View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11486_low_5 (Length: 507)
Name: NF11486_low_5
Description: NF11486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11486_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 506079 - 506574
Alignment:
| Q |
1 |
cagcgacccattttccatctttcaccaattgtaaacctccaacttgatcttgatataatatggtaaggaagtcactatcagtatgtggcattaggccatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
506079 |
cagcgacccattttccatctttcaccaattgtaaacctccaacttgatcttgatataatatggtaaggaagtcactatcagtatgtggcattaggccatg |
506178 |
T |
|
| Q |
101 |
aatcctaaaatcaatgggacatggaggatatctgttcaatctaagataacatgtgttgggcaagcaattctccttaaagaaagatgattggtgacccaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
506179 |
aatcctaaaatcaatgggacatggaggatatctgttcaatctaagataacatgtgttgggcaagcaattctccttaaagaaagatgattggtgacccaat |
506278 |
T |
|
| Q |
201 |
ttctctgctaggatattagctaatatttgtgcaaggttggaaactgtgctagcaaattgttcaattattgaactgcaaatgcaaacataaaacttagtta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
506279 |
ttctctgctaggatattagctaatatttgtgcaaggttggaaactgtggtagcaaattgttcaattattgaactgcaaatgcaaacataaaagttagtta |
506378 |
T |
|
| Q |
301 |
ggataattggtttatcatatttgtctatggtattgcaactaacaagcaggatgttgcatnnnnnnnnnncagaatgttcaatttcacttattaatatgtg |
400 |
Q |
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| T |
506379 |
ggataattggtttaccacatttgtctatggtattgcaactaacaagcaggatgtcgcataaacaaaaat-agaatgttcaatttcaattattaatatgtg |
506477 |
T |
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| Q |
401 |
cgcccccttttttctggtttttggtggtttaattgattggggtgtttcgcctgtatacggcaccctgatgtttttgtattgttgtttttattggcct |
497 |
Q |
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| T |
506478 |
cgcccccttttttctggtttttggtggtttatttgattggggtgtttcgcctatatacggcaccctgatgtttttgtattgttgtttttattggcct |
506574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 16702920 - 16703181
Alignment:
| Q |
18 |
tctttcaccaattgtaaacctccaacttgatcttgatataatatggtaaggaagtcactatcagtatgtggcattaggccatgaatcctaaaatcaatgg |
117 |
Q |
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|||||||||||||| || ||||| |||||||||||||| ||||| || ||||||||||||||||| ||||||||||| ||||||||| | || | || | |
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| T |
16702920 |
tctttcaccaattgcaatcctcctacttgatcttgatacaatatagttaggaagtcactatcagtgtgtggcattagaccatgaatctcagaagctatag |
16703019 |
T |
|
| Q |
118 |
gacatggaggatatctgttcaatctaagataacatgtgttgggcaagcaattctccttaaagaaagatgattggtgacccaatttctctgctaggatatt |
217 |
Q |
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| T |
16703020 |
gacatggaggatatctgttcaatcgaagataacaagtattgggcaagcaattctccttaaaataagttgattcatgccccattttttcagctagaatatg |
16703119 |
T |
|
| Q |
218 |
agctaatatttgtgcaaggttggaaactgtgctagcaaattgttcaattattgaactgcaaa |
279 |
Q |
| |
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|||||| |||||||||||||||| | || ||||||||||||||||| |||| ||||||| |
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| T |
16703120 |
agctaaagtttgtgcaaggttggatgatatgatagcaaattgttcaattgttgatctgcaaa |
16703181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 17677156 - 17677417
Alignment:
| Q |
18 |
tctttcaccaattgtaaacctccaacttgatcttgatataatatggtaaggaagtcactatcagtatgtggcattaggccatgaatcctaaaatcaatgg |
117 |
Q |
| |
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|||||||||||||| || ||||| |||||||||||||| ||||| || ||||||||||||||||| ||||||||||| ||||||||| | || | || | |
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| T |
17677156 |
tctttcaccaattgcaatcctcctacttgatcttgatacaatatagttaggaagtcactatcagtgtgtggcattagaccatgaatctcagaagctatag |
17677255 |
T |
|
| Q |
118 |
gacatggaggatatctgttcaatctaagataacatgtgttgggcaagcaattctccttaaagaaagatgattggtgacccaatttctctgctaggatatt |
217 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| ||| ||||| || |||| ||| || ||||| |||| |
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| T |
17677256 |
gacatggaggatatctgttcaatcgaagataacaagtattgggcaagcaattctccttaaaataagttgattcatgccccattttttcagctagaatatg |
17677355 |
T |
|
| Q |
218 |
agctaatatttgtgcaaggttggaaactgtgctagcaaattgttcaattattgaactgcaaa |
279 |
Q |
| |
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|||||| |||||||||||||||| | || ||||||||||||||||| |||| ||||||| |
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| T |
17677356 |
agctaaagtttgtgcaaggttggatgatatgatagcaaattgttcaattgttgatctgcaaa |
17677417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 489
Target Start/End: Original strand, 5179622 - 5179718
Alignment:
| Q |
394 |
atatgtgcgcccccttt-tttctggtttttggtggtttaattgattggggtgtttcgcctgtatacggcaccctg-atgtttttgtattgttgttttt |
489 |
Q |
| |
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|||| ||||||||| || ||| ||||||||| |||||| || | |||||||||| ||||| |||||||||||||| || ||||||| |||||||||| |
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| T |
5179622 |
atatttgcgcccccattgtttatggtttttgttggttttatgg-ttggggtgttccgcctatatacggcaccctgtttgattttgtactgttgttttt |
5179718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 489
Target Start/End: Original strand, 3595067 - 3595159
Alignment:
| Q |
397 |
tgtgcgcccccttttttctggtttttggtggtttaattgattggggtgtttcgcctgtatacggcaccctg-atgtttttgtattgttgttttt |
489 |
Q |
| |
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||||| |||| ||||||||||||||||||||||| || | ||||||||| ||||| || | ||||||||| ||||||| ||||||||||||| |
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| T |
3595067 |
tgtgccccccattttttctggtttttggtggttttatag-ttggggtgtgccgcctatagaaggcaccctgtttgtttttatattgttgttttt |
3595159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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