View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11486_low_2 (Length: 591)
Name: NF11486_low_2
Description: NF11486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11486_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 584
Target Start/End: Original strand, 8920798 - 8921368
Alignment:
| Q |
19 |
caatttcctatgcaaaaatgacaaactcaaaatcattannnnnnnnatgttagttgttatgttatgttaatatttttctactttatttgtatttgaattc |
118 |
Q |
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| T |
8920798 |
caatttcctatgcaaaaatgacaaactcaaaatcattgctatttttatgatagttgttatgtta-----atatttttctactttatttgtatttgaattc |
8920892 |
T |
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| Q |
119 |
taaacttttacttcttacctcctttaatcttttagttcaaccaactaaattaatcatccctggaacaattgttttgttggcatgacattggaaaagaaaa |
218 |
Q |
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| T |
8920893 |
taaacttttacttcttacctcctttaatcttttagttcaacgaactaaattaatcatccctggaacaattgttttgttggcatgacattggaaaagaaaa |
8920992 |
T |
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| Q |
219 |
agagtgagaaaattaattaagttttgcgttgctatatatgaattaat-------------aacaggttatttatgctgtgaccttatttatcaaggcgat |
305 |
Q |
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| T |
8920993 |
agagtgagaaaattaattaaggcatgcgtagctatatatgaattaatcataatttagagcaacaggttatttatgctgtgaccttat----caaggcgat |
8921088 |
T |
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| Q |
306 |
tgaggtaaaataggtgagacatgcattacaccttgctgaattaaaggtaatgtatccctaatgacaagtataattcaattcttaaacgaatgagatagtg |
405 |
Q |
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| T |
8921089 |
tgaggtaaaataggtgagatatgcattacaccttgatgaattaaaggtaatgtatctctaatgacaagtataattcaattcttaaacgaatgagatagtg |
8921188 |
T |
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| Q |
406 |
atcacaagtactctaaaatctctcggttaactatttaattacctccactaattatctctctccacttcaagagacacaatctggcgcaggcactatagaa |
505 |
Q |
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| T |
8921189 |
atcacaagtactctaaaatctctcggttaactatttaattacctccactaattatctctctccacttcatgagacacaatctggcgcaggcactatagaa |
8921288 |
T |
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| Q |
506 |
agcaacactgcatgtgagtaaagacctaaagttgaatgaatctaatccccgtc-aactctacatgccccatacacctttg |
584 |
Q |
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| T |
8921289 |
agcaacactgcatgtgagtaaagacctaaagttgaatgaatctaatccccgtcaaactctgcatgccccatacacctttg |
8921368 |
T |
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