View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11487_low_1 (Length: 1238)

Name: NF11487_low_1
Description: NF11487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11487_low_1
NF11487_low_1
[»] chr3 (28 HSPs)
chr3 (20-549)||(34897409-34897940)
chr3 (690-1219)||(34897409-34897940)
chr3 (614-712)||(1995475-1995573)
chr3 (527-615)||(1995485-1995573)
chr3 (627-701)||(52859272-52859346)
chr3 (538-612)||(52859272-52859346)
chr3 (611-697)||(10474400-10474485)
chr3 (611-660)||(33632850-33632899)
chr3 (627-694)||(44637986-44638052)
chr3 (545-612)||(44637986-44638052)
chr3 (614-656)||(2230014-2230056)
chr3 (542-616)||(10474400-10474473)
chr3 (611-661)||(54911682-54911732)
chr3 (614-695)||(27033682-27033763)
chr3 (542-611)||(30235416-30235484)
chr3 (628-697)||(30235416-30235484)
chr3 (579-612)||(33632866-33632899)
chr3 (627-695)||(29586380-29586447)
chr3 (544-612)||(29586380-29586447)
chr3 (611-695)||(51982549-51982632)
chr3 (628-695)||(24754702-24754769)
chr3 (544-611)||(24754702-24754769)
chr3 (628-695)||(24763699-24763766)
chr3 (544-611)||(24763699-24763766)
chr3 (614-656)||(34373862-34373904)
chr3 (611-652)||(25285843-25285884)
chr3 (614-695)||(43719910-43719991)
chr3 (544-609)||(51982549-51982613)
[»] chr6 (15 HSPs)
chr6 (614-703)||(7215807-7215896)
chr6 (611-703)||(2800566-2800658)
chr6 (536-612)||(2800566-2800642)
chr6 (536-612)||(7215807-7215883)
chr6 (614-704)||(4804479-4804569)
chr6 (544-612)||(17828532-17828599)
chr6 (627-695)||(17828532-17828599)
chr6 (537-579)||(9952993-9953035)
chr6 (660-702)||(9952993-9953035)
chr6 (535-611)||(4804493-4804569)
chr6 (616-695)||(7162117-7162196)
chr6 (614-695)||(227526-227608)
chr6 (614-652)||(9954332-9954370)
chr6 (635-693)||(23936305-23936365)
chr6 (546-604)||(23936305-23936365)
[»] chr1 (16 HSPs)
chr1 (614-703)||(39426241-39426330)
chr1 (536-612)||(39426254-39426330)
chr1 (615-701)||(35534741-35534825)
chr1 (611-704)||(32887735-32887827)
chr1 (538-612)||(35534741-35534813)
chr1 (535-608)||(32887735-32887807)
chr1 (617-699)||(26860010-26860091)
chr1 (540-612)||(26860010-26860081)
chr1 (611-695)||(26372280-26372362)
chr1 (614-695)||(50294026-50294107)
chr1 (544-610)||(26372298-26372362)
chr1 (611-656)||(7840681-7840726)
chr1 (544-611)||(50294026-50294093)
chr1 (614-660)||(5047379-5047425)
chr1 (545-599)||(49384627-49384680)
chr1 (640-694)||(49384627-49384680)
[»] chr8 (18 HSPs)
chr8 (614-701)||(42761744-42761831)
chr8 (538-612)||(42761757-42761831)
chr8 (611-704)||(21360304-21360400)
chr8 (535-614)||(21360318-21360400)
chr8 (611-678)||(18689519-18689585)
chr8 (611-678)||(24557162-24557228)
chr8 (542-612)||(42338008-42338077)
chr8 (627-697)||(42338008-42338077)
chr8 (614-705)||(37966397-37966487)
chr8 (640-706)||(20169125-20169190)
chr8 (533-599)||(20169125-20169190)
chr8 (614-656)||(30426671-30426713)
chr8 (611-695)||(6014222-6014307)
chr8 (627-660)||(17520426-17520459)
chr8 (579-612)||(17520426-17520459)
chr8 (614-695)||(28069750-28069831)
chr8 (614-695)||(36991387-36991468)
chr8 (534-611)||(37966397-37966473)
[»] chr2 (30 HSPs)
chr2 (614-701)||(30709141-30709228)
chr2 (614-702)||(4446852-4446940)
chr2 (537-612)||(4446852-4446927)
chr2 (627-702)||(30217517-30217592)
chr2 (537-612)||(30217517-30217592)
chr2 (538-612)||(30709154-30709228)
chr2 (616-704)||(19908813-19908899)
chr2 (536-606)||(30721564-30721632)
chr2 (633-703)||(30721564-30721632)
chr2 (535-612)||(19908824-19908899)
chr2 (611-678)||(36929744-36929810)
chr2 (628-702)||(2063399-2063472)
chr2 (537-611)||(2063399-2063472)
chr2 (611-699)||(30857638-30857725)
chr2 (536-612)||(31618724-31618798)
chr2 (627-703)||(31618724-31618798)
chr2 (611-678)||(15709796-15709862)
chr2 (544-610)||(22061433-22061498)
chr2 (629-695)||(22061433-22061498)
chr2 (614-695)||(13238712-13238793)
chr2 (579-616)||(35315286-35315323)
chr2 (623-660)||(35315286-35315323)
chr2 (540-616)||(30857638-30857713)
chr2 (621-661)||(34512022-34512062)
chr2 (561-609)||(36929763-36929810)
chr2 (578-612)||(34512022-34512056)
chr2 (652-701)||(6946335-6946384)
chr2 (538-587)||(6946335-6946384)
chr2 (614-695)||(35316856-35316937)
chr2 (611-660)||(38397109-38397158)
[»] chr7 (26 HSPs)
chr7 (613-702)||(47270580-47270668)
chr7 (537-614)||(47270592-47270668)
chr7 (614-664)||(29844322-29844372)
chr7 (614-695)||(4888498-4888579)
chr7 (575-612)||(29844335-29844372)
chr7 (614-694)||(989160-989239)
chr7 (611-656)||(12139355-12139400)
chr7 (611-660)||(32915984-32916033)
chr7 (611-700)||(40023215-40023303)
chr7 (544-612)||(4888511-4888579)
chr7 (544-612)||(5463867-5463934)
chr7 (627-695)||(5463867-5463934)
chr7 (611-695)||(7712331-7712414)
chr7 (614-702)||(39855770-39855857)
chr7 (611-658)||(24193621-24193668)
chr7 (628-695)||(44648009-44648076)
chr7 (544-611)||(44648009-44648076)
chr7 (614-656)||(25084730-25084772)
chr7 (614-703)||(33450537-33450627)
chr7 (640-706)||(44390835-44390900)
chr7 (533-599)||(44390835-44390900)
chr7 (614-691)||(7362599-7362676)
chr7 (614-695)||(9559017-9559098)
chr7 (616-673)||(18064588-18064643)
chr7 (536-601)||(33450562-33450627)
chr7 (539-616)||(40023215-40023291)
[»] chr4 (26 HSPs)
chr4 (536-607)||(15178628-15178699)
chr4 (632-703)||(15178628-15178699)
chr4 (612-700)||(36532654-36532741)
chr4 (614-694)||(5815267-5815344)
chr4 (539-608)||(36532673-36532741)
chr4 (614-695)||(19901881-19901962)
chr4 (614-695)||(23610673-23610754)
chr4 (542-607)||(33841766-33841830)
chr4 (632-697)||(33841766-33841830)
chr4 (545-601)||(5815267-5815322)
chr4 (616-699)||(1871310-1871392)
chr4 (544-611)||(23610687-23610754)
chr4 (611-698)||(42844148-42844234)
chr4 (614-695)||(5416429-5416509)
chr4 (541-610)||(42844148-42844216)
chr4 (540-612)||(1871321-1871392)
chr4 (616-660)||(23474144-23474188)
chr4 (611-702)||(56453777-56453867)
chr4 (544-611)||(19901881-19901948)
chr4 (628-695)||(39862562-39862629)
chr4 (544-611)||(39862562-39862629)
chr4 (617-704)||(56558313-56558400)
chr4 (614-695)||(3952133-3952214)
chr4 (624-661)||(5817976-5818013)
chr4 (578-615)||(5817976-5818013)
chr4 (537-609)||(56453777-56453848)
[»] chr5 (19 HSPs)
chr5 (611-695)||(29341023-29341106)
chr5 (544-612)||(29341039-29341106)
chr5 (611-695)||(43309136-43309220)
chr5 (542-608)||(9460597-9460662)
chr5 (631-697)||(9460597-9460662)
chr5 (614-695)||(11775824-11775905)
chr5 (614-695)||(35660572-35660653)
chr5 (614-694)||(4895699-4895779)
chr5 (544-612)||(43309152-43309220)
chr5 (544-611)||(11775838-11775905)
chr5 (614-693)||(39902446-39902525)
chr5 (668-702)||(21213953-21213987)
chr5 (537-571)||(21213953-21213987)
chr5 (614-695)||(18625384-18625465)
chr5 (611-660)||(18653389-18653438)
chr5 (627-660)||(31653079-31653112)
chr5 (579-612)||(31653079-31653112)
chr5 (614-695)||(32129580-32129661)
chr5 (614-695)||(37266762-37266843)
[»] scaffold0062 (1 HSPs)
scaffold0062 (611-678)||(58708-58774)
[»] scaffold0250 (1 HSPs)
scaffold0250 (611-656)||(7175-7220)
[»] scaffold0121 (1 HSPs)
scaffold0121 (611-660)||(29567-29616)
[»] scaffold0012 (1 HSPs)
scaffold0012 (614-695)||(208094-208175)


Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 20 - 549
Target Start/End: Original strand, 34897409 - 34897940
Alignment:
