View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11487_high_3 (Length: 418)
Name: NF11487_high_3
Description: NF11487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11487_high_3 |
 | |
|
| [»] scaffold1004 (1 HSPs) |
| | |
|
| [»] scaffold0760 (1 HSPs) |
| | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 15 - 403
Target Start/End: Complemental strand, 33026521 - 33026133
Alignment:
| Q |
15 |
gacacaggaagaactcacattgtcgaacgacatccaattaacagtgccactcacaaatattccaaatcgatcaaacgggccattatatgggaagtctggt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33026521 |
gacacaggaagaactcacattgtcgaacgacatccaattaacagtgccactcaaaaatattccaaatcgatcaaacgggccattatatgggaagtctggt |
33026422 |
T |
|
| Q |
115 |
atccttctccaagtatctgtacccaaagtatgaacacttacttcctctctatcctccacaagagaaactgcaacaatcttatacttatcagtgcaatgat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33026421 |
atccttctccaagtatctgtacccaaagtatgaacacttacttcctctctatcctccacaagagaaactgcaacaatcttatacttatcactgcaatgat |
33026322 |
T |
|
| Q |
215 |
catacccgaagctatacgcggagaaaggtttgttatccaaggtaggtaatatcttaaacgctttaatggaaggattccacaaaataggtggactcacatc |
314 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||||| || || | | ||||||||||||||||||||| |||||||| |||| | |
|
|
| T |
33026321 |
catacccgaagttatacgcggagaaaggtttgttatccaagggaggtaatattttgaatgttctaatggaaggattccacaaaacaggtggacccacacc |
33026222 |
T |
|
| Q |
315 |
ataaccaatatacattgtgaaacaaaggatgccatcgcaagagcacacgtacaaaggagaatcatattcaattttgagacaatcagggt |
403 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33026221 |
aggaccgctatacattgtgaaacaaaggatgccatcgcaagagcacacgtaaaaaggagaatcatattcaattttgagacaatcagggt |
33026133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 23 - 403
Target Start/End: Complemental strand, 33038010 - 33037630
Alignment:
| Q |
23 |
aagaactcacattgtcgaacgacatccaattaacagtgccactcacaaatattccaaatcgatcaaacgggccattatatgggaagtctggtatccttct |
122 |
Q |
| |
|
|||||||||| | ||| ||||||| ||||||||||||||||| |||||||||||| | | | |||||||||| |||||||||||||||||||||||| |
|
|
| T |
33038010 |
aagaactcacttcgtctaacgacaaccaattaacagtgccaccgacaaatattccatacccacaaaacgggccagaatatgggaagtctggtatccttct |
33037911 |
T |
|
| Q |
123 |
ccaagtatctgtacccaaagtatgaacacttacttcctctctatcctccacaagagaaactgcaacaatcttatacttatcagtgcaatgatcatacccg |
222 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
33037910 |
ccaagtatccgtacccaaagtatgaacacttacttcctctctgtcctccacaagagagattgcaacaatcttatacttatcaatgcaatgatcataaccg |
33037811 |
T |
|
| Q |
223 |
aagctatacgcggagaaaggtttgttatccaaggtaggtaatatcttaaacgctttaatggaaggattccacaaaataggtggactcacatcataaccaa |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| || || | | ||||||||||||||||||||| |||||||| |||| || ||| |
|
|
| T |
33037810 |
aagctatacgcggagaaaggtttgttatccaagggaggtaatattttgaatgttctaatggaaggattccacaaaacaggtggacccacaccaggaccgt |
33037711 |
T |
|
| Q |
323 |
tatacattgtgaaacaaaggatgccatcgcaagagcacacgtacaaaggagaatcatattcaattttgagacaatcagggt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33037710 |
tatacattgtgaaacaaaggatgccatcgcaagagcgcgcgtgcaaaggagaatcatattcaattttgagacaatcagggt |
33037630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 172 - 403
Target Start/End: Complemental strand, 33019967 - 33019736
Alignment:
| Q |
172 |
acaagagaaactgcaacaatcttatacttatcagtgcaatgatcatacccgaagctatacgcggagaaaggtttgttatccaaggtaggtaatatcttaa |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || | |||||||||||||||||||| |||||||| |||||||||||| | |||||||||||||| |
|
|
| T |
33019967 |
acaagagaaactgcaacaatcttatacttatcaatgtagtgatcatacccgaagctatatatggagaaagctttgttatccaatggaggtaatatcttaa |
33019868 |
T |
|
| Q |
272 |
