View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11485_low_23 (Length: 205)
Name: NF11485_low_23
Description: NF11485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11485_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 24 - 191
Target Start/End: Original strand, 32826916 - 32827083
Alignment:
| Q |
24 |
gggatctagtttcgatgcttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaacaatg |
123 |
Q |
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||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
32826916 |
gggatctagtttcgaggcttgttgtccttgtacagaatgccgagattttaagggaaaagtaatcccttctaataaaactctgtcaattgcagcaacaacg |
32827015 |
T |
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| Q |
124 |
tcctcatctatcatagcatcaatttcttcaaagtctttgctgacaaactttgaagtgttgcctttgct |
191 |
Q |
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| T |
32827016 |
tcctcatctatcatagcatcaatttcttcaaagtctttgctgacaaactttgaagtgttgcctttgct |
32827083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 42 - 183
Target Start/End: Complemental strand, 39737644 - 39737503
Alignment:
| Q |
42 |
ttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaacaatgtcctcatctatcatagca |
141 |
Q |
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| T |
39737644 |
ttctcgtccttggacagaatgctgggattttaaggaaagagtaatcccttccgataaaactctgtcaattgccgcaatgacatcctcatctaccatagca |
39737545 |
T |
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| Q |
142 |
tcaatttcttcaaagtctttgctgacaaactttgaagtgttg |
183 |
Q |
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| T |
39737544 |
tcaaattcttcagagtctatgctgactaattttgaagtgttg |
39737503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 24 - 189
Target Start/End: Original strand, 39856434 - 39856599
Alignment:
| Q |
24 |
gggatctagtttcgatgcttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaacaatg |
123 |
Q |
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| T |
39856434 |
gggatccagcttcgagacttcttgtttttgaacagaatggtgagattttaaggaaagagtaatcccttctgataacactctgtcgatcgcaccaatgaca |
39856533 |
T |
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| Q |
124 |
tcctcatctatcatagcatcaatttcttcaaagtctttgctgacaaactttgaagtgttgcctttg |
189 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||| ||||| |
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| T |
39856534 |
tcctcatctatcatagcatcaatttctttcaagtctttgctgacaaattttaaagtgttggctttg |
39856599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 41 - 166
Target Start/End: Original strand, 39897025 - 39897150
Alignment:
| Q |
41 |
cttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaacaatgtcctcatctatcatagc |
140 |
Q |
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|||||| |||||||||| ||| || || | ||||| || |||||||||||| ||||||||||||| |||||||||| | ||||||||||||||||| |
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| T |
39897025 |
cttcttctccttgtacagaattacgggactctaaggaaagagtaatcccttctgataaaactctgtcgattgcagcaatgacatcctcatctatcatagc |
39897124 |
T |
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| Q |
141 |
atcaatttcttcaaagtctttgctga |
166 |
Q |
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|||||||||||| |||||| |||||| |
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| T |
39897125 |
atcaatttcttccaagtctatgctga |
39897150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 38980491 - 38980370
Alignment:
| Q |
41 |
cttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaacaatgtcctcatctatcatagc |
140 |
Q |
| |
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|||||||| |||| ||| ||||| ||||||||| || || |||||||||||| |||||||||||| || | ||||| | ||||||||||||||||| |
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| T |
38980491 |
cttcttgttcttggacagaatgctgagattttacggaaatggtaatcccttctgataaaactctgttgatagaagcaatgacatcctcatctatcatagc |
38980392 |
T |
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| Q |
141 |
atcaatttcttcaaagtctttg |
162 |
Q |
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||||| ||||| ||||||||| |
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| T |
38980391 |
atcaacttctttcaagtctttg |
38980370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 151
Target Start/End: Original strand, 39863653 - 39863763
Alignment:
| Q |
41 |
cttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaacaatgtcctcatctatcatagc |
140 |
Q |
| |
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||||||||||||| ||| ||||| || ||| ||| | || ||| ||||||| |||||||| |||| |||||||||| || |||||| |||||||||| |
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| T |
39863653 |
cttcttgtccttgaacagaatgctgaaattgtaatgaaatggtattcccttcggataaaactttgtcgattgcagcaataacatcctcacctatcatagc |
39863752 |
T |
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| Q |
141 |
atcaatttctt |
151 |
Q |
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|||||| |||| |
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| T |
39863753 |
atcaatatctt |
39863763 |
T |
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