Q  20 ggttacacatcaatggttcgtgactttatgcttagaaaatgcatgtttttatcctaagactataaaaaagcatgaagatgtaatgtaatcactcattcgc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34897409 ggttacacatcaatggttcgtgactttatgcttagaaaatgcatgtttttatcccaagactataaaaaagcatgaagatgtaatgtaatcactcattcgc 34897508  T
Q  120 ttgttgtgcacggtaaaaaggcatcttgtagtgatttactatatttt-aaatatataaataacgaaatagagaaataggagagataggtgagatttacta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34897509 ttgttgtgcacggtaaaaaggcatcttgtagtgatttactatatttttaaatatataaataacgaaatagagaaataggagagataggtgagatttacta 34897608  T
Q  219 tataaaaggcatcttatagtaatttactgtattttaaatataatttactatattataaaaaggcatcattgggacatgagttcggtgtggggagaggagg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34897609 tataaaaggcatcttatagtaatttactgtattttaaatataatttactatattataaaaaggcatcattgggacatgagttcggtgtggggagaggagg 34897708  T
Q  319 aataggagagatgatataaaaaccctctctccatttcttaaatgttgtagaaatggacaaatcagctgat-nnnnnnnntagaagtggacatcttcaata 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||    
T  34897709 aataggagagatgatataaaaaccctctctccatttcttaaatgttgtagaaatggacaaatcagctgataaaaaaaaatagaagtggacatcttcaata 34897808  T
Q  418 ccgttttgttcggtagaactataattttgatacaaatagaaaatatcattgtaaaaactgttttgtttttggagaatttgttggaatccaagtcaacatg 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34897809 ccgttttgttcggtagaactataattttgatacaaatagaaaatatcattgtaaaaactgttttgtttttggagaatttgtcggaatccaagtcaacatg 34897908  T
Q  518 taatagaggtgggtgagaggggttaggatcct 549  Q
    |||| |||||||||||||||||||||||||||    
T  34897909 taattgaggtgggtgagaggggttaggatcct 34897940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 690 - 1219
Target Start/End: Complemental strand, 34897940 - 34897409
Alignment:
Q  690 aggatcctaacccctctcacccacctctattacatgttgacttggattccaacaaattctccaaaaacaaaacagtttttacaatgatattttctatttg 789  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34897940 aggatcctaacccctctcacccacctcaattacatgttgacttggattccgacaaattctccaaaaacaaaacagtttttacaatgatattttctatttg 34897841  T
Q  790 tatcaaaattatagttctaccgaacaaaacggtattgaagatgtccacttctannnnnnnn-atcagctgatttgtccatttctacaacatttaagaaat 888  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  34897840 tatcaaaattatagttctaccgaacaaaacggtattgaagatgtccacttctatttttttttatcagctgatttgtccatttctacaacatttaagaaat 34897741  T
Q  889 ggagagagggtttttatatcatctctcctattcctcctctccccacaccgaactcatgtcccaatgatgcctttttataatatagtaaattatatttaaa 988  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34897740 ggagagagggtttttatatcatctctcctattcctcctctccccacaccgaactcatgtcccaatgatgcctttttataatatagtaaattatatttaaa 34897641  T
Q  989 atacagtaaattactataagatgccttttatatagtaaatctcacctatctctcctatttctctatttcgttatttatatattt-aaaatatagtaaatc 1087  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34897640 atacagtaaattactataagatgccttttatatagtaaatctcacctatctctcctatttctctatttcgttatttatatatttaaaaatatagtaaatc 34897541  T
Q  1088 actacaagatgcctttttaccgtgcacaacaagcgaatgagtgattacattacatcttcatgcttttttatagtcttaggataaaaacatgcattttcta 1187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34897540 actacaagatgcctttttaccgtgcacaacaagcgaatgagtgattacattacatcttcatgcttttttatagtcttgggataaaaacatgcattttcta 34897441  T
Q  1188 agcataaagtcacgaaccattgatgtgtaacc 1219  Q
    ||||||||||||||||||||||||||||||||    
T  34897440 agcataaagtcacgaaccattgatgtgtaacc 34897409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 614 - 712
Target Start/End: Original strand, 1995475 - 1995573
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctctcaccca 712  Q
    ||||||||| ||||||||||||| | ||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| | |||||||    
T  1995475 tggtaggactcattatctattttctatgtctatctctcttcaaattgtgtacttccatttatttgataaaatgaagaggatcctaacccatgtcaccca 1995573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 527 - 615
Target Start/End: Complemental strand, 1995573 - 1995485
Alignment:
Q  527 tgggtgagaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatg 615  Q
    ||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||| | |||||||||||||    
T  1995573 tgggtgacatgggttaggatcctcttcattttatcaaataaatggaagtacacaatttgaagagagatagacatagaaaatagataatg 1995485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 627 - 701
Target Start/End: Original strand, 52859272 - 52859346
Alignment:
Q  627 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 701  Q
    ||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||| |||||||| |||||    
T  52859272 tatctattttatgtgtctatctctctctaaattgtgtattttcatttattttatcaaatggagaggatcataacc 52859346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 538 - 612
Target Start/End: Complemental strand, 52859346 - 52859272
Alignment:
Q  538 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    ||||| |||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||    
T  52859346 ggttatgatcctctccatttgataaaataaatgaaaatacacaatttagagagagatagacacataaaatagata 52859272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 611 - 697
Target Start/End: Complemental strand, 10474485 - 10474400
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 697  Q
    |||| |||||| |||||||||||||||||||||||| |||||| ||||||  ||| |||||||||| | ||||||  ||||||||||    
T  10474485 taatagtaggatccattatctattttatgtgtctatatctctcaaaattgcatac-tccatttattatgtcaaatagagaggatcct 10474400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 611 - 660
Target Start/End: Original strand, 33632850 - 33632899
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattg 660  Q
    |||| |||||| ||| ||||||||||||||||||||||||||||||||||    
T  33632850 taatagtaggatccactatctattttatgtgtctatctctctccaaattg 33632899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 627 - 694
Target Start/End: Original strand, 44637986 - 44638052
Alignment:
Q  627 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 694  Q
    |||||||||||||||| |||||||||| ||||||  ||| |||||||||||| |||||||| ||||||    
T  44637986 tatctattttatgtgtttatctctctcaaaattgcatac-tccatttattttgtcaaatgatgaggat 44638052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 545 - 612
Target Start/End: Complemental strand, 44638052 - 44637986
Alignment:
Q  545 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    |||||| |||||||| |||||||||||| |||  |||||| |||||||||| ||||||||||||||||    
T  44638052 atcctcatcatttgacaaaataaatgga-gtatgcaattttgagagagataaacacataaaatagata 44637986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 614 - 656
Target Start/End: Original strand, 2230014 - 2230056
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaa 656  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  2230014 tggtaggacccatcatctattttttgtgtctatctctctccaa 2230056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 542 - 616
Target Start/End: Original strand, 10474400 - 10474473
Alignment:
Q  542 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgg 616  Q
    ||||||||||  |||||| | |||||||||| |||  |||||| |||||| ||||||||||||||||||||||||    
T  10474400 aggatcctctctatttgacataataaatgga-gtatgcaattttgagagatatagacacataaaatagataatgg 10474473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 611 - 661
Target Start/End: Original strand, 54911682 - 54911732
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattgt 661  Q
