View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11486_low_9 (Length: 306)
Name: NF11486_low_9
Description: NF11486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11486_low_9 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-144; HSPs: 32)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 292
Target Start/End: Complemental strand, 4617133 - 4616848
Alignment:
| Q |
7 |
gaagcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttg |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
4617133 |
gaagcaaaaggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttgaacaaagttattaaggatgtgttg |
4617034 |
T |
|
| Q |
107 |
cttaaacaaaattaaggcacgaggtcgtatcaaaatttttaggctattactatgctttgatgtactgtatttttaactatgtattgtttcaatatttaat |
206 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4617033 |
cttaaacaaaattaagccaggaggtcgtatcgaaatttttaggccattactatgctttgatgtactgtatttttaactatgtattgtttcaatatttaat |
4616934 |
T |
|
| Q |
207 |
ttgggtttattggtggattattggtaagtgtaccaaatcgtcaatcaaagtaataaatttctaagttcatattcagagtttatctt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4616933 |
ttgggtttattggtggattattggtaagtgtaccaaatcgtcaatcaaagtaataaatttctaagttcatattcagagtttatctt |
4616848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 4480804 - 4480691
Alignment:
| Q |
7 |
gaagcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttg |
106 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||| |||| ||||| |||||||||||||||||||||||||||||||| |||||||| || ||| |
|
|
| T |
4480804 |
gaagcaaaaggccatggagttgaagaagatggcagaggaggacacaagacctggtggttgttcatacatgaacttggacaaagtgattaaggaggtcttg |
4480705 |
T |
|
| Q |
107 |
cttaaacaaaatta |
120 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4480704 |
cttaaacaaaatta |
4480691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 4601897 - 4601787
Alignment:
| Q |
10 |
gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt |
109 |
Q |
| |
|
||||| |||||||||||||||||||| |||| |||||| |||||||| ||||||||||||||||| |||| ||||||||||||||||||| ||||||||| |
|
|
| T |
4601897 |
gcaaaaggccatggagttgaagaagatggcaaaggagagcactagactaggtggttgttcatacaagaacctggacaaagttattaaggaggtgttgctt |
4601798 |
T |
|
| Q |
110 |
aaacaaaatta |
120 |
Q |
| |
|
||||||||||| |
|
|
| T |
4601797 |
aaacaaaatta |
4601787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 4504421 - 4504523
Alignment:
| Q |
10 |
gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| |||||||| || |||||| |
|
|
| T |
4504421 |
gcaaaaggccatggagttgaagaagaaggcagaggaggacacaagacttggtggttgttcatacatgaacttggacaaagtgattaaggacgtcttgctt |
4504520 |
T |
|
| Q |
110 |
aaa |
112 |
Q |
| |
|
||| |
|
|
| T |
4504521 |
aaa |
4504523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 3171849 - 3171739
Alignment:
| Q |
10 |
gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | || ||| |||||||||||||||||||||||||| ||||| |||||||| || |||||| |
|
|
| T |
3171849 |
gcaaagggccatggagttgaagaagaaggcagaggaggatacaagatttggtggttgttcatacatgaacttggataaagtgattaaggaggtcttgctt |
3171750 |
T |
|
| Q |
110 |
aaacaaaatta |
120 |
Q |
| |
|
|||||| |||| |
|
|
| T |
3171749 |
aaacaatatta |
3171739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 4516429 - 4516319
Alignment:
| Q |
10 |
gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt |
109 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| ||||| |||||||| ||| |||| |
|
|
| T |
4516429 |
gcaaaaggccatggaattgaagaagaaggcagaggaggacacaagaccaggtggttgttcatatgtgaacttggaaaaagtgattaaggaggtgctgctc |
4516330 |
T |
|
| Q |
110 |
aaacaaaatta |
120 |
Q |
| |
|
||||||||||| |
|
|
| T |
4516329 |
aaacaaaatta |
4516319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 4505956 - 4505855
Alignment:
| Q |
19 |
catggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaat |
118 |
Q |
| |
|
|||||||||||| |||| |||| ||||| | || ||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4505956 |
catggagttgaaaaagagggcaaaggaggatacaagacctggtggttgttcattcatgaacttggacaaagttattaaggaggtgttgcttaaacaaaat |
4505857 |
T |
|
| Q |
119 |
ta |
120 |
Q |
| |
|
|| |
|
|
| T |
4505856 |
ta |
4505855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 4267201 - 4267295
Alignment:
| Q |
21 |
tggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaa |
115 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
4267201 |
tggagttgaagaggaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaa |
4267295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 4560614 - 4560506
Alignment:
| Q |
10 |
gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt |
109 |
Q |
| |
|
||||| |||||||||| ||||||| ||||| |||| | |||| ||||| || ||||||||||||||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
4560614 |
