 (12-207)||(14654103-14654297)
chr1 (12-207)||(14663894-14664088)
chr1 (12-126)||(14683900-14684014)
chr1 (2-70)||(14708718-14708786)
chr1 (12-71)||(14716441-14716500)
chr1 (21-88)||(14652684-14652752)
chr1 (21-88)||(14662475-14662543)
chr1 (3-79)||(14667007-14667083)
chr1 (1-88)||(14679998-14680085)
chr1 (1-57)||(14674620-14674676)
chr1 (1-57)||(14681738-14681794)
[»] chr2 (4 HSPs)
chr2 (1-208)||(30732147-30732353)
chr2 (1-79)||(30734127-30734205)
chr2 (23-80)||(9021009-9021065)
chr2 (23-79)||(8992294-8992349)
[»] chr8 (4 HSPs)
chr8 (1-71)||(10944297-10944367)
chr8 (24-61)||(37679916-37679953)
chr8 (14-79)||(42872408-42872471)
chr8 (27-63)||(37682222-37682258)
[»] chr6 (1 HSPs)
chr6 (4-62)||(10509493-10509551)
[»] chr4 (1 HSPs)
chr4 (4-64)||(11652298-11652357)
[»] chr5 (1 HSPs)
chr5 (23-66)||(3643801-3643843)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 8 - 208
Target Start/End: Complemental strand, 14669670 - 14669470
Alignment:
Q  8 tcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaatttttattctggttcatatctgtcgcatggtta 107  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  14669670 tcttgtgtgtcgccaatgtgttgcactatagcattggtctggtgcaccccaccaattcaagtttaaatttttattctggttcatatctggcacatggtta 14669571  T
Q  108 ccgtgttcatatcattaacataatcctttcctgcctaataatcgctatatggtacgttgtttgtattggcttggctttgtgaagaggctttgagttatat 207  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||    
T  14669570 ccgtgttcatatcattaacataatcctttcctgccaaataatcgctatatggtatgtagttcgtattggcttggctttgtgaagaggctttgagttatat 14669471  T
Q  208 g 208  Q
    |    
T  14669470 g 14669470  T

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Target: chr1; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 8 - 208
Target Start/End: Original strand, 14706234 - 14706434
Alignment:
Q  8 tcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaatttttattctggttcatatctgtcgcatggtta 107  Q
    |||||||||| | | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  14706234 tcttgtgtgttgactatgtgttgcactataacattggtctggcgcaccccaccaattcaagtttaaatttttattctggttcatatctggcacatggtta 14706333  T
Q  108 ccgtgttcatatcattaacataatcctttcctgcctaataatcgctatatggtacgttgtttgtattggcttggctttgtgaagaggctttgagttatat 207  Q
    ||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||  |||||||||||||||    
T  14706334 ccgtgttaaaatcattaacataatcctttcctgccaaataatcgctatatggtacgtagttcgtattggcttggctttgtgaaatggctttgagttatat 14706433  T
Q  208 g 208  Q
    |    
T  14706434 g 14706434  T

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Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 14654297 - 14654103
Alignment:
Q  12 gtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaatttttattctggttcatatctgtcgcatggttaccgt 111  Q
    |||||||| |||| |||||||||||||||||||  |||| ||||||||||||||||| ||||||||||||||||||| | ||||| | ||||| |   ||    
T  14654297 gtgtgtcgccaatatgttgcactatagcattggcttggctcaccccaccaattcaag-ttaaatttttattctggtttaaatctggcacatgggtgttgt 14654199  T
Q  112 gttcatatcattaacataatcctttcctgcctaataatcgctatatggtacgttgtttgtattggcttggctttgtgaagaggctttgagttatat 207  Q
    || ||| |||||| ||||||||||||||||||||||||| ||| || | | || |||  |||||||||||||||||||||||| |||| |||||||    
T  14654198 gtccatttcattagcataatcctttcctgcctaataatccctacatagcatgtagttcatattggcttggctttgtgaagaggatttgggttatat 14654103  T