    ||||||||||||||| || ||||||||||| ||||||||||| ||||||||    
T  54911682 taatggtaggacccactacctattttatgtctctatctctcttcaaattgt 54911732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 614 - 695
Target Start/End: Original strand, 27033682 - 27033763
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||||||  ||||||||  ||||||||||||||||||| |||   |  |||||||||||||||||||| ||| ||||    
T  27033682 tggtaggacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatggagatgatc 27033763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 542 - 611
Target Start/End: Original strand, 30235416 - 30235484
Alignment:
Q  542 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 611  Q
    |||||| |||||||||| |||||||||||| ||||  ||||||| ||||||||||||| | |||||||||    
T  30235416 aggatcatcttcatttgttaaaataaatgg-agtatgcaatttgaagagagatagacataaaaaatagat 30235484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 628 - 697
Target Start/End: Complemental strand, 30235484 - 30235416
Alignment:
Q  628 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 697  Q
    ||||||||| | ||||||||||||| |||||||  |||| |||||||||||| |||||||||| ||||||    
T  30235484 atctattttttatgtctatctctcttcaaattgcatact-ccatttattttaacaaatgaagatgatcct 30235416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 579 - 612
Target Start/End: Complemental strand, 33632899 - 33632866
Alignment:
Q  579 caatttggagagagatagacacataaaatagata 612  Q
    ||||||||||||||||||||||||||||||||||    
T  33632899 caatttggagagagatagacacataaaatagata 33632866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 627 - 695
Target Start/End: Original strand, 29586380 - 29586447
Alignment:
Q  627 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||||||||||||||||||||||||| ||  ||| |||||||||| |   ||||||||||||||    
T  29586380 tatctattttatgtgtctatctctctccaaactgcatac-tccatttattatgctaaatgaagaggatc 29586447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 544 - 612
Target Start/End: Complemental strand, 29586447 - 29586380
Alignment:
Q  544 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    ||||||||||||||   | |||||||||| |||  || |||||||||||||||||||||||||||||||    
T  29586447 gatcctcttcatttagcataataaatgga-gtatgcagtttggagagagatagacacataaaatagata 29586380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 611 - 695
Target Start/End: Complemental strand, 51982632 - 51982549
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||| ||| ||||| || ||||||||||| |||||||||||||||||||  | ||||||||||||||   ||||| ||||||||    
T  51982632 taatgatagaacccactaactattttatgtatctatctctctccaaattgcat-cttccatttatttttataaatggagaggatc 51982549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 628 - 695
Target Start/End: Original strand, 24754702 - 24754769
Alignment:
Q  628 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||| ||||||||||||||||||| ||||  |  ||||||||||||  |||||| ||||||||    
T  24754702 atctattttgtgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatc 24754769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 544 - 611
Target Start/End: Complemental strand, 24754769 - 24754702
Alignment:
Q  544 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 611  Q
    |||||||| ||||||  ||||||||||||  |  |||| ||||||||||||||||||| |||||||||    
T  24754769 gatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagat 24754702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 628 - 695
Target Start/End: Original strand, 24763699 - 24763766
Alignment:
Q  628 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||| ||||||||||||||||||| ||||  |  ||||||||||||  |||||| ||||||||    
T  24763699 atctattttgtgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatc 24763766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 544 - 611
Target Start/End: Complemental strand, 24763766 - 24763699
Alignment:
Q  544 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 611  Q
    |||||||| ||||||  ||||||||||||  |  |||| ||||||||||||||||||| |||||||||    
T  24763766 gatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagat 24763699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 614 - 656
Target Start/End: Original strand, 34373862 - 34373904
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaa 656  Q
    ||||||||||||  ||||||||| |||||||||||||||||||    
T  34373862 tggtaggacccaccatctattttttgtgtctatctctctccaa 34373904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 611 - 652
Target Start/End: Complemental strand, 25285884 - 25285843
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctct 652  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||    
T  25285884 taatgataggatccactatctattttatgtgtctatctctct 25285843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 614 - 695
Target Start/End: Complemental strand, 43719991 - 43719910
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||||||  || |||||| ||||||||||||||||||| |||   |  |||||||||||| | ||||| ||||||||    
T  43719991 tggtaggacccacaatttattttttgtgtctatctctctccaacttgcaaaactccatttattttgttaaatggagaggatc 43719910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 544 - 609
Target Start/End: Original strand, 51982549 - 51982613
Alignment:
Q  544 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatag 609  Q
    |||||||| |||||   |||||||||||||| |  ||||||||||||||||||| |||||||||||    
T  51982549 gatcctctccatttataaaaataaatggaag-atgcaatttggagagagatagatacataaaatag 51982613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 2e-33; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 614 - 703
Target Start/End: Complemental strand, 7215896 - 7215807
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 703  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||    
T  7215896 tggtaggacccactatctattttatgtgtctatctctctccaaattgtgcacttccatttattttatcaaatggagaggatactaacccc 7215807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 611 - 703
Target Start/End: Complemental strand, 2800658 - 2800566
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 703  Q
    |||||||| || ||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  2800658 taatggtatgatccactatctattttatgtgtctatctctctccaaattgtgtatttccattaattttatcaaatggagaggatcctaacccc 2800566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 536 - 612
Target Start/End: Original strand, 2800566 - 2800642
Alignment:
Q  536 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  2800566 ggggttaggatcctctccatttgataaaattaatggaaatacacaatttggagagagatagacacataaaatagata 2800642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 536 - 612
Target Start/End: Original strand, 7215807 - 7215883
Alignment:
Q  536 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7215807 ggggttagtatcctctccatttgataaaataaatggaagtgcacaatttggagagagatagacacataaaatagata 7215883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 614 - 704
Target Start/End: Original strand, 4804479 - 4804569
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccct 704  Q
    ||||||||||||  ||||||||| ||||||||||||||||||| ||||  |  ||||||||||||  |||||| |||||||| | ||||||    
T  4804479 tggtaggacccaccatctattttttgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatcttcacccct 4804569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 544 - 612