gcaaaaggccatggagctgaagaaaaaggcggaggtgtacacgagacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgctt |
4560515 |
T |
|
| Q |
110 |
aaacaaaat |
118 |
Q |
| |
|
||||||||| |
|
|
| T |
4560514 |
aaacaaaat |
4560506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 4493056 - 4492953
Alignment:
| Q |
17 |
gccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaa |
116 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| || ||||| || ||||||||||||| |
|
|
| T |
4493056 |
gccacggagttgaaaaagaaggcagaggaggacacagtacctggtggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaa |
4492957 |
T |
|
| Q |
117 |
atta |
120 |
Q |
| |
|
|||| |
|
|
| T |
4492956 |
atta |
4492953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 4592326 - 4592231
Alignment:
| Q |
23 |
gagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||||||| | || ||||| |||||||||||| ||||| |
|
|
| T |
4592326 |
gagttgaagaagaaggcagaggagaacacgagacctggaggttgttcatatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaat |
4592231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 4299788 - 4299874
Alignment:
| Q |
34 |
gaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaatta |
120 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
4299788 |
gaaggcagaggagaacactaatccaggtggttgttcgtacatgaacttggacaaagttattaaggaggttctgcttaaacaatatta |
4299874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 4571070 - 4570972
Alignment:
| Q |
20 |
atggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaat |
118 |
Q |
| |
|
|||||| ||||||||||||| |||||| |||| ||||| |||||||||||||||||||||||||| ||||| |||||||| || ||||||||| ||||| |
|
|
| T |
4571070 |
atggagatgaagaagaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaat |
4570972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 4626059 - 4625949
Alignment:
| Q |
10 |
gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||| |||| ||| | ||||| || || |||||| |
|
|
| T |
4626059 |
gcaaaaggccatggagttgaagaagaaggcagaggagaacattagtcccggtggttgttcatacatgaatatggataaactgattaatgatgtcttgctt |
4625960 |
T |
|
| Q |
110 |
aaacaaaatta |
120 |
Q |
| |
|
|||||| |||| |
|
|
| T |
4625959 |
aaacaatatta |
4625949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 4613742 - 4613850
Alignment:
| Q |
10 |
gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt |
109 |
Q |
| |
|
||||| ||| || |||||||||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||||||||| || || || ||| |||| |
|
|
| T |
4613742 |
gcaaaaggcaattgagttgaagaagaaggcagaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagtgatcaatgaggtgctgctg |
4613841 |
T |
|
| Q |
110 |
aaacaaaat |
118 |
Q |
| |
|
||||||||| |
|
|
| T |
4613842 |
aaacaaaat |
4613850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 4515155 - 4515255
Alignment:
| Q |
20 |
atggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaatt |
119 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||||||||| || || | ||||||| |||||||||||||||| || ||||| ||||||||||||||||||| |
|
|
| T |
4515155 |
atggagttgaaaaagaaggcagacgaggacactagacttggcgggtcttcatacttgaacttggacaaagtgatcaaggaggtgttgcttaaacaaaatt |
4515254 |
T |
|
| Q |
120 |
a |
120 |
Q |
| |
|
| |
|
|
| T |
4515255 |
a |
4515255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 4585744 - 4585636
Alignment:
| Q |
10 |
gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt |
109 |
Q |
| |
|
||||| ||| || ||||||||||||||||| |||||| |||| ||||| || |||||||||||||| |||||||| ||||| |||||||| || |||||| |
|
|
| T |
4585744 |
gcaaaaggcaatcgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacataaacttggaaaaagtgattaaggaggttttgctt |
4585645 |
T |
|
| Q |
110 |
aaacaaaat |
118 |
Q |
| |
|
||| ||||| |
|
|
| T |
4585644 |
aaataaaat |
4585636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 4622249 - 4622145
Alignment:
| Q |
11 |
caaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctta |
110 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| |||| || || || |||||||||||||||| ||||||||||||||||||||||| || |||||| |
|
|
| T |
4622249 |
caaaaggccatggagttgaaggagaaggcagatgagacgaccagccctggtggttgttcatacaacaacttggacaaagttattaaggaggtcatgctta |
4622150 |
T |
|
| Q |
111 |
aacaa |
115 |
Q |
| |
|
||||| |
|
|
| T |
4622149 |
aacaa |
4622145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 4557216 - 4557125
Alignment:
| Q |
27 |
tgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaat |
118 |
Q |
| |
|
|||||| |||||| |||||| |||| ||||| |||||||||||||||||||| ||||| ||||| |||||||| || ||||||||||||||| |
|
|
| T |
4557216 |
tgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaatttggaaaaagtgattaaggaggttttgcttaaacaaaat |
4557125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 4392063 - 4392161
Alignment:
| Q |
