View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11486_low_3 (Length: 573)
Name: NF11486_low_3
Description: NF11486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11486_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 192 - 557
Target Start/End: Complemental strand, 2893835 - 2893470
Alignment:
| Q |
192 |
taatataataccaaaaattaaattttttaccttctccatatcaacatcttcatcctcaacaccacgcaaatcctcagcaatgaccttctgatgaatcctg |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2893835 |
taatataataccaaaaattaaattttttaccttctccatatcaacatcttcatcctcaacaccacgcaaatcctcagcaatgaccttctgatgaatcctg |
2893736 |
T |
|
| Q |
292 |
acaagcgcatccatagcaggacacataaactcaccagaatcttcaaaatcatttgattcatcagaaacactataaaccgtaacaacacgctcatcacaac |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2893735 |
acaagcgcatccatagcaggacacataaactcaccagaatcttcaaaatcatttgattcatcagaaacactataaaccgtaacaacacgctcatcacaac |
2893636 |
T |
|
| Q |
392 |
caggaacagtttcaccaattcggatcttcgccttcgtatcaagacggagttgtttcacgatctcgccgccgcggccaatgatgctgccgattttgcgcac |
491 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2893635 |
caggaacagtttcaccaattcggatcttcgcctttgtatcaagacggagttgtttcacgatctcgccgccgcggccaatgatgctgccgattttgcgcac |
2893536 |
T |
|
| Q |
492 |
aggacaaaggtaacggtaaacggtgtcgtcttgggttatgtgaaatgtgtctcttggagtggtttc |
557 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2893535 |
aggacaaaggtaacggtaaacggtgtcgtcttgggttatgtgaaatgtgtctcttggagtggtttc |
2893470 |
T |
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