Target Start/End: Original strand, 17828532 - 17828599
Alignment:
Q  544 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    |||||||| |||||| || ||||| |||| |||  ||||||||||||||||||||||||||||||||||    
T  17828532 gatcctctacatttggtataataattgga-gtatgcaatttggagagagatagacacataaaatagata 17828599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 627 - 695
Target Start/End: Complemental strand, 17828599 - 17828532
Alignment:
Q  627 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||||||||||||||||||||||||||||  ||| |||| ||||| || |||||| ||||||||    
T  17828599 tatctattttatgtgtctatctctctccaaattgcatac-tccaattattataccaaatgtagaggatc 17828532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 537 - 579
Target Start/End: Original strand, 9952993 - 9953035
Alignment:
Q  537 gggttaggatcctcttcatttgataaaataaatggaagtacac 579  Q
    |||||| |||||||| |||||||||||||||||||||||||||    
T  9952993 gggttaagatcctctccatttgataaaataaatggaagtacac 9953035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 660 - 702
Target Start/End: Complemental strand, 9953035 - 9952993
Alignment:
Q  660 gtgtacttccatttattttatcaaatgaagaggatcctaaccc 702  Q
    ||||||||||||||||||||||||||| |||||||| ||||||    
T  9953035 gtgtacttccatttattttatcaaatggagaggatcttaaccc 9952993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 535 - 611
Target Start/End: Complemental strand, 4804569 - 4804493
Alignment:
Q  535 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 611  Q
    |||||| | |||||||| ||||||  ||||||||||||  |  |||| ||||||||||||||||||| |||||||||    
T  4804569 aggggtgaagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacaaaaaatagat 4804493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 616 - 695
Target Start/End: Original strand, 7162117 - 7162196
Alignment:
Q  616 gtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||||  ||||||||  ||||||||||||||||||| |||   |  |||||||||||||||||||| ||| ||||    
T  7162117 gtaggacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatggagatgatc 7162196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 614 - 695
Target Start/End: Complemental strand, 227608 - 227526
Alignment:
Q  614 tggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||||||  ||||||| || |||||||||||||||||||| ||   |  ||||||||||||| |||||| ||||||||    
T  227608 tggtaggacccaccatctattcttttgtgtctatctctctccaaaatgcaaaactccatttattttagcaaatggagaggatc 227526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 614 - 652
Target Start/End: Complemental strand, 9954370 - 9954332
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctct 652  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  9954370 tggtgggacccactatctattttatgtgtctatctctct 9954332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 635 - 693
Target Start/End: Original strand, 23936305 - 23936365
Alignment:
Q  635 ttatgtgtctatctctctc--caaattgtgtacttccatttattttatcaaatgaagagga 693  Q
    |||||||||||||||||||  | |||||||||||| |||| | ||||||||||| ||||||    
T  23936305 ttatgtgtctatctctctctccgaattgtgtactttcattcaatttatcaaatggagagga 23936365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 546 - 604
Target Start/End: Complemental strand, 23936365 - 23936305
Alignment:
Q  546 tcctcttcatttgataaaataaatggaagtacacaatttg--gagagagatagacacataa 604  Q
    |||||| ||||||||||| | |||| |||||||||||| |  |||||||||||||||||||    
T  23936365 tcctctccatttgataaattgaatgaaagtacacaattcggagagagagatagacacataa 23936305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 2e-33; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 614 - 703
Target Start/End: Original strand, 39426241 - 39426330
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 703  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||    
T  39426241 tggtaggacccactatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatggagatgatactaacccc 39426330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 536 - 612
Target Start/End: Complemental strand, 39426330 - 39426254
Alignment:
Q  536 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39426330 ggggttagtatcatctccatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 39426254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 615 - 701
Target Start/End: Complemental strand, 35534825 - 35534741
Alignment:
Q  615 ggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 701  Q
    ||||||| ||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||| ||||||    
T  35534825 ggtaggatccactatctattttatgtgtctatctctct--aaattgtgtacttccatttattttatcaaatggagaggatactaacc 35534741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 611 - 704
Target Start/End: Complemental strand, 32887827 - 32887735
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccct 704  Q
    ||||||||||| ||| ||| |||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  32887827 taatggtaggatccactatttattttatgtgtctatctttctctaaactgtgtact-ccatttattttatcaaatgaagaggatcctaatccct 32887735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 538 - 612
Target Start/End: Original strand, 35534741 - 35534813
Alignment:
Q  538 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  35534741 ggttagtatcctctccatttgataaaataaatggaagtacacaattt--agagagatagacacataaaatagata 35534813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 535 - 608
Target Start/End: Original strand, 32887735 - 32887807
Alignment:
Q  535 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaata 608  Q
    |||| |||||||||||||||||||||||||||||||| |||||||| ||| |||| ||||||||||||||||||    
T  32887735 agggattaggatcctcttcatttgataaaataaatgg-agtacacagtttagagaaagatagacacataaaata 32887807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 617 - 699
Target Start/End: Complemental strand, 26860091 - 26860010
Alignment:
Q  617 taggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaa 699  Q
    ||||||| | |||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||  ||| ||||||||    
T  26860091 taggacctactatctattttatgtgtctatctctcttcaaattatgtac-tccatttattttatcaaatagagatgatcctaa 26860010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 540 - 612
Target Start/End: Original strand, 26860010 - 26860081
Alignment:
Q  540 ttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    |||||||| |||  ||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  26860010 ttaggatcatctctatttgataaaataaatgga-gtacataatttgaagagagatagacacataaaatagata 26860081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 611 - 695
Target Start/End: Original strand, 26372280 - 26372362
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||||| | ||| ||||||||| ||||||||||||||  ||||| | |||||||||||||||||||||||  ||||||||    
T  26372280 taatggtaggatctattgtctattttacgtgtctatctctct--aaattatctacttccatttattttatcaaattgagaggatc 26372362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 614 - 695
Target Start/End: Complemental strand, 50294107 - 50294026
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||||||||||||    
T  50294107 tggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaatctccatttattttgccaaatgaagaggatc 50294026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 544 - 610
Target Start/End: Complemental strand, 26372362 - 26372298
Alignment:
