View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11486_high_7 (Length: 411)
Name: NF11486_high_7
Description: NF11486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11486_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6324687 - 6324908
Alignment:
| Q |
1 |
tcttggatttattgctgtatatgagtacatttttcatagtacttaatatggctgaccttacaaagaactaatacttcgaataattaagtnnnnnnncgtc |
100 |
Q |
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| T |
6324687 |
tcttggatttattgctgtatatgagtacatatttcatagtacttaatatggctgaccttacaaagaactaatacttcgaataattaagtaaaaaaacgtc |
6324786 |
T |
|
| Q |
101 |
ttattcatgaagacaaaatagttaggctgaaacacatatagtttgactaaataacacaacaaagatctctaagaatttcactaggaagcgataatattgt |
200 |
Q |
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| T |
6324787 |
ttattcatgaagacaaaatagttaggctgaaacacatatagtttgactaaataacacaacaaagatctctaagaatttcactaggaagcgataatattgt |
6324886 |
T |
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| Q |
201 |
gttatagacagaaaactgtaga |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
6324887 |
gttatagacagaaaactgtaga |
6324908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 240 - 392
Target Start/End: Original strand, 6325415 - 6325567
Alignment:
| Q |
240 |
aaataaaccattgcatcctgtaaaaactatagcttgtcatatgaaaattactaaattataataaactcctaacgcgtttttcattttgacaagaatagcc |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6325415 |
aaataaaccattgcatcctgtaaaaactatagcttgtcgtatgaaaattactaaactataataaactcctaacgcgtttttcattttgacaagataagcc |
6325514 |
T |
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| Q |
340 |
taggatttgcttatatttgattgaaatagtcaatctttttcacatcggtatag |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6325515 |
taggatttgcttatatttgattgaaatagtcaatctttttcacatcggtatag |
6325567 |
T |
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