View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11485_low_6 (Length: 472)
Name: NF11485_low_6
Description: NF11485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11485_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 14942855 - 14943138
Alignment:
| Q |
1 |
tcaaggtaatccatttgacaataagcaactacaagctaacatcttttaaaatccattgtnnnnnnnnnngcttttaaatccctattgattttaaacaagc |
100 |
Q |
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| T |
14942855 |
tcaaggtaatccatttgacaataagcaactacaacctaacatcttttaaaatccattgtaaaaaaaa--gcttttaaatccctattgattttaaacaagc |
14942952 |
T |
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| Q |
101 |
aagttggtttccaacttccataatccacttcaagagtaaaattgagatatccaactattacgcaccatccgcaagcctaatcccgtataatctatacaaa |
200 |
Q |
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| T |
14942953 |
aagttagtttccaacttccata-tccacttcaagtgtaaaattgagatatccaactattacgcaccatccgcaagcctaatcccgtataatctatacaaa |
14943051 |
T |
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| Q |
201 |
acactcattcaatttcaaatgtgaatctaaagaaacataaatttggtgaaaataaacattatattacactgaatcatgtcattttct |
287 |
Q |
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| T |
14943052 |
acactcattcaatttcaaatgtgaatctaaagaaacataaatttggtgaaaataaacattatattacactgaatcaagtcattttct |
14943138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 350 - 455
Target Start/End: Original strand, 14943555 - 14943660
Alignment:
| Q |
350 |
agaaggaagggaaggtaccttgggattggtgatatggtcatttttgcggatctcagcggcgattgtagaacgaagctgagaaacagtagcgacgtcgtaa |
449 |
Q |
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| T |
14943555 |
agaaggaaggaaaggtaccttgggattggtgatatggtcatttttgcggatctcagcggcgatggtagaacgaagctgagaaacggtagcgacgtcgtaa |
14943654 |
T |
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| Q |
450 |
agattg |
455 |
Q |
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|||||| |
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| T |
14943655 |
agattg |
14943660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 14943398 - 14943461
Alignment:
| Q |
286 |
ctagggtttgaatatattccaattaatataaaatcaaaacatgtacattgatataaccattttc |
349 |
Q |
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| T |
14943398 |
ctagggtttcaatatattccaattaatattaaatcaaaacatgtacattcatataaccattttc |
14943461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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