View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11486_low_6 (Length: 500)

Name: NF11486_low_6
Description: NF11486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11486_low_6
NF11486_low_6
[»] chr7 (2 HSPs)
chr7 (20-495)||(33274005-33274480)
chr7 (252-412)||(3160216-3160376)
[»] chr6 (3 HSPs)
chr6 (179-417)||(10029918-10030156)
chr6 (282-412)||(4038684-4038814)
chr6 (280-344)||(10554660-10554724)
[»] chr8 (2 HSPs)
chr8 (282-408)||(12508608-12508734)
chr8 (282-415)||(35665872-35666005)
[»] chr4 (5 HSPs)
chr4 (285-331)||(2428679-2428725)
chr4 (281-397)||(32072592-32072708)
chr4 (359-397)||(46024060-46024098)
chr4 (359-397)||(46265269-46265307)
chr4 (282-339)||(47101350-47101407)
[»] chr2 (2 HSPs)
chr2 (290-328)||(15403650-15403688)
chr2 (285-331)||(44648686-44648732)
[»] chr3 (1 HSPs)
chr3 (282-331)||(43490075-43490124)


Alignment Details
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 20 - 495
Target Start/End: Original strand, 33274005 - 33274480
Alignment:
Q  20 gtaagcatcctcaaatagttctgtatttcgagtagcacaggtcgaaagagtgctctccttgttatcatcattgcttgtaattgtactagtattactaatg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33274005 gtaagcatcctcaaatagttctgtatttcgagtagcacaggtcgaaagagtgctctccttgttatcatcattgcttgtaattgtactagtattactaatg 33274104  T
Q  120 gtagttttgctgttacttggagcagaagcaacagcgccatcttcctgttttttgtcgccttttctgttgttaagaagatttcttatcctggaagcaagag 219  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33274105 gtagttttgctgttacttggagcagaagcaacagcaccatcttcctgttttttgtcgccttttctgttgttaagaagatttcttatcctggaagcaagag 33274204  T
Q  220 gagaatccaatgagacatgagtgatgaagttggttcgagtgttcgaacctcgaagaaggcatgcagcttcatcataagctctagctgcttcctcagctgt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33274205 gagaatccaatgagacatgagtgatgaagttggttcgagtgttcgaacctcgaagaaggcatgcagcttcatcataagctctagctgcttcctcagctgt 33274304  T
Q  320 ctcaaatgttccaagccacattcttatcttctgagttgtgtctttgatctcagctacccatctccctgatggcctttgtctaacaccaacaaacttgttt 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33274305 ctcaaatgttccaagccacattcttatcttctgagttgtgtctttgatctcagctacccatctccctgatggcctttgcctaacaccaacaaacttgttt 33274404  T
Q  420 gtgttgttgctgtttctgtttcttcctttgaattttcctcctttgttggttactgaaattcctgctctctgcttct 495  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  33274405 gtgttattgctgtttctgtttcttcctttgaattttcctcctttgttggttactgaaattcctgctttctgattct 33274480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 252 - 412
Target Start/End: Complemental strand, 3160376 - 3160216
Alignment:
Q  252 gttcgagtgttcgaacctcgaagaaggcatgcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaagccacattcttatcttct 351  Q
    |||| |||||| ||||| ||||| |  ||||||||||||||||| ||||| || ||||| |||||||| ||||| ||||| | ||| | |||||||||||    
T  3160376 gttctagtgttggaaccgcgaagtatacatgcagcttcatcataggctcttgcagcttcttcagctgtatcaaaagttcctaaccaaactcttatcttct 3160277  T
Q  352 gagttgtgtctttgatctcagctacccatctccctgatggcctttgtctaacaccaacaaa 412  Q
    || | || ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||    
T  3160276 gaatggtatcttttatctcagctacccatcttcctgatggcctttgtctcacaccaacaaa 3160216  T

