View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11486_high_8 (Length: 306)

Name: NF11486_high_8
Description: NF11486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11486_high_8
NF11486_high_8
[»] chr6 (32 HSPs)
chr6 (7-292)||(4616848-4617133)
chr6 (7-120)||(4480691-4480804)
chr6 (10-120)||(4601787-4601897)
chr6 (10-112)||(4504421-4504523)
chr6 (10-120)||(3171739-3171849)
chr6 (10-120)||(4516319-4516429)
chr6 (19-120)||(4505855-4505956)
chr6 (21-115)||(4267201-4267295)
chr6 (10-118)||(4560506-4560614)
chr6 (17-120)||(4492953-4493056)
chr6 (23-118)||(4592231-4592326)
chr6 (34-120)||(4299788-4299874)
chr6 (20-118)||(4570972-4571070)
chr6 (10-120)||(4625949-4626059)
chr6 (10-118)||(4613742-4613850)
chr6 (20-120)||(4515155-4515255)
chr6 (10-118)||(4585636-4585744)
chr6 (11-115)||(4622145-4622249)
chr6 (27-118)||(4557125-4557216)
chr6 (23-121)||(4392063-4392161)
chr6 (22-112)||(4490391-4490481)
chr6 (10-118)||(4563711-4563819)
chr6 (10-118)||(4579432-4579540)
chr6 (10-97)||(4260178-4260265)
chr6 (10-115)||(4256636-4256741)
chr6 (17-118)||(4574308-4574409)
chr6 (28-99)||(4568072-4568143)
chr6 (10-120)||(4461121-4461231)
chr6 (53-118)||(4606958-4607023)
chr6 (19-112)||(4469809-4469902)
chr6 (26-114)||(4598175-4598263)
chr6 (139-211)||(4601643-4601715)
[»] chr8 (3 HSPs)
chr8 (10-120)||(1674224-1674334)
chr8 (23-118)||(20863880-20863975)
chr8 (53-118)||(16686334-16686399)
[»] chr5 (2 HSPs)
chr5 (10-120)||(28000123-28000233)
chr5 (7-115)||(24103002-24103110)
[»] scaffold0288 (1 HSPs)
scaffold0288 (10-115)||(3743-3848)
[»] chr3 (1 HSPs)
chr3 (16-120)||(1281112-1281216)
[»] scaffold0477 (1 HSPs)
scaffold0477 (10-115)||(4710-4815)
[»] chr7 (1 HSPs)
chr7 (23-121)||(3086417-3086515)


Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-144; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 292
Target Start/End: Complemental strand, 4617133 - 4616848
Alignment:
Q  7 gaagcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttg 106  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  4617133 gaagcaaaaggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttgaacaaagttattaaggatgtgttg 4617034  T
Q  107 cttaaacaaaattaaggcacgaggtcgtatcaaaatttttaggctattactatgctttgatgtactgtatttttaactatgtattgtttcaatatttaat 206  Q
    |||||||||||||||| || ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4617033 cttaaacaaaattaagccaggaggtcgtatcgaaatttttaggccattactatgctttgatgtactgtatttttaactatgtattgtttcaatatttaat 4616934  T
Q  207 ttgggtttattggtggattattggtaagtgtaccaaatcgtcaatcaaagtaataaatttctaagttcatattcagagtttatctt 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4616933 ttgggtttattggtggattattggtaagtgtaccaaatcgtcaatcaaagtaataaatttctaagttcatattcagagtttatctt 4616848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 4480804 - 4480691
Alignment:
Q  7 gaagcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttg 106  Q
    |||||||| |||||||||||||||||||| |||||||||| |||| ||||| |||||||||||||||||||||||||||||||| |||||||| || |||    
T  4480804 gaagcaaaaggccatggagttgaagaagatggcagaggaggacacaagacctggtggttgttcatacatgaacttggacaaagtgattaaggaggtcttg 4480705  T
Q  107 cttaaacaaaatta 120  Q
    ||||||||||||||    
T  4480704 cttaaacaaaatta 4480691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 4601897 - 4601787
Alignment:
Q  10 gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt 109  Q
    ||||| |||||||||||||||||||| |||| |||||| |||||||| ||||||||||||||||| |||| ||||||||||||||||||| |||||||||    
T  4601897 gcaaaaggccatggagttgaagaagatggcaaaggagagcactagactaggtggttgttcatacaagaacctggacaaagttattaaggaggtgttgctt 4601798  T
Q  110 aaacaaaatta 120  Q
    |||||||||||    
T  4601797 aaacaaaatta 4601787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 4504421 - 4504523
Alignment:
Q  10 gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt 109  Q
