View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11486_high_6 (Length: 451)

Name: NF11486_high_6
Description: NF11486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11486_high_6
NF11486_high_6
[»] chr3 (3 HSPs)
chr3 (1-451)||(49734016-49734466)
chr3 (287-405)||(36288992-36289110)
chr3 (278-386)||(42689409-42689517)
[»] chr4 (8 HSPs)
chr4 (158-451)||(51216193-51216486)
chr4 (234-408)||(51149046-51149220)
chr4 (234-408)||(51159909-51160083)
chr4 (234-408)||(29933946-29934120)
chr4 (235-408)||(51202609-51202782)
chr4 (272-384)||(29936954-29937066)
chr4 (330-384)||(51199978-51200032)
chr4 (22-62)||(32754616-32754657)
[»] chr1 (2 HSPs)
chr1 (278-375)||(38566424-38566521)
chr1 (275-386)||(38525276-38525387)
[»] chr2 (2 HSPs)
chr2 (275-385)||(5823503-5823613)
chr2 (275-385)||(5766110-5766220)


Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 49734466 - 49734016
Alignment:
Q  1 tgacactattacgtaaacactcttgtaatagtttaagaaattaaagtgattgaatgtaaccatgttggtgtcagacactacacatgtcactaaacacgtc 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49734466 tgacactaatacgtaaacactcttgtaatagtttaagaaattaaagtgattgaatgtaaccatgtcggtgtcagacactacacatgtcactaaacacgtc 49734367  T
Q  101 atcgatctgaagtcatattcaatgtctgtgtgactgtttcatagtttgcaacaaacatgtgaattccaatatttcaaataactagctatttgtgtagcat 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49734366 atcgatctgaagtcatattcaatgtctgtgtgactatttcatagtttgcaacaaacatgtgaattccaatatttcaaataactagctatttgtgtagcat 49734267  T
Q  201 ggcttatgagattctgaattgttgaaaaacaacatatgcaggggtatgacacaatagtaggggagagagggatacaactttctggaggacagaagcaacg 300  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49734266 ggcttatgaggttctgaattgttgaaaaacaacatatgcaggggtatgacacaatagtaggggagagagggatacaactttctggaggacagaagcaacg 49734167  T
Q  301 tgtggcaattgcaagagccatagttaagaatccaagaatattactactagatgaagccacaagtgcacttgatgctgagtctgaaaaagtggttcatgat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49734166 tgtggcaattgcaagagccatagttaagaatccaagaatattactactagatgaagccacaagtgcacttgatgctgagtctgaaaaagtggttcatgat 49734067  T
Q  401 gcacttgatagattgagggtggacagaaccaccattgtggtggctcataga 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49734066 gcacttgatagattgagggtggacagaaccaccattgtggtggctcataga 49734016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 287 - 405
Target Start/End: Original strand, 36288992 - 36289110
Alignment:
Q  287 ggacagaagcaacgtgtggcaattgcaagagccatagttaagaatccaagaatattactactagatgaagccacaagtgcacttgatgctgagtctgaaa 386  Q
    ||||||||||| |||||||||||||||||||| ||| | |||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||    
T  36288992 ggacagaagcagcgtgtggcaattgcaagagcaatattgaagaatccaaaaatattactactagatgaagccaccagtgcccttgatgctgagtccgaaa 36289091  T
Q  387 aagtggttcatgatgcact 405  Q
    |||| ||||| ||||||||    
T  36289092 aagtagttcaggatgcact 36289110  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 386
Target Start/End: Complemental strand, 42689517 - 42689409
Alignment:
Q  278 ctttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatccaagaatattactactagatgaagccacaagtgcacttgatgctg 377  Q
    ||||| ||||||||||||||| |  | || ||||| ||| || || | ||||| |||  ||||||||| || |||||||| |||||||| || |||||||    
T  42689517 ctttcgggaggacagaagcaaagaatagccattgccagaaccttactaaagaagccagcaatattactccttgatgaagcaacaagtgctctcgatgctg 42689418  T
Q  378 agtctgaaa 386  Q
    |||| ||||    
T  42689417 agtccgaaa 42689409  T