acgctttaatggaaggattccacaaaataggtggactcacatcataaccaatatacattgtgaaacaaaggatgccatcgcaagagcacacgtacaaagg |
371 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33019867 |
acgctctaatggaaggattccacaaaataggtggactcacatcataaccaatatacattgtgaaacaaaggatgccatcacaagagcacacgtacaaagg |
33019768 |
T |
|
| Q |
372 |
agaatcatattcaattttgagacaatcagggt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
33019767 |
agaatcatattcaattttgagacaatcagggt |
33019736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 48 - 266
Target Start/End: Complemental strand, 33024013 - 33023795
Alignment:
| Q |
48 |
ccaattaacagtgccactcacaaatattccaaatcgatcaaacgggccattatatgggaagtctggtatccttctccaagtatctgtacccaaagtatga |
147 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| || | | ||||| |||| ||||||||||| ||| ||||||| ||| |||| ||| ||||||||||| |
|
|
| T |
33024013 |
ccaattaacattgcgactcacaaatattcccaacccacaaaacgagccaaaatatgggaagtttggcatccttcaccatgtattcgtatccaaagtatga |
33023914 |
T |
|
| Q |
148 |
acacttacttcctctctatcctccacaagagaaactgcaacaatcttatacttatcagtgcaatgatcatacccgaagctatacgcggagaaaggtttgt |
247 |
Q |
| |
|
|| | ||||| || | ||||| ||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| |||||||||| | |
|
|
| T |
33023913 |
acgcaaacttcagctttgtcctcaacaagagaaactgcaacaatcttatacttatcaatgcaatgatcatacacggagctatacgctaagaaaggtttat |
33023814 |
T |
|
| Q |
248 |
tatccaaggtaggtaatat |
266 |
Q |
| |
|
|||||| | ||||||||| |
|
|
| T |
33023813 |
catccaaaggaggtaatat |
33023795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 33020180 - 33020038
Alignment:
| Q |
15 |
gacacaggaagaactcacattgtcgaacgacatccaattaacagtgccactcacaaatattccaaatcgatcaaacgggccattatatgggaagtctggt |
114 |
Q |
| |
|
|||||| | ||||||||||| ||||| | || ||||||||| ||||||||||||||||||||| | | | | |||||||| | |||||||||||||| |
|
|
| T |
33020180 |
gacacacggagaactcacatcttcgaatgccaaccaattaactgtgccactcacaaatattccatacccacgacacgggccaaaacatgggaagtctggt |
33020081 |
T |
|
| Q |
115 |
atccttctccaagtatctgtacccaaagtatgaacacttactt |
157 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33020080 |
atccttctccaagtatccgtacccaaagtatgaacacttactt |
33020038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 33023765 - 33023717
Alignment:
| Q |
355 |
gagcacacgtacaaaggagaatcatattcaattttgagacaatcagggt |
403 |
Q |
| |
|
|||||| || |||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
33023765 |
gagcacgcgaacaaaggagaattgtattcaattttgagacaattagggt |
33023717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 24417700 - 24417804
Alignment:
| Q |
48 |
ccaattaacagtgccactcacaaatattccaaatcgatcaaacgggccattatatgggaagtctggtatccttctccaagtatctgtacccaaagtatga |
147 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || |||| ||| ||| | ||||||||||||| ||||| ||||||||| ||||||||||| |||||| |
|
|
| T |
24417700 |
ccaattaatagtgccactcacaaatattcccaaccgatgtaactggcgagaatatgggaagtcttgtatcgttctccaagaatctgtacccagggtatga |
24417799 |
T |
|
| Q |
148 |
acact |
152 |
Q |
| |
|
||||| |
|
|
| T |
24417800 |
acact |
24417804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1004 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1004
Description:
Target: scaffold1004; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 298
Target Start/End: Complemental strand, 1977 - 1727
Alignment:
| Q |
48 |
ccaattaacagtgccactcacaaatattccaaatcgatcaaacgggccattatatgggaagtctggtatccttctccaagtatctgtacccaaagtatga |
147 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| | | | ||||| | | ||||||||||||| ||||| || |||||| || ||||||||||||||| |
|
|
| T |
1977 |
ccaattaacattgccattcacaaatattcctgacccacataacggactagtatatgggaagtcatgtatctttatccaagaatacgtacccaaagtatga |
1878 |
T |
|
| Q |
148 |
acacttacttcctctctatcctccacaagagaaactgcaacaatcttatacttatcagtgcaatgatcatacccgaagctatacgcggagaaaggtttgt |