    ||||| ||||||||||||||||||||||||||||||| |||| ||||  |||||||||||||||||||||||||||||||| |||||||| || ||||||    
T  4504421 gcaaaaggccatggagttgaagaagaaggcagaggaggacacaagacttggtggttgttcatacatgaacttggacaaagtgattaaggacgtcttgctt 4504520  T
Q  110 aaa 112  Q
    |||    
T  4504521 aaa 4504523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 3171849 - 3171739
Alignment:
Q  10 gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt 109  Q
    ||||||||||||||||||||||||||||||||||||| | || |||   |||||||||||||||||||||||||| ||||| |||||||| || ||||||    
T  3171849 gcaaagggccatggagttgaagaagaaggcagaggaggatacaagatttggtggttgttcatacatgaacttggataaagtgattaaggaggtcttgctt 3171750  T
Q  110 aaacaaaatta 120  Q
    |||||| ||||    
T  3171749 aaacaatatta 3171739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 4516429 - 4516319
Alignment:
Q  10 gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt 109  Q
    ||||| ||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||  |||||||||| ||||| |||||||| ||| ||||     
T  4516429 gcaaaaggccatggaattgaagaagaaggcagaggaggacacaagaccaggtggttgttcatatgtgaacttggaaaaagtgattaaggaggtgctgctc 4516330  T
Q  110 aaacaaaatta 120  Q
    |||||||||||    
T  4516329 aaacaaaatta 4516319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 4505956 - 4505855
Alignment:
Q  19 catggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaat 118  Q
    |||||||||||| |||| |||| ||||| | || ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  4505956 catggagttgaaaaagagggcaaaggaggatacaagacctggtggttgttcattcatgaacttggacaaagttattaaggaggtgttgcttaaacaaaat 4505857  T
Q  119 ta 120  Q
    ||    
T  4505856 ta 4505855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 4267201 - 4267295
Alignment:
Q  21 tggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaa 115  Q
    |||||||||||| ||||||||| |||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| ||  |||||||||||    
T  4267201 tggagttgaagaggaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaa 4267295  T

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Target: chr6; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 4560614 - 4560506
Alignment:
Q  10 gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt 109  Q
    ||||| |||||||||| ||||||| ||||| |||| | |||| ||||| || ||||||||||||||||||||||| ||||| |||||||| |||||||||    
T  4560614 gcaaaaggccatggagctgaagaaaaaggcggaggtgtacacgagacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgctt 4560515  T
Q  110 aaacaaaat 118  Q
    |||||||||    
T  4560514 aaacaaaat 4560506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 4493056 - 4492953
Alignment:
Q  17 gccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaa 116  Q
    |||| ||||||||| ||||||||||||||| ||||   ||| |||||||||||||||||||||||||||||||| || ||||| || |||||||||||||    
T  4493056 gccacggagttgaaaaagaaggcagaggaggacacagtacctggtggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaa 4492957  T
Q  117 atta 120  Q
    ||||    
T  4492956 atta 4492953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 4592326 - 4592231
Alignment:
Q  23 gagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaat 118  Q
    ||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||||||| | || ||||| |||||||||||| |||||    
T  4592326 gagttgaagaagaaggcagaggagaacacgagacctggaggttgttcatatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaat 4592231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 4299788 - 4299874
Alignment:
Q  34 gaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaatta 120  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||| ||  ||||||||||| ||||    
T  4299788 gaaggcagaggagaacactaatccaggtggttgttcgtacatgaacttggacaaagttattaaggaggttctgcttaaacaatatta 4299874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 4571070 - 4570972
Alignment:
Q  20 atggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaat 118  Q