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Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 158 - 451
Target Start/End: Original strand, 51216193 - 51216486
Alignment:
Q  158 tgtgaattccaatatttcaaataactagctatttgtgtagcatggcttatgagattctgaattgttgaaaaacaacatatgcaggggtatgacacaatag 257  Q
    |||||||| ||||||||||||||||||||||  | ||  ||||| |||| ||| ||||||||| | |||||| ||||||||||||||||||| |||||||    
T  51216193 tgtgaattgcaatatttcaaataactagctacctatgatgcatgccttacgaggttctgaattctagaaaaataacatatgcaggggtatgatacaatag 51216292  T
Q  258 taggggagagagggatacaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatccaagaatattactactagatgaagc 357  Q
    |||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||| ||    
T  51216293 taggagagcgagggattcaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaacaggccaagaatattactactagatgaggc 51216392  T
Q  358 cacaagtgcacttgatgctgagtctgaaaaagtggttcatgatgcacttgatagattgagggtggacagaaccaccattgtggtggctcataga 451  Q
    ||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  51216393 cacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggctcataga 51216486  T

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Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 234 - 408
Target Start/End: Original strand, 51149046 - 51149220
Alignment:
Q  234 atatgcaggggtatgacacaatagtaggggagagagggatacaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatcc 333  Q
    ||||| |||| |||||||| |||||||| |||||||| || ||| | ||||| ||||||||||| |||||||||||||| ||||| ||||| ||||||||    
T  51149046 atatgtagggctatgacacgatagtaggtgagagaggaattcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatcc 51149145  T
Q  334 aagaatattactactagatgaagccacaagtgcacttgatgctgagtctgaaaaagtggttcatgatgcacttga 408  Q
    || |||| || ||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||    
T  51149146 aaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtacaagatgcacttga 51149220  T

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Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 234 - 408
Target Start/End: Original strand, 51159909 - 51160083
Alignment:
Q  234 atatgcaggggtatgacacaatagtaggggagagagggatacaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatcc 333  Q
    |||||||||| |||||||| |||||||| |||||||| || ||| | || || ||||||||||| ||||||||||||||| |||| ||||| ||||||||    
T  51159909 atatgcagggctatgacacgatagtaggtgagagaggaattcaattatccgggggacagaagcagcgtgtggcaattgcacgagctatagtgaagaatcc 51160008  T
Q  334 aagaatattactactagatgaagccacaagtgcacttgatgctgagtctgaaaaagtggttcatgatgcacttga 408  Q
    || |||| || ||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||    
T  51160009 aaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtacaagatgcacttga 51160083  T

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Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 234 - 408
Target Start/End: Complemental strand, 29934120 - 29933946
Alignment:
Q  234 atatgcaggggtatgacacaatagtaggggagagagggatacaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatcc 333  Q
    |||||||||| |||||||| |||||||| |||||||| || ||| | || || ||||||||||| || |||||||||||||||||  | || ||||||||    
T  29934120 atatgcagggctatgacacgatagtaggcgagagaggaattcaattatccgggggacagaagcagcgggtggcaattgcaagagcgttggtgaagaatcc 29934021  T
Q  334 aagaatattactactagatgaagccacaagtgcacttgatgctgagtctgaaaaagtggttcatgatgcacttga 408  Q
     | |||| || ||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||    
T  29934020 gaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtgcaagatgcacttga 29933946  T