Q  544 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaataga 610  Q
    ||||||||  ||||||||||||||||||||||| | |||||  |||||||||||||| |||||||||    
T  26372362 gatcctctcaatttgataaaataaatggaagtagataattt--agagagatagacacgtaaaataga 26372298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 611 - 656
Target Start/End: Complemental strand, 7840726 - 7840681
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaa 656  Q
    |||||||||||||||| ||||||||  |||||||||||||||||||    
T  7840726 taatggtaggacccatcatctatttcttgtgtctatctctctccaa 7840681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 544 - 611
Target Start/End: Original strand, 50294026 - 50294093
Alignment:
Q  544 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 611  Q
    |||||||||||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  50294026 gatcctcttcatttggcaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagat 50294093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 614 - 660
Target Start/End: Complemental strand, 5047425 - 5047379
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattg 660  Q
    |||||||| |||||||||||||||||  || ||||||||||||||||    
T  5047425 tggtaggatccattatctattttatgcatcaatctctctccaaattg 5047379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 545 - 599
Target Start/End: Original strand, 49384627 - 49384680
Alignment:
Q  545 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagaca 599  Q
    ||||||| |||||| |||||||||||||| || ||||||| ||||||||||||||    
T  49384627 atcctctccatttgttaaaataaatggaa-tatacaatttagagagagatagaca 49384680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 640 - 694
Target Start/End: Complemental strand, 49384680 - 49384627
Alignment:
Q  640 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 694  Q
    |||||||||||||| ||||||| || |||||||||||||| |||||| |||||||    
T  49384680 tgtctatctctctctaaattgtata-ttccatttattttaacaaatggagaggat 49384627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 2e-27; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 614 - 701
Target Start/End: Original strand, 42761744 - 42761831
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 701  Q
    |||||||| ||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || |||||||||||||||||    
T  42761744 tggtaggatccactatctattttatgtgtctatctctcttcaaattgcgtacttccatttattttattaagtgaagaggatcctaacc 42761831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 538 - 612
Target Start/End: Complemental strand, 42761831 - 42761757
Alignment:
Q  538 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    ||||||||||||||||| || ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  42761831 ggttaggatcctcttcacttaataaaataaatggaagtacgcaatttgaagagagatagacacataaaatagata 42761757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 611 - 704
Target Start/End: Original strand, 21360304 - 21360400
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattgtgta----cttccatttattttatcaaatgaagaggatcctaacccct 704  Q
    |||||||| || | ||||||||| |||||||| |||||||||||||||| ||||    |||| ||||||||||||||||| |||||||||||||||||    
T  21360304 taatggtatgatctattatctatattatgtgtttatctctctccaaattatgtatgtacttc-atttattttatcaaatggagaggatcctaacccct 21360400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 535 - 614
Target Start/End: Complemental strand, 21360400 - 21360318
Alignment:
Q  535 aggggttaggatcctcttcatttgataaaataaatggaag----tacacaatttggagagagatagacacataaaatagataat 614  Q
    ||||||||||||||||| ||||||||||||||||| ||||    |||| |||||||||||||||| |||||||| |||||||||    
T  21360400 aggggttaggatcctctccatttgataaaataaat-gaagtacatacataatttggagagagataaacacataatatagataat 21360318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 611 - 678
Target Start/End: Original strand, 18689519 - 18689585
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 678  Q
    ||||||||||| ||| |||||||||||| ||| |||||||||||||||||  || |||||||||||||    
T  18689519 taatggtaggatccactatctattttatatgtttatctctctccaaattgcata-ttccatttatttt 18689585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 611 - 678
Target Start/End: Complemental strand, 24557228 - 24557162
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 678  Q
    |||||||||||||||||| ||||||||||| | ||||||| |||||||||  | ||||||||||||||    
T  24557228 taatggtaggacccattacctattttatgtctatatctctttccaaattgcat-cttccatttatttt 24557162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 542 - 612
Target Start/End: Original strand, 42338008 - 42338077
Alignment:
Q  542 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    ||||||||||||||||||||||||||||  ||||| | |||||||||||| ||| |||  |||||||||||    
T  42338008 aggatcctcttcatttgataaaataaat-taagtatataatttggagagatatatacatgtaaaatagata 42338077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 627 - 697
Target Start/End: Complemental strand, 42338077 - 42338008
Alignment:
Q  627 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 697  Q
    |||||||||||  ||| ||| |||||||||||| | |||||  ||||||||||||||||||||||||||||    
T  42338077 tatctattttacatgtatatatctctccaaattatatactta-atttattttatcaaatgaagaggatcct 42338008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 614 - 705
Target Start/End: Complemental strand, 37966487 - 37966397
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctc 705  Q
    |||||||||| |  ||||||||| ||||| ||||||||| |||||||   | |||||||||||||  |||||| |||||||| |||||||||    
T  37966487 tggtaggacctacaatctattttttgtgtttatctctcttcaaattgcaaa-ttccatttattttgccaaatggagaggatcttaacccctc 37966397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 640 - 706
Target Start/End: Original strand, 20169125 - 20169190
Alignment:
Q  640 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctct 706  Q
    |||||||||||||||||||||  | ||||||||||||||   ||||| |||||||| ||||||||||    
T  20169125 tgtctatctctctccaaattgcat-cttccatttatttttataaatggagaggatcttaacccctct 20169190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 533 - 599
Target Start/End: Complemental strand, 20169190 - 20169125
Alignment:
Q  533 agaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagaca 599  Q
    |||||||||| |||||||| |||||   |||||||||||||| |  |||||||||||||||||||||    
T  20169190 agaggggttaagatcctctccatttataaaaataaatggaag-atgcaatttggagagagatagaca 20169125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 614 - 656
Target Start/End: Complemental strand, 30426713 - 30426671
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaa 656  Q
    ||||||||||||  ||||||||| |||||||||||||||||||    
T  30426713 tggtaggacccaccatctattttttgtgtctatctctctccaa 30426671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 611 - 695
Target Start/End: Original strand, 6014222 - 6014307
Alignment:
Q  611 taatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||||||| || ||||||| || ||||||||||| |||||||||||   |  || |||||||||| |||||| ||||||||    
T  6014222 taatggtaggacctatcatctattcttttgtgtctatctttctccaaattgcaaaactctatttattttagcaaatggagaggatc 6014307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 627 - 660
Target Start/End: Original strand, 17520426 - 17520459
Alignment:
Q  627 tatctattttatgtgtctatctctctccaaattg 660  Q
    |||||||||||||||||||| |||||||||||||    