    |||||| ||||||||||||| |||||| |||| ||||| |||||||||||||||||||||||||| ||||| |||||||| || ||||||||| |||||    
T  4571070 atggagatgaagaagaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaat 4570972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 4626059 - 4625949
Alignment:
Q  10 gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt 109  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||  |||| ||| | ||||| || || ||||||    
T  4626059 gcaaaaggccatggagttgaagaagaaggcagaggagaacattagtcccggtggttgttcatacatgaatatggataaactgattaatgatgtcttgctt 4625960  T
Q  110 aaacaaaatta 120  Q
    |||||| ||||    
T  4625959 aaacaatatta 4625949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 4613742 - 4613850
Alignment:
Q  10 gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt 109  Q
    ||||| ||| || |||||||||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||||||||| || || || ||| ||||     
T  4613742 gcaaaaggcaattgagttgaagaagaaggcagaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagtgatcaatgaggtgctgctg 4613841  T
Q  110 aaacaaaat 118  Q
    |||||||||    
T  4613842 aaacaaaat 4613850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 4515155 - 4515255
Alignment:
Q  20 atggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaatt 119  Q
    ||||||||||| ||||||||||| ||| |||||||||  || || | ||||||| |||||||||||||||| || ||||| |||||||||||||||||||    
T  4515155 atggagttgaaaaagaaggcagacgaggacactagacttggcgggtcttcatacttgaacttggacaaagtgatcaaggaggtgttgcttaaacaaaatt 4515254  T
Q  120 a 120  Q
    |    
T  4515255 a 4515255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 4585744 - 4585636
Alignment:
Q  10 gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt 109  Q
    ||||| ||| || ||||||||||||||||| |||||| |||| ||||| || |||||||||||||| |||||||| ||||| |||||||| || ||||||    
T  4585744 gcaaaaggcaatcgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacataaacttggaaaaagtgattaaggaggttttgctt 4585645  T
Q  110 aaacaaaat 118  Q
    ||| |||||    
T  4585644 aaataaaat 4585636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 4622249 - 4622145
Alignment:
Q  11 caaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctta 110  Q
    |||| |||||||||||||||| |||||||||| ||||  || || || ||||||||||||||||  ||||||||||||||||||||||| ||  ||||||    
T  4622249 caaaaggccatggagttgaaggagaaggcagatgagacgaccagccctggtggttgttcatacaacaacttggacaaagttattaaggaggtcatgctta 4622150  T
Q  111 aacaa 115  Q
    |||||    
T  4622149 aacaa 4622145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 4557216 - 4557125
Alignment:
Q  27 tgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaat 118  Q
    |||||| |||||| |||||| |||| ||||| |||||||||||||||||||| ||||| ||||| |||||||| || |||||||||||||||    
T  4557216 tgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaatttggaaaaagtgattaaggaggttttgcttaaacaaaat 4557125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 4392063 - 4392161
Alignment:
Q  23 gagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaattaa 121  Q
    |||||||||||||||||| ||||| ||||  |||| ||||||| ||||| |||||||||||||||| | |||||||| || ||||||||||| ||||||    
T  4392063 gagttgaagaagaaggcaaaggaggacacatgacctggtggttcttcattcatgaacttggacaaactgattaaggaggtcttgcttaaacataattaa 4392161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 4490391 - 4490481
Alignment:
Q  22 ggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaa 112  Q
    |||||||||||||||||||| |||| |||| ||||  |||||| ||||||||||||||||||||||||| |||||||| ||  ||||||||    
T  4490391 ggagttgaagaagaaggcagcggaggacacgagactcggtggtagttcatacatgaacttggacaaagtgattaaggatgtcatgcttaaa 4490481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 4563819 - 4563711
Alignment:
Q  10 gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt 109  Q
    ||||| ||| || |||||||||||||| |  ||||| ||||| ||| | || ||||||||||||||||||||||||||||| || ||||| || ||||||    