23 |
gagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaattaa |
121 |
Q |
| |
|
|||||||||||||||||| ||||| |||| |||| ||||||| ||||| |||||||||||||||| | |||||||| || ||||||||||| |||||| |
|
|
| T |
4392063 |
gagttgaagaagaaggcaaaggaggacacatgacctggtggttcttcattcatgaacttggacaaactgattaaggaggtcttgcttaaacataattaa |
4392161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 4490391 - 4490481
Alignment:
| Q |
22 |
ggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaa |
112 |
Q |
| |
|
|||||||||||||||||||| |||| |||| |||| |||||| ||||||||||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
4490391 |
ggagttgaagaagaaggcagcggaggacacgagactcggtggtagttcatacatgaacttggacaaagtgattaaggatgtcatgcttaaa |
4490481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 4563819 - 4563711
Alignment:
| Q |
10 |
gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt |
109 |
Q |
| |
|
||||| ||| || |||||||||||||| | ||||| ||||| ||| | || ||||||||||||||||||||||||||||| || ||||| || |||||| |
|
|
| T |
4563819 |
gcaaaaggcaattgagttgaagaagaaagtggaggaaaacacgagagctggaggttgttcatacatgaacttggacaaagtgatcaaggaggttttgctt |
4563720 |
T |
|
| Q |
110 |
aaacaaaat |
118 |
Q |
| |
|
||||||||| |
|
|
| T |
4563719 |
aaacaaaat |
4563711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 4579540 - 4579432
Alignment:
| Q |
10 |
gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt |
109 |
Q |
| |
|
||||| ||| || |||||||||||||||| |||||| |||| ||||| || || |||||||||||||||||||| ||||| |||||||| ||||| || |
|
|
| T |
4579540 |
gcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttactc |
4579441 |
T |
|
| Q |
110 |
aaacaaaat |
118 |
Q |
| |
|
||||||||| |
|
|
| T |
4579440 |
aaacaaaat |
4579432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 4260178 - 4260265
Alignment:
| Q |
10 |
gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaag |
97 |
Q |
| |
|
||||| || |||||||||||||| |||||||||||||||||| || ||| ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
4260178 |
gcaaaaggtcatggagttgaagaggaaggcagaggagaacaccagtccatctggttattcattgatgaacttggacaaagttattaag |
4260265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 4256636 - 4256741
Alignment:
| Q |
10 |
gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt |
109 |
Q |
| |
|
||||| || |||||| |||||||||||| ||||| ||||||| || |||| |||| ||||| |||||||||||||||||||||||||| || ||||| |
|
|
| T |
4256636 |
gcaaaaggtcatggaattgaagaagaagacagagaagaacaccagcccagctggtcattcattgatgaacttggacaaagttattaaggaggtcatgctt |
4256735 |
T |
|
| Q |
110 |
aaacaa |
115 |
Q |
| |
|
|||||| |
|
|
| T |
4256736 |
aaacaa |
4256741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 4574409 - 4574308
Alignment:
| Q |
17 |
gccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaa |
116 |
Q |
| |
|
||||| ||| |||||||||||| |||| | |||| ||||| || ||||||||||||| |||||||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
4574409 |
gccattgagctgaagaagaaggtggaggtggacacgagacctggaggttgttcatacacaaacttggagaaagtgattaaggaggtgttgcttaaacaaa |
4574310 |
T |
|
| Q |
117 |
at |
118 |
Q |
| |
|
|| |
|
|
| T |
4574309 |
at |
4574308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 4568143 - 4568072
Alignment:
| Q |
28 |
gaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaagga |
99 |
Q |
| |
|
|||||||||||||||| || |||| ||||| |||| || |||||||||||||||||||||||| |||||||| |
|
|
| T |
4568143 |
gaagaagaaggcagagaaggacacaagacctggtgattcttcatacatgaacttggacaaagtgattaagga |
4568072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 4461231 - 4461121
Alignment:
| Q |
10 |
gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt |
109 |
Q |
| |
|
||||| || |||||| || |||||||||| |||||| | || ||||| || ||| |||||||| ||||||||||||||| |||||||| || |||||| |
|
|
| T |
4461231 |
gcaaaaggtcatggaattcaagaagaaggtggaggaggataccagacctggaggtgtttcatacaagaacttggacaaagtcattaaggatgtcttgctt |
4461132 |
T |
|
| Q |
110 |
aaacaaaatta |
120 |
Q |
| |
|
||||||||||| |
|
|
| T |
4461131 |
aaacaaaatta |
4461121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 4606958 - 4607023
Alignment:
| Q |
53 |
agaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaat |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| |||||| | || ||||||||||||||| |
|
|
| T |
4606958 |
agaccaggtggtttttcatacatgaacttggaaaaagtgattaagaaggttttgcttaaacaaaat |
4607023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 4469902 - 4469809
Alignment:
| Q |
19 |
catggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaa |
112 |
Q |
| |
|
||||||||| |||||||||| |||||| | || ||||| || ||| |||||||| ||||||||||||||| |||||||| || ||||||||| |
|
|
| T |
4469902 |
catggagttcaagaagaaggtggaggaggataccagacctggaggtgtttcatacaagaacttggacaaagtcattaaggatgtcttgcttaaa |