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Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 14664088 - 14663894
Alignment:
Q  12 gtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaatttttattctggttcatatctgtcgcatggttaccgt 111  Q
    |||||||| |||| |||||||||||||||||||  |||| ||||||||||||||||| ||||||||||||||||||| | ||||| | ||||| |   ||    
T  14664088 gtgtgtcgccaatatgttgcactatagcattggcttggctcaccccaccaattcaag-ttaaatttttattctggtttaaatctggcacatgggtgttgt 14663990  T
Q  112 gttcatatcattaacataatcctttcctgcctaataatcgctatatggtacgttgtttgtattggcttggctttgtgaagaggctttgagttatat 207  Q
    || ||| |||||| ||||||||||||||||||||||||| ||| || | | || |||  |||||||||||||||||||||||| |||| |||||||    
T  14663989 gtccatttcattagcataatcctttcctgcctaataatccctacatagcatgtagttcatattggcttggctttgtgaagaggatttgggttatat 14663894  T

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Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 14683900 - 14684014
Alignment:
Q  12 gtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaatttttattctggttcatatctgtcgcatggttaccgt 111  Q
    |||||||  ||||||||||||||||||||||||  ||| ||||||||||||| |||  ||||||||||||||||||||||||||| | ||||||||||||    
T  14683900 gtgtgtcaccaatgtgttgcactatagcattggcttggtgcaccccaccaatccaaagttaaatttttattctggttcatatctggcacatggttaccgt 14683999  T
Q  112 gttcatatcattaac 126  Q
     | ||| ||||||||    
T  14684000 ttccatttcattaac 14684014  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 14708718 - 14708786
Alignment:
Q  2 taggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtt 70  Q
    |||||||||  ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  14708718 taggcttctcttgtgtcgtcaatgtgttgcactacagcattggcctggcgcaccccaccaattcaagtt 14708786  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 14716441 - 14716500
Alignment:
Q  12 gtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagttt 71  Q
    |||||||| ||||||||||||||||||||||||  ||| |||||||||||||||||||||    
T  14716441 gtgtgtcgccaatgtgttgcactatagcattggcttggtgcaccccaccaattcaagttt 14716500  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 14652684 - 14652752
Alignment:
Q  21 caatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaat-ttttattctggtt 88  Q
    ||||| ||||||||||||||||||  |||||||||||||||||||||||| |||| ||||||| |||||    
T  14652684 caatgcgttgcactatagcattggcgtggcgcaccccaccaattcaagttcaaatattttattttggtt 14652752  T

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Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 14662475 - 14662543
Alignment:
Q  21 caatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaat-ttttattctggtt 88  Q
    ||||| ||||||||||||||||||  |||||||||||||||||||||||| |||| ||||||| |||||    
T  14662475 caatgcgttgcactatagcattggcgtggcgcaccccaccaattcaagttcaaatattttattttggtt 14662543  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 14667083 - 14667007
Alignment:
Q  3 aggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaattttt 79  Q
    |||||||| | |||| | || |||||||||||||||||||||  ||||||||||||||||| |||| | ||||||||    
T  14667083 aggcttctcgagtgttgccagtgtgttgcactatagcattggcttggcgcaccccaccaatccaagctcaaattttt 14667007  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 14679998 - 14680085
Alignment:
Q  1 ctaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaatttttattctggtt 88  Q
    |||||||||||| |||| | ||||| ||||||||| ||||||||  |||||||||| ||||||   ||| ||||||||| || |||||    
T  14679998 ctaggcttcttgagtgttgccaatgcgttgcactacagcattggcttggcgcacccgaccaatctgagtctaaattttttttttggtt 14680085  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 14674620 - 14674676
Alignment:
Q  1 ctaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccc 57  Q
    |||||||||| | |||||  |||||| |||||||||||||||||| |||| ||||||    
T  14674620 ctaggcttctcgggtgtcaacaatgtattgcactatagcattggtttggcacacccc 14674676  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 14681738 - 14681794
Alignment:
Q  1 ctaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccc 57  Q
    |||||||||| | |||||  |||||| |||||||||||||||||| |||| ||||||    
T  14681738 ctaggcttctcgggtgtcaacaatgtattgcactatagcattggtttggcacacccc 14681794  T

