View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11485_low_3 (Length: 509)

Name: NF11485_low_3
Description: NF11485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11485_low_3
NF11485_low_3
[»] chr7 (13 HSPs)
chr7 (18-488)||(39343899-39344370)
chr7 (213-489)||(39358671-39358947)
chr7 (209-488)||(39569439-39569718)
chr7 (211-482)||(39552607-39552878)
chr7 (209-482)||(39543384-39543657)
chr7 (211-482)||(39332823-39333094)
chr7 (18-189)||(39358009-39358180)
chr7 (44-129)||(39569802-39569888)
chr7 (108-169)||(39332678-39332739)
chr7 (274-345)||(39585472-39585543)
chr7 (126-180)||(39358573-39358627)
chr7 (108-175)||(39552925-39552994)
chr7 (277-345)||(39579142-39579210)
[»] chr4 (2 HSPs)
chr4 (269-341)||(2882142-2882214)
chr4 (269-322)||(2871849-2871902)
[»] chr8 (1 HSPs)
chr8 (277-314)||(4494209-4494246)
[»] chr2 (3 HSPs)
chr2 (269-322)||(44215153-44215206)
chr2 (269-302)||(44238464-44238497)
chr2 (269-303)||(44227330-44227364)
[»] chr1 (1 HSPs)
chr1 (271-320)||(2166851-2166900)


Alignment Details
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 488
Target Start/End: Original strand, 39343899 - 39344370
Alignment:
Q  18 acatcagctatgtcactccaacatgtaaaaaaggaaaagggtcatttt-gactgcagaaaacaacaccaacagaaataaactgaagcaactttagcaaat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39343899 acatcagctatgtcactccaacatgtaaaaaaggaaaagggtcatttttgactgcagaaaacaacaccaacagaaataaactgaagcaactttagcaaat 39343998  T
Q  117 agctaatgatttttaataccattttctccaaatttgttgttagttactaggaccaattggattttgactagtggtaatgatggagggtggaggtagttca 216  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39343999 agctgatgatttttaataccattttctccaaatttgttgttagttactaggaccaattggattttgactagtggtaatgatggggggtggaggtagttca 39344098  T
Q  217 tcaatttggaggaacagtgatgctgctcagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39344099 tcaatttggaggaacagtgatgctgctcagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttc 39344198  T
Q  317 ctacttttgaacgtttgaggaaaggtttgcttacttcacttcaaggggaagccaccgaggttgatgttgagaagcttgggttgcaagtaagaaaagattt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39344199 ctacttttgaacgtttgaggaaaggtttgcttacttcacttcaaggggaagccaccgaggttgatgttgagaagcttgggttgcaagtaagaaaagattt 39344298  T
Q  417 gcttgaaagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgcatgga 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39344299 gcttgaaagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgcatgga 39344370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 213 - 489
Target Start/End: Original strand, 39358671 - 39358947
Alignment:
Q  213 ttcatcaatttggaggaacagtgatgctgctcagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaa 312  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  39358671 ttcatcaatttggaggaacagtgatgctgctgagatcttttcaaattcttttcaccaagaagatgatgaagaatctcttaaatgggctgcaattcagaag 39358770  T
Q  313 cttcctacttttgaacgtttgaggaaaggtttgcttacttcacttcaaggggaagccaccgaggttgatgttgagaagcttgggttgcaagtaagaaaag 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39358771 cttcctacttttgaacgtttgaggaaaggtttgcttacttcacttcaaggggaagccaccgaggttgatgttgagaagcttgggttgcaagaaagaaaag 39358870  T
Q  413 atttgcttgaaagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgcatggat 489  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39358871 atttacttgaaagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggat 39358947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 209 - 488
Target Start/End: Complemental strand, 39569718 - 39569439
Alignment:
Q  209 gtagttcatcaatttggaggaacagtgatgctgctcagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaaatgggctgcaattca 308  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39569718 gtagttcatcaatttggaggagcagtgatgcagctgagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaagtgggctgcaattca 39569619  T
Q  309 gaaacttcctacttttgaacgtttgaggaaaggtttgcttacttcacttcaaggggaagccaccgaggttgatgttgagaagcttgggttgcaagtaaga 408  Q
    ||| |||||||||||||  |||||||||||||||||||| |||||||||||||||||||||   ||| ||||| |||||||||||||| |||||| ||||    