4469809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 4598263 - 4598175
Alignment:
| Q |
26 |
ttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaaca |
114 |
Q |
| |
|
||||||| |||||| |||||| | || |||| || |||||||||||||||||||| || ||||| |||||||| ||||| |||||||| |
|
|
| T |
4598263 |
ttgaagatgaaggcggaggaggaaacgagacttggaggttgttcatacatgaacttagagaaagtgattaaggaggtgtttcttaaaca |
4598175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 4601715 - 4601643
Alignment:
| Q |
139 |
aaatttttaggctattactatgctttgatgtactgtatttttaactatgtattgtttcaatatttaatttggg |
211 |
Q |
| |
|
||||| ||| |||||||||||||||||||| | ||||||||| |||||||| | || ||||||| |||||||| |
|
|
| T |
4601715 |
aaattattaagctattactatgctttgatgcaatgtattttttactatgtactattccaatattgaatttggg |
4601643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 1674334 - 1674224
Alignment:
| Q |
10 |
gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt |
109 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1674334 |
gcaaaaggccatggaattgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgctt |
1674235 |
T |
|
| Q |
110 |
aaacaaaatta |
120 |
Q |
| |
|
||||||||||| |
|
|
| T |
1674234 |
aaacaaaatta |
1674224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 20863880 - 20863975
Alignment:
| Q |
23 |
gagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaat |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| | ||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
20863880 |
gagttgaagaagaaggcagaggaggacacaagaccggaaggtggttcatatatgaacttggacaaagtgattaaggaggtgttgcttaaacaaaat |
20863975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 16686334 - 16686399
Alignment:
| Q |
53 |
agaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaat |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||| |||| ||| || ||||||||||||||| |
|
|
| T |
16686334 |
agacctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat |
16686399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 28000123 - 28000233
Alignment:
| Q |
10 |
gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt |
109 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
28000123 |
gcaaaaggccatggagttgaagaaaaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgttt |
28000222 |
T |
|
| Q |
110 |
aaacaaaatta |
120 |
Q |
| |
|
||||||||||| |
|
|
| T |
28000223 |
aaacaaaatta |
28000233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 24103110 - 24103002
Alignment:
| Q |
7 |
gaagcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttg |
106 |
Q |
| |
|
|||||||| || | ||||||| |||||||||||||| |||||||| ||| | ||||||| ||||||||||||||||||||||||||||||||| || || |
|
|
| T |
24103110 |
gaagcaaaaggtcttggagttcaagaagaaggcagaagagaacacaagatctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatg |
24103011 |
T |
|
| Q |
107 |
cttaaacaa |
115 |
Q |
| |
|
||||||||| |
|
|
| T |
24103010 |
cttaaacaa |
24103002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 3743 - 3848
Alignment:
| Q |
10 |
gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt |
109 |
Q |
| |
|
||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| || |||||| |
|
|
| T |
3743 |
gcaaaaggccgtggagttaaagaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgctt |
3842 |
T |
|
| Q |
110 |
aaacaa |
115 |
Q |
| |
|
|||||| |
|
|
| T |
3843 |
aaacaa |
3848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 1281216 - 1281112
Alignment:
| Q |
16 |
ggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaa |
115 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| |
|
|
| T |
1281216 |
ggccatggaattgaagaaggcggcggaggagaacactagaccgggtggttgttcatacatgaacttcgacaaagtgattaaggaaatgttgcttaaacaa |
1281117 |
T |
|
| Q |
116 |
aatta |
120 |
Q |
| |
|
||||| |
|
|
| T |
1281116 |
aatta |
1281112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 4710 - 4815
Alignment:
| Q |
10 |
gcaaagggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgctt |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
4710 |
gcaaaaggccatggagttgaagaagaaggcagaggagaacaccagttctggtggctgttcatacatgaacttggacaaagtgattaaggaggtcatgctt |
4809 |
T |
|
| Q |
110 |
aaacaa |
115 |
Q |
| |
|
|||||| |
|
|
| T |
4810 |
aaacaa |
4815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 3086515 - 3086417
Alignment:
| Q |
23 |
gagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagttattaaggaagtgttgcttaaacaaaattaa |
121 |
Q |
| |
|
||||| |||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||||| || ||||| |
|
|
| T |
3086515 |
gagttaaagaagaaagcagaagagaacaccagtatcggtggttgttcatacatgaacttggacaaagttattaaggaggtcttgcttaaaaaatattaa |
3086417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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