T  4563819 gcaaaaggcaattgagttgaagaagaaagtggaggaaaacacgagagctggaggttgttcatacatgaacttggacaaagtgatcaaggaggttttgctt 4563720  T
Q  110 aaacaaaat 118  Q
    |||||||||    
T  4563719 aaacaaaat 4563711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 4579540 - 4579432
Alignment:
Q  10 gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt 109  Q
    ||||| ||| || ||||||||||||||||  |||||| |||| ||||| || || |||||||||||||||||||| ||||| |||||||| ||||| ||     
T  4579540 gcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttactc 4579441  T
Q  110 aaacaaaat 118  Q
    |||||||||    
T  4579440 aaacaaaat 4579432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 4260178 - 4260265
Alignment:
Q  10 gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaag 97  Q
    ||||| || |||||||||||||| |||||||||||||||||| || |||  ||||| |||||  ||||||||||||||||||||||||    
T  4260178 gcaaaaggtcatggagttgaagaggaaggcagaggagaacaccagtccatctggttattcattgatgaacttggacaaagttattaag 4260265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 4256636 - 4256741
Alignment:
Q  10 gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt 109  Q
    ||||| || |||||| |||||||||||| ||||| ||||||| || |||| ||||  |||||  |||||||||||||||||||||||||| ||  |||||    
T  4256636 gcaaaaggtcatggaattgaagaagaagacagagaagaacaccagcccagctggtcattcattgatgaacttggacaaagttattaaggaggtcatgctt 4256735  T
Q  110 aaacaa 115  Q
    ||||||    
T  4256736 aaacaa 4256741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 4574409 - 4574308
Alignment:
Q  17 gccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaa 116  Q
    ||||| ||| ||||||||||||  |||| | |||| ||||| || |||||||||||||  |||||||| ||||| |||||||| ||||||||||||||||    
T  4574409 gccattgagctgaagaagaaggtggaggtggacacgagacctggaggttgttcatacacaaacttggagaaagtgattaaggaggtgttgcttaaacaaa 4574310  T
Q  117 at 118  Q
    ||    
T  4574309 at 4574308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 4568143 - 4568072
Alignment:
Q  28 gaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaagga 99  Q
    |||||||||||||||| || |||| ||||| |||| || |||||||||||||||||||||||| ||||||||    
T  4568143 gaagaagaaggcagagaaggacacaagacctggtgattcttcatacatgaacttggacaaagtgattaagga 4568072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 4461231 - 4461121
Alignment:
Q  10 gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt 109  Q
    ||||| || |||||| || ||||||||||  |||||| | || ||||| || |||  |||||||| ||||||||||||||| |||||||| || ||||||    
T  4461231 gcaaaaggtcatggaattcaagaagaaggtggaggaggataccagacctggaggtgtttcatacaagaacttggacaaagtcattaaggatgtcttgctt 4461132  T
Q  110 aaacaaaatta 120  Q
    |||||||||||    
T  4461131 aaacaaaatta 4461121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 4606958 - 4607023
Alignment:
Q  53 agaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaat 118  Q
    ||||||||||||| |||||||||||||||||| ||||| |||||| | || |||||||||||||||    
T  4606958 agaccaggtggtttttcatacatgaacttggaaaaagtgattaagaaggttttgcttaaacaaaat 4607023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 4469902 - 4469809
Alignment:
Q  19 catggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaa 112  Q
    ||||||||| ||||||||||  |||||| | || ||||| || |||  |||||||| ||||||||||||||| |||||||| || |||||||||    
T  4469902 catggagttcaagaagaaggtggaggaggataccagacctggaggtgtttcatacaagaacttggacaaagtcattaaggatgtcttgcttaaa 4469809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 4598263 - 4598175
Alignment:
Q  26 ttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaaca 114  Q
    ||||||| |||||| |||||| | || ||||  || |||||||||||||||||||| || ||||| |||||||| ||||| ||||||||    
T  4598263 ttgaagatgaaggcggaggaggaaacgagacttggaggttgttcatacatgaacttagagaaagtgattaaggaggtgtttcttaaaca 4598175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 4601715 - 4601643
Alignment:
Q  139 aaatttttaggctattactatgctttgatgtactgtatttttaactatgtattgtttcaatatttaatttggg 211  Q