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Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 235 - 408
Target Start/End: Original strand, 51202609 - 51202782
Alignment:
Q  235 tatgcaggggtatgacacaatagtaggggagagagggatacaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatcca 334  Q
    ||||||||| ||||| ||| ||||||| ||||||||  | ||| | ||||| ||||||||||| |||||||||||||| ||||| ||||| |||||||||    
T  51202609 tatgcagggttatgatacagtagtaggagagagaggagttcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatcca 51202708  T
Q  335 agaatattactactagatgaagccacaagtgcacttgatgctgagtctgaaaaagtggttcatgatgcacttga 408  Q
    | |||| || ||||||||||||| || ||||||||||||||||||||||| || ||||| || |||||||||||    
T  51202709 aaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtacaagatgcacttga 51202782  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 384
Target Start/End: Complemental strand, 29937066 - 29936954
Alignment:
Q  272 atacaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatccaagaatattactactagatgaagccacaagtgcacttg 371  Q
    |||||||| ||||||||||| |||||| | || |||||||||||||| ||  | ||  | |||||||| ||||| || |||||||| |||||||| ||||    
T  29937066 atacaactctctggaggacaaaagcaaagagttgcaattgcaagagcaattttgaaagacccaagaatcttacttcttgatgaagctacaagtgcccttg 29936967  T
Q  372 atgctgagtctga 384  Q
    |||| || |||||    
T  29936966 atgcagaatctga 29936954  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 384
Target Start/End: Original strand, 51199978 - 51200032
Alignment:
Q  330 atccaagaatattactactagatgaagccacaagtgcacttgatgctgagtctga 384  Q
    |||||||||||||||| || |||||||| |||||||| ||||||||||| |||||    
T  51199978 atccaagaatattacttctcgatgaagctacaagtgcgcttgatgctgaatctga 51200032  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 32754616 - 32754657
Alignment:
Q  22 cttgtaatagtttaagaaatt-aaagtgattgaatgtaacca 62  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  32754616 cttgtaatagtttaagaaaatgaaagtgattgaatgtaacca 32754657  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 278 - 375
Target Start/End: Complemental strand, 38566521 - 38566424
Alignment:
Q  278 ctttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatccaagaatattactactagatgaagccacaagtgcacttgatgc 375  Q
    |||||||| || |||||||| ||  | || ||||||||||| ||| |||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  38566521 ctttctggtgggcagaagcagcgcattgccattgcaagagcaatacttaagaatccaagaattttacttctagatgaagctacaagtgcacttgatgc 38566424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 275 - 386
Target Start/End: Complemental strand, 38525387 - 38525276
Alignment:
Q  275 caactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatccaagaatattactactagatgaagccacaagtgcacttgatg 374  Q
    ||||| ||||| ||||||||||| ||  | || ||||||||||| ||  ||||||||||||||||  |||| || |||||||| ||||||||||||||||    
T  38525387 caactgtctggtggacagaagcagcgcattgcgattgcaagagcaatccttaagaatccaagaattctacttcttgatgaagctacaagtgcacttgatg 38525288  T
Q  375 ctgagtctgaaa 386  Q
    | || |||||||    
T  38525287 cagaatctgaaa 38525276  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 275 - 385
Target Start/End: Original strand, 5823503 - 5823613
Alignment:
Q  275 caactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatccaagaatattactactagatgaagccacaagtgcacttgatg 374  Q
    ||||||||||| ||||| |||||| |  | ||||||||||| |||||| | ||||||||||||||  | || || |||||||| ||||||||| | ||||    
T  5823503 caactttctggtggacaaaagcaaagaattgcaattgcaagggccatattgaagaatccaagaatccttcttcttgatgaagcaacaagtgcattggatg 5823602  T
Q  375 ctgagtctgaa 385  Q
    |||||||||||    
T  5823603 ctgagtctgaa 5823613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 385
Target Start/End: Original strand, 5766110 - 5766220
Alignment:
Q  275 caactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatccaagaatattactactagatgaagccacaagtgcacttgatg 374  Q
    ||||||||||| ||||| |||||| |  | |||||||| || || ||| | ||||| ||||||||  | || || |||||||| ||||||||| | ||||    
T  5766110 caactttctggtggacaaaagcaaagaattgcaattgctagggcaatattgaagaacccaagaatccttcttctcgatgaagcaacaagtgcattggatg 5766209  T
Q  375 ctgagtctgaa 385  Q
    |||||||||||    
T  5766210 ctgagtctgaa 5766220  T

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