247 |
Q |
| |
|
||||| ||||| | | |||| |||||||| |||||||||||||| |||| | | |||||||||||||||| ||||| ||||| ||| |||| | |
|
|
| T |
1877 |
acactaacttctgttttgtccttacaaagagaaagagcaacaatcttataattattaattaaatgatcatacccgaaactataagcggataaatgtttat |
1778 |
T |
|
| Q |
248 |
tatccaaggtaggtaatatcttaaacgctttaatggaaggattccacaaaa |
298 |
Q |
| |
|
|||||| | ||| || ||||| || | | |||||||||| |||||||||| |
|
|
| T |
1777 |
catccaaaggaggcaaaatcttgaatgttctaatggaagggttccacaaaa |
1727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0760 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0760
Description:
Target: scaffold0760; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 298
Target Start/End: Complemental strand, 4472 - 4222
Alignment:
| Q |
48 |
ccaattaacagtgccactcacaaatattccaaatcgatcaaacgggccattatatgggaagtctggtatccttctccaagtatctgtacccaaagtatga |
147 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| | | | ||||| | | ||||||||||||| ||||| || |||||| || ||||||||||||||| |
|
|
| T |
4472 |
ccaattaacattgccattcacaaatattcctgacccacataacggactagtatatgggaagtcatgtatctttatccaagaatacgtacccaaagtatga |
4373 |
T |
|
| Q |
148 |
acacttacttcctctctatcctccacaagagaaactgcaacaatcttatacttatcagtgcaatgatcatacccgaagctatacgcggagaaaggtttgt |
247 |
Q |
| |
|
||||| ||||| | | |||| |||||||| |||||||||||||| |||| | | ||| |||||||||||| ||||| ||||| ||| |||| | |
|
|
| T |
4372 |
acactaacttctgttttgtccttacaaagagaaagagcaacaatcttataattattaattaaattatcatacccgaaactataagcggataaatgtttat |
4273 |
T |
|
| Q |
248 |
tatccaaggtaggtaatatcttaaacgctttaatggaaggattccacaaaa |
298 |
Q |
| |
|
|||||| | ||| || ||||| || | | |||||||||| |||||||||| |
|
|
| T |
4272 |
catccaaaggaggcaaaatcttgaatgttctaatggaagggttccacaaaa |
4222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 9608626 - 9608683
Alignment:
| Q |
101 |
atgggaagtctggtatccttctccaagtatctgtacccaaagtatgaacacttacttc |
158 |
Q |
| |
|
||||||||||| |||||||||||||| ||| || ||||||||||||||||| ||||| |
|
|
| T |
9608626 |
atgggaagtcttgtatccttctccaataatcagtgcccaaagtatgaacactaacttc |
9608683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 771770 - 771810
Alignment:
| Q |
99 |
atatgggaagtctggtatccttctccaagtatctgtaccca |
139 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
771770 |
atatgggaagtcttgtatccttctccaagaatctgtaccca |
771810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 784070 - 784123
Alignment:
| Q |
99 |
atatgggaagtctggtatccttctccaagtatctgtacccaaagtatgaacact |
152 |
Q |
| |
|
||||||||||||| | ||||| ||||||| ||| ||||||||||||| |||||| |
|
|
| T |
784070 |
atatgggaagtcttggatcctcctccaagaatcggtacccaaagtataaacact |
784123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 7443203 - 7443236
Alignment:
| Q |
45 |
catccaattaacagtgccactcacaaatattcca |
78 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
7443203 |
catccaattaacagtgccacccacaaatattcca |
7443236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 9587459 - 9587512
Alignment:
| Q |
99 |
atatgggaagtctggtatccttctccaagtatctgtacccaaagtatgaacact |
152 |
Q |
| |
|
||||||||||||| | ||||| |||||||||| ||||||||||||| |||||| |
|
|
| T |
9587459 |
atatgggaagtcttggatcctcctccaagtattggtacccaaagtataaacact |
9587512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 88971 - 88876
Alignment:
| Q |
48 |
ccaattaacagtgccactcacaaatattccaaatcgatcaaacgggccattatatgggaagtctggtatccttctccaagtatctgtacccaaagt |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || || || |||| ||||||||||||| ||| ||||||||| ||| ||||| ||||| |
|
|
| T |
88971 |
ccaattaacagtgccactcacaaatattcccgattcatgtaagggaccatcatatgggaagtcttttattcttctccaataatcagtacctaaagt |
88876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University