T  17520426 tatctattttatgtgtctatatctctccaaattg 17520459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 579 - 612
Target Start/End: Complemental strand, 17520459 - 17520426
Alignment:
Q  579 caatttggagagagatagacacataaaatagata 612  Q
    ||||||||||||| ||||||||||||||||||||    
T  17520459 caatttggagagatatagacacataaaatagata 17520426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 614 - 695
Target Start/End: Original strand, 28069750 - 28069831
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||||||  ||||||||| ||||||| ||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  28069750 tggtaggacccaccatctattttttgtgtctttctctctccaacttgcaaatctccatttattttgccaaatggagaggatc 28069831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 614 - 695
Target Start/End: Original strand, 36991387 - 36991468
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||||||| ||||||||  | ||||||||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  36991387 tggtaggacccatcatctatttcttatgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatc 36991468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 534 - 611
Target Start/End: Original strand, 37966397 - 37966473
Alignment:
Q  534 gaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 611  Q
    ||||||||| |||||||| ||||||  ||||||||||||| |   ||||||| ||||||||| ||||| |||||||||    
T  37966397 gaggggttaagatcctctccatttggcaaaataaatggaa-tttgcaatttgaagagagataaacacaaaaaatagat 37966473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 2e-27; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 614 - 701
Target Start/End: Original strand, 30709141 - 30709228
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 701  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | ||| ||||||||||||||    
T  30709141 tggtaggacccaatatctattttatgtgtctatctctctccaaattgtgtactttcattgattttataagatggagaggatcctaacc 30709228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 614 - 702
Target Start/End: Complemental strand, 4446940 - 4446852
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 702  Q
    |||||||| ||| |||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||| ||||||| |||||||    
T  4446940 tggtaggatccactatctattttatgtgtctatctctcttcaaattgtacacttccatttattttatcaaatggagaggatactaaccc 4446852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 537 - 612
Target Start/End: Original strand, 4446852 - 4446927
Alignment:
Q  537 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    ||||||| ||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  4446852 gggttagtatcctctccatttgataaaataaatggaagtgtacaatttgaagagagatagacacataaaatagata 4446927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 627 - 702
Target Start/End: Original strand, 30217517 - 30217592
Alignment:
Q  627 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 702  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||  |||||||||||||||    
T  30217517 tatctattttatgtgtctatctcactctaaattgtgtgcttccatttattttatcaaatagagaggatcctaaccc 30217592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 537 - 612
Target Start/End: Complemental strand, 30217592 - 30217517
Alignment:
Q  537 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    |||||||||||||||  ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||    
T  30217592 gggttaggatcctctctatttgataaaataaatggaagcacacaatttagagtgagatagacacataaaatagata 30217517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 538 - 612
Target Start/End: Complemental strand, 30709228 - 30709154
Alignment:
Q  538 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    |||||||||||||| ||| | ||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  30709228 ggttaggatcctctccatcttataaaatcaatgaaagtacacaatttggagagagatagacacataaaatagata 30709154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 616 - 704
Target Start/End: Original strand, 19908813 - 19908899
Alignment:
Q  616 gtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccct 704  Q
    ||||||| || ||||||||||||||||||||||| ||||||||||  ||| |||||||||| |||||||||||||||||| | ||||||    
T  19908813 gtaggactcactatctattttatgtgtctatctc-ctccaaattgcatac-tccatttattatatcaaatgaagaggatctttacccct 19908899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 536 - 606
Target Start/End: Original strand, 30721564 - 30721632
Alignment:
Q  536 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaa 606  Q
    ||||||| ||||| || ||||||||||||||||| |||||||||||||||  |||||||||||||||||||    
T  30721564 ggggttaagatccgctccatttgataaaataaatagaagtacacaatttg--gagagatagacacataaaa 30721632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 633 - 703
Target Start/End: Complemental strand, 30721632 - 30721564
Alignment:
Q  633 ttttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 703  Q
    |||||||||||||||||||  ||||||||||||||| ||||||||||||||||| || ||||| |||||||    
T  30721632 ttttatgtgtctatctctc--caaattgtgtacttctatttattttatcaaatggagcggatcttaacccc 30721564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 535 - 612
Target Start/End: Complemental strand, 19908899 - 19908824
Alignment:
Q  535 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    |||||| | |||||||||||||||||| ||||||||| ||||  |||||||||| |||||||||||||||||||||||    
T  19908899 aggggtaaagatcctcttcatttgatataataaatgg-agtatgcaatttggag-gagatagacacataaaatagata 19908824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 611 - 678
Target Start/End: Original strand, 36929744 - 36929810
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 678  Q
    |||||||||||| || || |||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  36929744 taatggtaggacacactacctattttatgtgtctatctctctccaaattgcatac-tccatttatttt 36929810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 628 - 702
Target Start/End: Original strand, 2063399 - 2063472
Alignment:
Q  628 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 702  Q
    ||||||||| |||||||||||||||||||||||   || || ||||||||| |||||||||||||||| ||||||    
T  2063399 atctattttttgtgtctatctctctccaaattgcaaac-tctatttattttgtcaaatgaagaggatcttaaccc 2063472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 537 - 611
Target Start/End: Complemental strand, 2063472 - 2063399
Alignment:
Q  537 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 611  Q
    |||||| |||||||||||||||| ||||||||| || ||   ||||||||||||||||||||||| |||||||||    
T  2063472 gggttaagatcctcttcatttgacaaaataaataga-gtttgcaatttggagagagatagacacaaaaaatagat 2063399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 611 - 699
Target Start/End: Complemental strand, 30857725 - 30857638
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaa 699  Q
    |||| |||||| |||||||||||||| |||||||| |||||| ||||||   ||| |||||||||||| | ||||| ||||||||||||    
T  30857725 taatagtaggatccattatctattttttgtgtctacctctcttcaaattacatac-tccatttattttgtgaaatggagaggatcctaa 30857638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 536 - 612
Target Start/End: Original strand, 31618724 - 31618798
Alignment:
Q  536 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    |||||||||||||||| |||||||| ||| |||||| |||| |||||||||||| ||||||| | ||||||||||||    
T  31618724 ggggttaggatcctctccatttgat-aaagaaatgg-agtatacaatttggagaaagatagatatataaaatagata 31618798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 627 - 703
