View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11486_low_1 (Length: 703)
Name: NF11486_low_1
Description: NF11486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11486_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 656; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 9 - 687
Target Start/End: Original strand, 34109739 - 34110420
Alignment:
| Q |
9 |
agaagcagagatgttaatagaagaactgatacaagggaaagatgcagtaaacaaacactccaaagtcccatggtggaaatgttgttgtttaccttgtttc |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34109739 |
agaaacagagatgttaatagaagaactgatacaagggaaagatgcagtaaacaaacactccaaagtcccatggtggaaatgttgttgtttaccttgtttc |
34109838 |
T |
|
| Q |
109 |
caaggagagatttatgatagagaagagaaaattgctagatccagtagtcttgttactccgatgaacacggcaagggatgttaaaaaggtattgtctatat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34109839 |
caaggagagatttatgatagagaagagaaaattgctagatccagcagtcttgttactccgatgaacacggcaagggatgttaaaaaggtattgtctatat |
34109938 |
T |
|
| Q |
209 |
tgaaagataggcaggaggggaggaaattcaagaggttatgtgatgctcctgtaaaacctgatctcactgttggattggattttcctttgattcagttgaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34109939 |
tgaaagataggcaggaggggaggaaattcaagaggttatgtgatgctcctgtaaaacctgatctcactgttggattggattttcctttgattcagttgaa |
34110038 |
T |
|
| Q |
309 |
gagttggttactcggcagtggtgtgtctgtacttgttttaaccggtttggctggatctggcaaaactactttggctacgttgctctgttgggatgacaaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34110039 |
gagttggttactcggcagtggtgtgtctgtacttgttttaaccggtttggctggatctggcaaaactactttggctacgttgctctgttgggatgacaaa |
34110138 |
T |
|
| Q |
409 |
gttagaggtaacatgcataatataactctctatctacactttttattgaaagtgtgtatatatgtttgtcgagattgtgtcagatgtctatatatgtgtc |
508 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34110139 |
gttagaggtaaaatgcataatataactctctatctacactttttattgaaagtgtgtatatatgtttgtcgagattgtgtcagatgtctatatatgtgtc |
34110238 |
T |
|
| Q |
509 |
ggtgcttcataaataattcttacctaactaactaacctcgttaagtaactggtgtggttgcatcatgctatttgatattattgagaatcatgataaaata |
608 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34110239 |
ggtgcttcataaataattcttacctaactaactaacctcgttaagtaactggtgtggttgcatcatgctatttgatattattgagaatcatgataaaata |
34110338 |
T |
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| Q |
609 |
tagttgatgcaacttc---tgttgttgtggagacttcgataactatgatattgtacacttttttgaaaccttactctttcat |
687 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34110339 |
tagttgatgcaacttctgttgttgttgtggagacttcgataactatgatattgtacacttttttgaaaccttactctttcat |
34110420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 23 - 422
Target Start/End: Original strand, 34121597 - 34122014
Alignment:
| Q |
23 |
taatagaagaactgatacaagggaaagatgcagtaaacaaacactccaaagtcccatggtggaaatgttgttgtttaccttgtttccaaggagagattta |
122 |
Q |
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| T |
34121597 |
taatggaagaacttaaacaagggaaagaggtagttaacaaacactccaaagttccttggtggaaattttgttgtctaccttgcttccaaggagaacttca |
34121696 |
T |
|
| Q |
123 |
tgatagagaagagaaaattgctagatccagtagtcttgttactccgatgaacacggcaagggatgttaaaaaggtattgtctatattgaaagataggcag |
222 |
Q |
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| || |||||||||||||||||| || |||| |||||||| ||||||||||||||||| ||||||||| || | | |||||| ||| |||| | || |
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| T |
34121697 |
agctaaggaagagaaaattgctagaacctgtagccttgttaccccgatgaacacggcaagagatgttaaagagacactttctatagtgagagatttgaag |
34121796 |
T |
|
| Q |
223 |
gagggga----ggaaattcaagaggtt------atgtgatgctcctgtaaaacctgatctcactgttggattggattttcctttgattcagttgaagagt |
312 |
Q |
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| || || || ||||||||||| ||||||| ||||||||||||||||| |||||||||| |||||| | ||| || ||||||||||| | |
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| T |
34121797 |
g-ggagacaattcaatttcaagaggttatgtgaatgtgatcctcctgtaaaacctgatttcactgttgggttggatgtgcctctgcatcagttgaagaat |
34121895 |
T |
|
| Q |
313 |
tggttactcggcagtggtgtg---------tctgtacttgttttaaccggtttggctggatctggcaaaactactttggctacgttgctctgttgggatg |
403 |
Q |
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||| | ||| | |||| |||| ||||||| ||| ||||| || ||||||||||| || ||||| ||||||||||||||||| ||||| |||| |
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| T |
34121896 |
tgggtgctcagtagtgatgtgtctgtagactctgtacatgtgttaactggcttggctggatccgggaaaaccactttggctacgttgctatgttgcgatg |
34121995 |
T |
|
| Q |
404 |
acaaagttagaggtaacat |
422 |
Q |
| |
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||||||||| ||||||||| |
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| T |
34121996 |
acaaagttataggtaacat |
34122014 |
T |
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