    ||||| ||| |||||||||||||||||||| | ||||||||| |||||||| | || ||||||| ||||||||    
T  4601715 aaattattaagctattactatgctttgatgcaatgtattttttactatgtactattccaatattgaatttggg 4601643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 1674334 - 1674224
Alignment:
Q  10 gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt 109  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1674334 gcaaaaggccatggaattgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgctt 1674235  T
Q  110 aaacaaaatta 120  Q
    |||||||||||    
T  1674234 aaacaaaatta 1674224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 20863880 - 20863975
Alignment:
Q  23 gagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaat 118  Q
    |||||||||||||||||||||||| |||| ||||| |  ||| ||||||| ||||||||||||||||| |||||||| ||||||||||||||||||    
T  20863880 gagttgaagaagaaggcagaggaggacacaagaccggaaggtggttcatatatgaacttggacaaagtgattaaggaggtgttgcttaaacaaaat 20863975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 16686334 - 16686399
Alignment:
Q  53 agaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaat 118  Q
    ||||| |||||||||||||||||||||||||| ||||| |||| ||| || |||||||||||||||    
T  16686334 agacctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat 16686399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 28000123 - 28000233
Alignment:
Q  10 gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt 109  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  28000123 gcaaaaggccatggagttgaagaaaaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgttt 28000222  T
Q  110 aaacaaaatta 120  Q
    |||||||||||    
T  28000223 aaacaaaatta 28000233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 24103110 - 24103002
Alignment:
Q  7 gaagcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttg 106  Q
    |||||||| || | ||||||| |||||||||||||| |||||||| ||| | ||||||| ||||||||||||||||||||||||||||||||| ||  ||    
T  24103110 gaagcaaaaggtcttggagttcaagaagaaggcagaagagaacacaagatctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatg 24103011  T
Q  107 cttaaacaa 115  Q
    |||||||||    
T  24103010 cttaaacaa 24103002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 3743 - 3848
Alignment:
Q  10 gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt 109  Q
    ||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| || ||||||    
T  3743 gcaaaaggccgtggagttaaagaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgctt 3842  T
Q  110 aaacaa 115  Q
    ||||||    
T  3843 aaacaa 3848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 1281216 - 1281112
Alignment:
Q  16 ggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaa 115  Q
    ||||||||| |||||||||  ||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||    
T  1281216 ggccatggaattgaagaaggcggcggaggagaacactagaccgggtggttgttcatacatgaacttcgacaaagtgattaaggaaatgttgcttaaacaa 1281117  T
Q  116 aatta 120  Q
    |||||    
T  1281116 aatta 1281112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 4710 - 4815
Alignment:
Q  10 gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt 109  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||  | ||||| |||||||||||||||||||||||||| |||||||| ||  |||||    
T  4710 gcaaaaggccatggagttgaagaagaaggcagaggagaacaccagttctggtggctgttcatacatgaacttggacaaagtgattaaggaggtcatgctt 4809  T
Q  110 aaacaa 115  Q
    ||||||    
T  4810 aaacaa 4815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 3086515 - 3086417
Alignment:
Q  23 gagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaattaa 121  Q
    ||||| |||||||| ||||| |||||||| ||    ||||||||||||||||||||||||||||||||||||||||| || ||||||||| || |||||    
T  3086515 gagttaaagaagaaagcagaagagaacaccagtatcggtggttgttcatacatgaacttggacaaagttattaaggaggtcttgcttaaaaaatattaa 3086417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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