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Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 179 - 417
Target Start/End: Complemental strand, 10030156 - 10029918
Alignment:
Q  179 ttttctgttgttaagaagatttcttatcctggaagcaagaggagaatccaatgagacatgagtgatgaagttggttcgagtgttcgaacctcgaagaagg 278  Q
    ||||| |||||| ||||||| ||  ||||  ||||| ||||| |||||  | || ||||| |||| ||||||||| ||||| || ||||| ||||||||     
T  10030156 ttttcggttgttgagaagatgtcgaatccgagaagcgagaggggaatcataagaaacatgtgtgacgaagttggtacgagttttggaaccgcgaagaagt 10030057  T
Q  279 catgcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaagccacattcttatcttctgagttgtgtctttgatctcagctaccc 378  Q
       || ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || || |||||||| || |||||||| ||      
T  10030056 gtcgcggcttcatcataagctcttgctgcttcctcagctgtttcaaatgttccaagccacattcttatgttttgtgttgtgtcctttatctcagcaacat 10029957  T
Q  379 atctccctgatggcctttgtctaacaccaacaaacttgt 417  Q
    |||| |||||||| |||||||| || |||||||||||||    
T  10029956 atctacctgatggtctttgtctcaccccaacaaacttgt 10029918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 412
Target Start/End: Complemental strand, 4038814 - 4038684
Alignment:
Q  282 gcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaagccacattcttatcttctgagttgtgtctttgatctcagctacccatc 381  Q
    ||||| ||||||||||||||||| ||||| |||||||| ||||| ||||| | ||| | ||||||||| ||| | || ||||| |||||||| |||||||    
T  4038814 gcagcctcatcataagctctagcagcttcttcagctgtatcaaaagttcctaaccaaactcttatcttttgaatggtatctttaatctcagcaacccatc 4038715  T
Q  382 tccctgatggcctttgtctaacaccaacaaa 412  Q
    | || ||||||||||||| ||| ||||||||    
T  4038714 tacccgatggcctttgtcgaacgccaacaaa 4038684  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 344
Target Start/End: Complemental strand, 10554724 - 10554660
Alignment:
Q  280 atgcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaagccacattctt 344  Q
    |||||||||||||||||||  |||||||  | |||||||| ||||| || |||||||||| ||||    
T  10554724 atgcagcttcatcataagcagtagctgcagcttcagctgtttcaaaggtgccaagccacactctt 10554660  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 408
Target Start/End: Original strand, 12508608 - 12508734
Alignment:
Q  282 gcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaagccacattcttatcttctgagttgtgtctttgatctcagctacccatc 381  Q
    |||||||| || ||||||| ||| ||||| || | ||| ||| | ||||||||||| | |||||  |  |||| || |||||||||||||||||||||||    
T  12508608 gcagcttcgtcgtaagctcgagcagcttcttctggtgtgtcataggttccaagccataatcttacatgttgagatgagtctttgatctcagctacccatc 12508707  T
Q  382 tccctgatggcctttgtctaacaccaa 408  Q
    | ||||||||||||||||| |||||||    
T  12508708 tacctgatggcctttgtctcacaccaa 12508734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 415
Target Start/End: Complemental strand, 35666005 - 35665872
Alignment:
Q  282 gcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaagccacattcttatcttctgagttgtgtctttgatctcagctacccatc 381  Q
    ||||||||||| ||||||| ||| ||||||||||| || | | | || ||||||||||| || || ||||  | ||||||||| ||||| ||| |||||     
T  35666005 gcagcttcatcgtaagctcgagcagcttcctcagcagttttataggtaccaagccacatcctaatgttctttgatgtgtcttttatctctgctgcccatt 35665906  T
Q  382 tccctgatggcctttgtctaacaccaacaaactt 415  Q
    | ||||| |  |||||||| || |||||||||||    
T  35665905 ttcctgaagctctttgtctcactccaacaaactt 35665872  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 2428679 - 2428725
Alignment:
Q  285 gcttcatcataagctctagctgcttcctcagctgtctcaaatgttcc 331  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||    
T  2428679 gcttcatcatatgctctagctgcttcttcagctgtctcaaatgttcc 2428725  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 397
Target Start/End: Complemental strand, 32072708 - 32072592
Alignment:
Q  281 tgcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaagccacattcttatcttctgagttgtgtctttgatctcagctacccat 380  Q
    |||||| ||||||||||||||||| || || ||| | || ||| | || || | ||||| |||||| |||||  | ||||||||||||||||| ||||||    
T  32072708 tgcagcctcatcataagctctagcagcctcttcaccagtgtcataggtccccaaccacaatcttatgttctgtatggtgtctttgatctcagccacccat 32072609  T
Q  381 ctccctgatggcctttg 397  Q
    |||||||| || |||||    
T  32072608 ctccctgaaggtctttg 32072592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 397
Target Start/End: Complemental strand, 46024098 - 46024060
Alignment:
Q  359 gtctttgatctcagctacccatctccctgatggcctttg 397  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  46024098 gtctttgatctcagctatccatcttcctgatggcctttg 46024060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 397
Target Start/End: Original strand, 46265269 - 46265307
Alignment:
Q  359 gtctttgatctcagctacccatctccctgatggcctttg 397  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  46265269 gtctttgatctcagctatccatcttcctgatggcctttg 46265307  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 339
Target Start/End: Original strand, 47101350 - 47101407
Alignment:
Q  282 gcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaagccaca 339  Q
    ||||||| |||||| ||||| |||||||| || ||||| ||||||||||| |||||||    
T  47101350 gcagcttgatcatatgctcttgctgcttcttctgctgtttcaaatgttcctagccaca 47101407  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 15403688 - 15403650
Alignment:
Q  290 atcataagctctagctgcttcctcagctgtctcaaatgt 328  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  15403688 atcataagctctagctgcttcttcagctgtgtcaaatgt 15403650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 44648686 - 44648732
Alignment:
Q  285 gcttcatcataagctctagctgcttcctcagctgtctcaaatgttcc 331  Q
    ||||||||||| ||| |||||||||| |||||||| |||||||||||    
T  44648686 gcttcatcatatgctttagctgcttcttcagctgtttcaaatgttcc 44648732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 43490075 - 43490124
Alignment:
Q  282 gcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttcc 331  Q
    |||||||||||||| |||||||| ||| | |||||||| |||||||||||    
T  43490075 gcagcttcatcatatgctctagcagctgcttcagctgtttcaaatgttcc 43490124  T

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