T  39569618 gaatcttcctacttttgcgcgtttgaggaaaggtttgctcacttcacttcaaggggaagccgttgagattgatattgagaagcttgggctgcaagaaaga 39569519  T
Q  409 aaagatttgcttgaaagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgcatgga 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39569518 aaagatttgcttgaaagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatgga 39569439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 211 - 482
Target Start/End: Complemental strand, 39552878 - 39552607
Alignment:
Q  211 agttcatcaatttggaggaacagtgatgctgctcagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaaatgggctgcaattcaga 310  Q
    ||||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39552878 agttcatcaatatggaggaacagtgatgctgctgagatcttttcaaattctttccaccaagaagatgatgaagaagctcttaaatgggctgcaattcaga 39552779  T
Q  311 aacttcctacttttgaacgtttgaggaaaggtttgcttacttcacttcaaggggaagccaccgaggttgatgttgagaagcttgggttgcaagtaagaaa 410  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||||| ||||||||||||| ||||||    
T  39552778 aacttcctacttttgaacgtttgaggaaaggtttgctcacttcacttcaaggggaagccactgagatcgatgttgagaaccttgggttgcaagaaagaaa 39552679  T
Q  411 agatttgcttgaaagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcg 482  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||    
T  39552678 agatttacttgaaagacttgttagacttgctgaagaagacaatgaaaagtttttgctcaaactcaaggatcg 39552607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 209 - 482
Target Start/End: Complemental strand, 39543657 - 39543384
Alignment:
Q  209 gtagttcatcaatttggaggaacagtgatgctgctcagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaaatgggctgcaattca 308  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  39543657 gtagttcatcaatatggaggaacagtgatgctgctgagattttttctaattcttttcgccaagaagatgatgaagaagctcttaaatgggctgccattca 39543558  T
Q  309 gaaacttcctacttttgaacgtttgaggaaaggtttgcttacttcacttcaaggggaagccaccgaggttgatgttgagaagcttgggttgcaagtaaga 408  Q
    ||||||||||||||||| |||||| ||||||||||||||  |||  || |||||||||||||| ||| | ||||||||||||||||||||||||| ||||    
T  39543557 gaaacttcctacttttgcacgtttaaggaaaggtttgctctctttgctgcaaggggaagccactgagatcgatgttgagaagcttgggttgcaagaaaga 39543458  T
Q  409 aaagatttgcttgaaagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcg 482  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  39543457 aaagatttacttgaaagacttgttagacttgctgaagaggacaatgagaagtttttgctcaaactcaaggatcg 39543384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 211 - 482
Target Start/End: Original strand, 39332823 - 39333094
Alignment:
Q  211 agttcatcaatttggaggaacagtgatgctgctcagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaaatgggctgcaattcaga 310  Q
    ||||||||||| ||||||||||||||||| ||  ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  39332823 agttcatcaatatggaggaacagtgatgcagccgagattttttcaaattctttccaccaaggagatgatgaagaagctcttaaatgggctgcaattcaga 39332922  T
Q  311 aacttcctacttttgaacgtttgaggaaaggtttgcttacttcacttcaaggggaagccaccgaggttgatgttgagaagcttgggttgcaagtaagaaa 410  Q
      ||||||||||||||||||||||||||||||||||| |||||||||||||| | | ||| |||| ||||||||||||| |||||| |||||| ||  ||    
T  39332923 tccttcctacttttgaacgtttgaggaaaggtttgctcacttcacttcaaggtggaaccatcgagattgatgttgagaaccttgggatgcaagaaaagaa 39333022  T
Q  411 agatttgcttgaaagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcg 482  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39333023 agatttgctcgaaagacttgttagacttgctgaagaggacaatgaaaagtttctgctcaaacttaaggatcg 39333094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 39358009 - 39358180
Alignment:
Q  18 acatcagctatgtcactccaacatgtaaaaaaggaaaagggtcattttgactgcagaaaacaacaccaacagaaataaactgaagcaactttagcaaata 117  Q
    |||| |||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39358009 acattagctatgtcactccaacatggaaaaatagaaaagggtcattttgactgcagaaaacaacaccaacagaaataaactgaagcaactttagcaaata 39358108  T
Q  118 gctaatgatttttaataccattttctccaaatttgttgttagttactaggaccaattggattttgactagtg 189  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  39358109 gctaaagatttttaataccattttctccaaatttgttgttagttattacgaccaattggattttgactagtg 39358180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 39569888 - 39569802
Alignment:
Q  44 aaaaaaggaaaagggtcattttgactgcagaaaacaa-caccaacagaaataaactgaagcaactttagcaaatagctaatgatttt 129  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||  ||||||||||||||| ||||||    
T  39569888 aaaaaaggaaaagggtcattttgactgcagaaaaaaaacaccaacagaaataaactgaagcaaagttagcaaatagctaacgatttt 39569802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 39332678 - 39332739
Alignment:
Q  108 ttagcaaatagctaatgatttttaataccattttctccaaatttgttgttagttactaggac 169  Q
    |||||||||||| ||||||||| |||||| |||||||||| |||||||||||||||||||||    
T  39332678 ttagcaaatagcaaatgattttgaatacccttttctccaattttgttgttagttactaggac 39332739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 345
Target Start/End: Complemental strand, 39585543 - 39585472
Alignment:
Q  274 gatgatgaagaagctcttaaatgggctgcaattcagaaacttcctacttttgaacgtttgaggaaaggtttg 345  Q
    ||||||||||| ||| | |||||||||||||||||||  ||||| ||| ||| ||| ||||||| |||||||    
T  39585543 gatgatgaagaggctttgaaatgggctgcaattcagaggcttccgactgttgcacgcttgaggagaggtttg 39585472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 39358573 - 39358627
Alignment:
Q  126 tttttaataccattttctccaaatttgttgttagttactaggaccaattggattt 180  Q
    ||||||||| | ||||||||||||||||||||||| ||| |||| ||||| ||||    
T  39358573 tttttaatatccttttctccaaatttgttgttagtaactcggactaattgtattt 39358627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 39552994 - 39552925
Alignment:
Q  108 ttagcaaatagctaatgattttt--aataccattttctccaaatttgttgttagttactaggaccaattg 175  Q
    ||||||| |||| | ||||||||  |||||| ||||||||||||||||||||||| ||| |||| |||||    
T  39552994 ttagcaagtagccagtgattttttgaatacccttttctccaaatttgttgttagtaactcggactaattg 39552925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 345
Target Start/End: Complemental strand, 39579210 - 39579142
Alignment:
Q  277 gatgaagaagctcttaaatgggctgcaattcagaaacttcctacttttgaacgtttgaggaaaggtttg 345  Q
    |||||||| ||| | |||||||||||||||||||  ||||| ||| ||| ||| ||||||| |||||||    
T  39579210 gatgaagaggctttgaaatgggctgcaattcagaggcttccgactgttgcacgcttgaggagaggtttg 39579142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 2882142 - 2882214
Alignment:
Q  269 aagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctacttttgaacgtttgaggaaagg 341  Q
    |||| |||||||||||||||||||||||||||||| || | ||||| ||||||| | | ||||||||||||||    
T  2882142 aagatgatgatgaagaagctcttaaatgggctgcacttgaaaaactccctacttataaccgtttgaggaaagg 2882214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 2871849 - 2871902
Alignment:
Q  269 aagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctactt 322  Q
    ||||||||||||||||||| || ||||||||||||||| | ||||| |||||||    
T  2871849 aagaagatgatgaagaagccctcaaatgggctgcaattgaaaaactccctactt 2871902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 277 - 314
Target Start/End: Original strand, 4494209 - 4494246
Alignment:
Q  277 gatgaagaagctcttaaatgggctgcaattcagaaact 314  Q
    |||||||||||||||||||||||||||||| |||||||    
T  4494209 gatgaagaagctcttaaatgggctgcaattgagaaact 4494246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 44215206 - 44215153
Alignment:
Q  269 aagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctactt 322  Q
    |||||||||||||||||||||| |||||||||||| || | ||||| |||||||    
T  44215206 aagaagatgatgaagaagctctcaaatgggctgcacttgaaaaactacctactt 44215153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 44238497 - 44238464
Alignment:
Q  269 aagaagatgatgaagaagctcttaaatgggctgc 302  Q
    ||||||||||||||||||||||||||||||||||    
T  44238497 aagaagatgatgaagaagctcttaaatgggctgc 44238464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 44227364 - 44227330
Alignment:
Q  269 aagaagatgatgaagaagctcttaaatgggctgca 303  Q
    |||||||||||||||||||||| ||||||||||||    
T  44227364 aagaagatgatgaagaagctctcaaatgggctgca 44227330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 2166900 - 2166851
Alignment:
Q  271 gaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctac 320  Q
    ||||| |||||||||||||||||||||||||| ||| ||| |||||||||    
T  2166900 gaagacgatgaagaagctcttaaatgggctgctattgagagacttcctac 2166851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University