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Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 30732147 - 30732353
Alignment:
Q  1 ctaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaatttttattctggttcatatctgtcgc 100  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |      
T  30732147 ctaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggtgcaccccaccaattcaagtttaaatttttattctggttcatatctggca- 30732245  T
Q  101 atggttaccgtgttcatatcattaacataatcctttcctgcctaataatcgctatatggtacgttgtttgtattggcttggctttgtgaagaggctttga 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || ||| |||||||||||||||||||||||||||||||    
T  30732246 atggttaccgtgttcatatcattatcataatcctttcctgccaaataatcgctatatggtatgtagttcgtattggcttggctttgtgaagaggctttga 30732345  T
Q  201 gttatatg 208  Q
    ||||||||    
T  30732346 gttatatg 30732353  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 30734127 - 30734205
Alignment:
Q  1 ctaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaattttt 79  Q
    |||||||||| | |||||| || || |||||||||| |||||||  ||||||||||||||||| |||||| ||||||||    
T  30734127 ctaggcttctcgagtgtcgccagtgcgttgcactattgcattggcttggcgcaccccaccaatccaagttcaaattttt 30734205  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 9021009 - 9021065
Alignment:
Q  23 atgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaattttta 80  Q
    |||||||||||||| |||| ||| ||| |||||||||||||||||||| |||||||||    
T  9021009 atgtgttgcactattgcataggt-tggtgcaccccaccaattcaagttcaaattttta 9021065  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 8992294 - 8992349
Alignment:
Q  23 atgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaattttt 79  Q
    |||||||||||||| |||| || |||||||||||| |||||||||||| ||||||||    
T  8992294 atgtgttgcactattgcatggg-ctggcgcacccctccaattcaagttcaaattttt 8992349  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 10944367 - 10944297
Alignment:
Q  1 ctaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagttt 71  Q
    |||||||||||| |||||   | || ||||||||||||||||||| |||||||||||||||||||||||||    
T  10944367 ctaggcttcttgagtgtcactattgcgttgcactatagcattggtttggcgcaccccaccaattcaagttt 10944297  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 37679916 - 37679953
Alignment:
Q  24 tgtgttgcactatagcattggtctggcgcaccccacca 61  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  37679916 tgtgttgcactatagcaatggtctggcgcaccccacca 37679953  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 42872471 - 42872408
Alignment:
Q  14 gtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaattttt 79  Q
    |||||||| |||||||||||||| ||| ||| ||| ||||||||||||||| |||||||| |||||    
T  42872471 gtgtcgtctatgtgttgcactattgca-tgggctgacgcaccccaccaatt-aagtttaatttttt 42872408  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 37682222 - 37682258
Alignment:
Q  27 gttgcactatagcattggtctggcgcaccccaccaat 63  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  37682222 gttgcactattgcattggtctggcgcgccccaccaat 37682258  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 10509493 - 10509551
Alignment:
Q  4 ggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaa 62  Q
    ||||||||||||||||  |||| ||||||||||||||||||  ||| ||||||||||||    
T  10509493 ggcttcttgtgtgtcgctaatgcgttgcactatagcattggcttggagcaccccaccaa 10509551  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 11652357 - 11652298
Alignment:
Q  4 ggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaatt 64  Q
    ||||||||| |||||| | |||||||||||||| ||| ||| |||||||||||||||||||    
T  11652357 ggcttcttgagtgtcgcctatgtgttgcactattgca-tgggctggcgcaccccaccaatt 11652298  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 3643801 - 3643843
Alignment:
Q  23 atgtgttgcactatagcattggtctggcgcaccccaccaattca 66  Q
    |||||||||||||| ||||||| |||||||||||||||||||||    
T  3643801 atgtgttgcactattgcattgg-ctggcgcaccccaccaattca 3643843  T

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