Target Start/End: Complemental strand, 31618798 - 31618724
Alignment:
Q  627 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 703  Q
    |||||||||||| | ||||||| |||||||||||| |||| |||||| ||| |||||||| ||||||||||||||||    
T  31618798 tatctattttatatatctatctttctccaaattgtatact-ccatttcttt-atcaaatggagaggatcctaacccc 31618724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 611 - 678
Target Start/End: Original strand, 15709796 - 15709862
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 678  Q
    ||||||||||| ||| |||||||||||| ||| |||||||||||||||||  || |||||||||||||    
T  15709796 taatggtaggatccactatctattttatatgtttatctctctccaaattgcata-ttccatttatttt 15709862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 544 - 610
Target Start/End: Original strand, 22061433 - 22061498
Alignment:
Q  544 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaataga 610  Q
    ||||||||  |||||| |||||||||| |||||  ||||||| ||||||||||||||||||||||||    
T  22061433 gatcctctcaatttgacaaaataaatg-aagtatgcaatttgaagagagatagacacataaaataga 22061498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 629 - 695
Target Start/End: Complemental strand, 22061498 - 22061433
Alignment:
Q  629 tctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    |||||||||||||||||||||||| |||||||  ||||| |||||||||| ||||||  ||||||||    
T  22061498 tctattttatgtgtctatctctcttcaaattgcatactt-catttattttgtcaaattgagaggatc 22061433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 614 - 695
Target Start/End: Original strand, 13238712 - 13238793
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  13238712 tggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaatctccatttattttgccaaatggagaggatc 13238793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 579 - 616
Target Start/End: Original strand, 35315286 - 35315323
Alignment:
Q  579 caatttggagagagatagacacataaaatagataatgg 616  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  35315286 caatttgaagagagatagacacataaaatagataatgg 35315323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 623 - 660
Target Start/End: Complemental strand, 35315323 - 35315286
Alignment:
Q  623 ccattatctattttatgtgtctatctctctccaaattg 660  Q
    |||||||||||||||||||||||||||||| |||||||    
T  35315323 ccattatctattttatgtgtctatctctcttcaaattg 35315286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 540 - 616
Target Start/End: Original strand, 30857638 - 30857713
Alignment:
Q  540 ttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgg 616  Q
    |||||||||||| ||||| | |||||||||||| |||   |||||| |||||| |||||||| ||||||||||||||    
T  30857638 ttaggatcctctccatttcacaaaataaatgga-gtatgtaatttgaagagaggtagacacaaaaaatagataatgg 30857713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 621 - 661
Target Start/End: Complemental strand, 34512062 - 34512022
Alignment:
Q  621 acccattatctattttatgtgtctatctctctccaaattgt 661  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  34512062 acccactatctattttatgtgtctatctttctccaaattgt 34512022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 561 - 609
Target Start/End: Complemental strand, 36929810 - 36929763
Alignment:
Q  561 aaaataaatggaagtacacaatttggagagagatagacacataaaatag 609  Q
    |||||||||||| |||  |||||||||||||||||||||||||||||||    
T  36929810 aaaataaatgga-gtatgcaatttggagagagatagacacataaaatag 36929763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 578 - 612
Target Start/End: Original strand, 34512022 - 34512056
Alignment:
Q  578 acaatttggagagagatagacacataaaatagata 612  Q
    |||||||||||| ||||||||||||||||||||||    
T  34512022 acaatttggagaaagatagacacataaaatagata 34512056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 652 - 701
Target Start/End: Original strand, 6946335 - 6946384
Alignment:
Q  652 tccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 701  Q
    ||||||||||| | || ||||||||||||||||||  |||||||||||||    
T  6946335 tccaaattgtgcattttcatttattttatcaaatggggaggatcctaacc 6946384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 538 - 587
Target Start/End: Complemental strand, 6946384 - 6946335
Alignment:
Q  538 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttgga 587  Q
    |||||||||||||  |||||||||||||||||| || | |||||||||||    
T  6946384 ggttaggatcctccccatttgataaaataaatgaaaatgcacaatttgga 6946335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 614 - 695
Target Start/End: Original strand, 35316856 - 35316937
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    |||||||| |||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  35316856 tggtaggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatc 35316937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 611 - 660
Target Start/End: Original strand, 38397109 - 38397158
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattg 660  Q
    |||| |||| ||||| |||||||||||| ||||||||||||| |||||||    
T  38397109 taatagtagcacccactatctattttatttgtctatctctcttcaaattg 38397158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 2e-21; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 613 - 702
Target Start/End: Original strand, 47270580 - 47270668
Alignment:
Q  613 atggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 702  Q
    |||||||| || ||||||||||| |||||||||||| |||| |||||||||| ||||||||||||||||||||  |||||||||||||||    
T  47270580 atggtagggcctattatctattt-atgtgtctatctatctctaaattgtgtaattccatttattttatcaaatagagaggatcctaaccc 47270668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 537 - 614
Target Start/End: Complemental strand, 47270668 - 47270592
Alignment:
Q  537 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataat 614  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||| |||| |||||||||||| |||||||||||    
T  47270668 gggttaggatcctctctatttgataaaataaatggaattacacaatttagagatagatagacacat-aaatagataat 47270592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 614 - 664
Target Start/End: Original strand, 29844322 - 29844372
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgta 664  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  29844322 tggtagaacccactatctattttatgtgtctatctctctccaaattgtgta 29844372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 614 - 695
Target Start/End: Original strand, 4888498 - 4888579
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    |||||||||||| |||||||||| ||||||||||||||||||| |||   |  |||||||||||| ||||||| ||||||||    
T  4888498 tggtaggacccactatctattttttgtgtctatctctctccaacttgcaaatctccatttattttgtcaaatggagaggatc 4888579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 575 - 612
Target Start/End: Complemental strand, 29844372 - 29844335
Alignment:
Q  575 tacacaatttggagagagatagacacataaaatagata 612  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29844372 tacacaatttggagagagatagacacataaaatagata 29844335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 614 - 694
Target Start/End: Original strand, 989160 - 989239
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 694  Q
    |||||||||||| ||| |||||| |||||||||||||||||||||||   || |||||||| ||| ||||||| |||||||    
T  989160 tggtaggacccactatatattttttgtgtctatctctctccaaattgcaaac-tccatttaatttgtcaaatggagaggat 989239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 611 - 656
