View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11486_low_11 (Length: 239)
Name: NF11486_low_11
Description: NF11486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11486_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 27089988 - 27089834
Alignment:
| Q |
1 |
tggtgtcaaagccctgagcactttttcaaccttcatcacatcagtgataatatctccannnnnnn--catctggtttgtcaggttaaccaacctagcaaa |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||||| |
|
|
| T |
27089988 |
tggtgtcaaagccctgagcactttttcaac---------atcagtgataatatctccatttttttttcatctggtttatcaggttgaccaacctagcaaa |
27089898 |
T |
|
| Q |
99 |
atattgactcacctattcattattagccgtcgataaaagttcatactgcctcgatatatagtgt |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27089897 |
atattgactcacctattcattattagccgtcgataaaagttcatactgcctcgatatatagtgt |
27089834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 27188313 - 27188467
Alignment:
| Q |
1 |
tggtgtcaaagccctgagcactttttcaaccttcatcacatcagtgataatatctccannnnnnn--catctggtttgtcaggttaaccaacctagcaaa |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||||| |
|
|
| T |
27188313 |
tggtgtcaaagccctgagcactttttcaac---------atcagtgataatatctccatttttttttcatctggtttatcaggttgaccaacctagcaaa |
27188403 |
T |
|
| Q |
99 |
atattgactcacctattcattattagccgtcgataaaagttcatactgcctcgatatatagtgt |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27188404 |
atattgactcacctattcattattagccgtcgataaaagttcatactgcctcgatatatagtgt |
27188467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 27089031 - 27088964
Alignment:
| Q |
156 |
atagtgtttgaagcctcatctttcttcaatcttcacgatccattgaacataattttttccataaaaaa |
223 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27089031 |
atagtgtttgaagcctcacctttcttcaatcttcacgatccattgaatgtaattttttccataaaaaa |
27088964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 27189270 - 27189337
Alignment:
| Q |
156 |
atagtgtttgaagcctcatctttcttcaatcttcacgatccattgaacataattttttccataaaaaa |
223 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27189270 |
atagtgtttgaagcctcacctttcttcaatcttcacgatccattgaatgtaattttttccataaaaaa |
27189337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University