View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11485_low_5 (Length: 473)
Name: NF11485_low_5
Description: NF11485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11485_low_5 |
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| [»] scaffold0152 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 43 - 467
Target Start/End: Complemental strand, 16697443 - 16697019
Alignment:
| Q |
43 |
agctccttcgtattgataaaatctatgggagaataatcccatttccctatctgttgatgataaaatgcataaagataggttgtgtatgatgtcaggaata |
142 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16697443 |
agctcctttgtattgataaaatctatgggagaataatcccatttctctatctgttggtgataaaatgcataaagataggttgtgtatgatgtcaggaata |
16697344 |
T |
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| Q |
143 |
ttgattttatatgatggatagtttcatattttacataactattgtgcttaacaactttctatgctctctttcaatttctccaataaattatccaaaatta |
242 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
16697343 |
ttgattttatatgatggatagtctcatattttacataactattgtgcttaaccacttgctatgctctctttcaatttctccaataaattatccaaaatta |
16697244 |
T |
|
| Q |
243 |
acttcccatttgtttaaatannnnnnngtcctctttgttggattttagaacatccttggttgtctttgttacccgtgaagaagatgagtggttttcttat |
342 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16697243 |
acttcccatttgtttaaatatttttttgtactctttgttggattttagaacatccttggttgtctttgttacccgtgaagaagatgagtggttttcttat |
16697144 |
T |
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| Q |
343 |
taacaacctccaaccctaaaattttatacacatgaaatgatacacacatttagagcatgtcttccacattgcttcaaggtacacacaaagctatttttct |
442 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16697143 |
taacaacctccaaccctaaaattttatacacatgaaatgatacacacgtttagagcatgtcttccatattgcttcaaggtacacacaaagctatttttct |
16697044 |
T |
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| Q |
443 |
tcttatccttccctatgatgtccat |
467 |
Q |
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| T |
16697043 |
tcttatccttccctattttgtccat |
16697019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 105 - 467
Target Start/End: Original strand, 37256887 - 37257237
Alignment:
| Q |
105 |
aaatgcataaagataggttgtgtatgatgtcaggaatattgattttatatgatggatagtttcatattttacataactattgtgcttaacaactttctat |
204 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||| |
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| T |
37256887 |
aaatggataaagataggttgtgtatgatgtcaggaatattgattttatatgatggatagtctcatattttacataactattgcgcttaaccacttgctat |
37256986 |
T |
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| Q |
205 |
gctctctttcaatttctccaataaattatccaaaattaacttcccatttgtttaaata-nnnnnnngtcctctttgttggattttagaacatcc-ttggt |
302 |
Q |
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| T |
37256987 |
gctctcttccaatttctccaataaattatccaaaattaacttcccatttgtttaaatattttttttatcttctttgtgggattttagaacatcctttggt |
37257086 |
T |
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| Q |
303 |
tgtctttgttacccgtgaagaagatgagtggttttcttattaacaacctccaaccctaaaattttatacacatgaaatgatacacacatttagagcatgt |
402 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
37257087 |
tgtctttgttacccgtgaagaacattagtggttttcttattaacaacctccaaccctaaaattttatagagatgaaatgatacacacatttagagcatg- |
37257185 |
T |
|
| Q |
403 |
cttccacattgcttcaaggtacacacaaagctatttttcttcttatccttccctatgatgtccat |
467 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37257186 |
-------------tcaacgtacacacaaagctatttttcttcttatccttccctattttgtccat |
37257237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 18894325 - 18894281
Alignment:
| Q |
59 |
taaaatctatgggagaataatcccatttccctatctgttgatgat |
103 |
Q |
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| T |
18894325 |
taaaatctaagggcgaataatcccatttccctatcggttggtgat |
18894281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 19831 - 19766
Alignment:
| Q |
105 |
aaatgcataaagataggttgtgtatgatgtcaggaatattgattttatatgatggatagtttcata |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19831 |
aaatgcataaagataggttgtgtatgatgtcaggaatattgattttatatgatggatagtttcata |
19766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 32880 - 32945
Alignment:
| Q |
105 |
aaatgcataaagataggttgtgtatgatgtcaggaatattgattttatatgatggatagtttcata |
170 |
Q |
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| T |
32880 |
aaatgcataaagataggttgtgtatgatgtcaggaatattgattttatatgatggatagtttcata |
32945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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