View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11486_low_4 (Length: 568)
Name: NF11486_low_4
Description: NF11486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11486_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 494; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 17 - 560
Target Start/End: Original strand, 8653074 - 8653629
Alignment:
| Q |
17 |
actacatgtatgtgtctgacaccaatacatgttagacatccgacactgacacataactacatgtgtttgtgtctaacaccattacgtgtcaggcgcacct |
116 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8653074 |
actacatgtatgtgtctgacaccaatacatgtcagacacccgacactgacacataactacatgtgtttgtgtctaacaccattacgtgtcaggcgcacct |
8653173 |
T |
|
| Q |
117 |
ggcacacgttcaatctagagactaaaagttgttacataggtcataataatcctcaacag---------aaataaaaccaaaacagattgtaaataccaat |
207 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8653174 |
ggcacacattcaatctagagactaaaagttgttacataggtcataataatcctcaacagcatcaacagaaataaaaccaaaacagattgtaaataccaat |
8653273 |
T |
|
| Q |
208 |
tacctccagttttcatagca---gcagggtcataactctcactattcaaaaactcattaacatcctcgaaacctcgcccataaacagcccatctaggatt |
304 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8653274 |
tacctccagttttcatagcagcagcagggtcataactctcactattcaaaaactcattaacatcctcgaaacctcgcccataaacagcccatctaggatt |
8653373 |
T |
|
| Q |
305 |
cctaggcactaccctctcatcaccagacccatcactcaacccaccttcttcttcatcatcctctttctcagcaaaaaccttatcaagaactaaaggcttc |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8653374 |
cctaggcactaccctctcatcaccagacccatcactcaacccaccttcttcttcatcatcctctttctcagcaaaaaccttatcaagaactaaaggcttc |
8653473 |
T |
|
| Q |
405 |
atctgagccaatttagcttctttataagctttatactcattcaaatccatatccctcaaaggaatcaaccctcttttcttcttcataactttactattaa |
504 |
Q |
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| T |
8653474 |
atctgagccaatttagcttctttataagccttatactcattcaaatccatatccctcaaaggaatcaaccctcttttcttcttcataactttactattaa |
8653573 |
T |
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| Q |
505 |
actcaatctcttgtgctatcttacgccgttctttcttcgttatgtttatctctgct |
560 |
Q |
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| T |
8653574 |
actcaatctcttgtgctatcttacgccgttctttcttcgttatgtttatctctgct |
8653629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 70 - 327
Target Start/End: Complemental strand, 9173083 - 9172817
Alignment:
| Q |
70 |
taactacatgtgtttgtgtctaacaccattacgtgtcaggcgcacctggcacacgttcaatctagagactaaaagttgttacataggtcataataatcct |
169 |
Q |
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||||||| |||||||||||||||||||||| |||||||| ||||||| ||| | |||||||||||||||| ||||| |||||||||||| ||||||||| |
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| T |
9173083 |
taactacgtgtgtttgtgtctaacaccattgtgtgtcaggggcacctgacacgccttcaatctagagactagaagttattacataggtcacaataatcct |
9172984 |
T |
|
| Q |
170 |
c---------aacagaaataaaaccaaaacagattgtaaataccaattacctccagttttcatagcagcagggtcataactctcactattcaaaaactca |
260 |
Q |
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| T |
9172983 |
cgacaacattaacaaaaataaaaccaaaacagattgtaaataccaattacctccaattttcttagcagcaggatcataactctcactgttcaaaaactcc |
9172884 |
T |
|
| Q |
261 |
ttaacatcctcgaaacctcgcccataaacagcccatctaggattcctaggcactaccctctcatcac |
327 |
Q |
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||||||||||| || ||| ||||||||||||||| ||||||||||||| | ||||||||||||||| |
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| T |
9172883 |
ttaacatcctccaaccctttcccataaacagcccacctaggattcctagcctctaccctctcatcac |
9172817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 380 - 537
Target Start/End: Complemental strand, 9172764 - 9172607
Alignment:
| Q |
380 |
aaccttatcaagaactaaaggcttcatctgagccaatttagcttctttataagctttatactcattcaaatccatatccctcaaaggaatcaaccctctt |
479 |
Q |
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||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||| |||||| ||| |
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| T |
9172764 |
aaccttatcaagaaccaaaggcgtcaactgagccaatttagcttctttataagctttatactcgttcgaatcaatatccctcaaatgaaccaacccactt |
9172665 |
T |
|
| Q |
480 |
ttcttcttcataactttactattaaactcaatctcttgtgctatcttacgccgttctt |
537 |
Q |
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| T |
9172664 |
ttcttcttcataaaattactattaaactcaaactcttgagctatcttacgccgttctt |
9172607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 493 - 560
Target Start/End: Complemental strand, 9172561 - 9172494
Alignment:
| Q |
493 |
ctttactattaaactcaatctcttgtgctatcttacgccgttctttcttcgttatgtttatctctgct |
560 |
Q |
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||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| ||||| |
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| T |
9172561 |
ctttactattaaactcaatctcttgagctatcttaggctgttctttcttcgttatgtttatccctgct |
9172494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 493 - 537
Target Start/End: Complemental strand, 9172606 - 9172562
Alignment:
| Q |
493 |
ctttactattaaactcaatctcttgtgctatcttacgccgttctt |
537 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
9172606 |
ctttactattaaactcaaactcttgagctatcttacgccgttctt |
9172562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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