Target Start/End: Original strand, 12139355 - 12139400
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaa 656  Q
    |||||||||||||||  ||||||||| |||||||||||||||||||    
T  12139355 taatggtaggacccaccatctattttttgtgtctatctctctccaa 12139400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 611 - 660
Target Start/End: Original strand, 32915984 - 32916033
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattg 660  Q
    ||||||||||||||| ||| |||||| ||||||||||||||| |||||||    
T  32915984 taatggtaggacccactatttattttttgtgtctatctctcttcaaattg 32916033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 611 - 700
Target Start/End: Complemental strand, 40023303 - 40023215
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaac 700  Q
    |||||||| || |||||| ||||||||| ||||||||| |||||||||||| ||| ||  |||||||| ||||||  ||||||| |||||    
T  40023303 taatggtaagatccattaactattttatatgtctatctttctccaaattgtatac-tcgttttattttttcaaatagagaggattctaac 40023215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 544 - 612
Target Start/End: Complemental strand, 4888579 - 4888511
Alignment:
Q  544 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    |||||||| ||||||| ||||||||||||  |   ||| ||||||||||||||||||| ||||||||||    
T  4888579 gatcctctccatttgacaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagata 4888511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 544 - 612
Target Start/End: Original strand, 5463867 - 5463934
Alignment:
Q  544 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    |||||||| ||||||||| |||||||  | ||| |||||||||||||| ||| ||||||||||||||||    
T  5463867 gatcctctccatttgatataataaatata-gtatacaatttggagagatataaacacataaaatagata 5463934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 627 - 695
Target Start/End: Complemental strand, 5463934 - 5463867
Alignment:
Q  627 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    |||||||||||||||| ||| |||||||||||||| ||| |  ||||||| ||||||||| ||||||||    
T  5463934 tatctattttatgtgtttatatctctccaaattgtatac-tatatttattatatcaaatggagaggatc 5463867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 611 - 695
Target Start/End: Complemental strand, 7712414 - 7712331
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    |||||||||||| || ||||||| |||||| |||||||||||| ||||||  | ||||||||||||||   ||||| ||||||||    
T  7712414 taatggtaggactcactatctatcttatgtctctatctctctctaaattgcat-cttccatttatttttataaatggagaggatc 7712331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 614 - 702
Target Start/End: Complemental strand, 39855857 - 39855770
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 702  Q
    |||||||||| |  |||| |||||||||||||||||||||||||||    || |||||||| ||| |||||||||||| ||| ||||||    
T  39855857 tggtaggaccgaccatcttttttatgtgtctatctctctccaaattacaaac-tccatttaatttgtcaaatgaagagaatcttaaccc 39855770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 611 - 658
Target Start/End: Original strand, 24193621 - 24193668
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaat 658  Q
    |||||||| ||| |||| |||||||||||||||||||||||| |||||    
T  24193621 taatggtaagactcattgtctattttatgtgtctatctctcttcaaat 24193668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 628 - 695
Target Start/End: Original strand, 44648009 - 44648076
Alignment:
Q  628 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||| ||||||||||||||||||| |||   |  |||||||||||| ||||||| ||||||||    
T  44648009 atctattttttgtgtctatctctctccaacttgcaaaactccatttattttgtcaaatggagaggatc 44648076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 544 - 611
Target Start/End: Complemental strand, 44648076 - 44648009
Alignment:
Q  544 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 611  Q
    |||||||| ||||||| ||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  44648076 gatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 44648009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 614 - 656
Target Start/End: Complemental strand, 25084772 - 25084730
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaa 656  Q
    ||||||||||||  ||||||||| |||||||||||||||||||    
T  25084772 tggtaggacccaccatctattttttgtgtctatctctctccaa 25084730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 614 - 703
Target Start/End: Original strand, 33450537 - 33450627
Alignment:
Q  614 tggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 703  Q
    |||| |||||||  ||||||| || |||||||||||||||||||||||   |  || |||||||||| |||||| |||||||| |||||||    
T  33450537 tggttggacccaccatctattcttttgtgtctatctctctccaaattgcaaaactcaatttattttagcaaatggagaggatcttaacccc 33450627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 640 - 706
Target Start/End: Original strand, 44390835 - 44390900
Alignment:
Q  640 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctct 706  Q
    |||||||||||||||||||||  | ||||||||||||||   ||||| |||||||| ||||||||||    
T  44390835 tgtctatctctctccaaattgcat-cttccatttatttttataaatggagaggatcttaacccctct 44390900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 533 - 599
Target Start/End: Complemental strand, 44390900 - 44390835
Alignment:
Q  533 agaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagaca 599  Q
    |||||||||| |||||||| |||||   |||||||||||||| |  |||||||||||||||||||||    
T  44390900 agaggggttaagatcctctccatttataaaaataaatggaag-atgcaatttggagagagatagaca 44390835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 614 - 691
Target Start/End: Original strand, 7362599 - 7362676
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagag 691  Q
    ||||| ||||||  ||||||||| ||||||||||||||||||| |||   |  |||||||||||| ||||||| ||||    
T  7362599 tggtacgacccaccatctattttttgtgtctatctctctccaatttgcaaaactccatttattttgtcaaatggagag 7362676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 614 - 695
Target Start/End: Complemental strand, 9559098 - 9559017
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||||||  ||||||||| ||| ||||||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  9559098 tggtaggacccaccatctattttttgtatctatctctctccaacttgcaaatctccatttattttgccaaatggagaggatc 9559017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 616 - 673
Target Start/End: Original strand, 18064588 - 18064643
Alignment:
Q  616 gtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccattt 673  Q
    ||||||| || | |||||||||||||||||||||||||| ||||||||| ||||||||    
T  18064588 gtaggactcactgtctattttatgtgtctatctctctcc-aattgtgta-ttccattt 18064643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 536 - 601
Target Start/End: Complemental strand, 33450627 - 33450562
Alignment:
Q  536 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacaca 601  Q
    ||||||| |||||||| |||||| |||||||||| ||  |   |||||||||||||||||||||||    
T  33450627 ggggttaagatcctctccatttgctaaaataaattgagttttgcaatttggagagagatagacaca 33450562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 539 - 616
Target Start/End: Original strand, 40023215 - 40023291
Alignment:
Q  539 gttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgg 616  Q
    ||||| |||||||  |||||| ||||||||  || ||| |||||||||||| ||||||||| ||||||||| ||||||    
T  40023215 gttagaatcctctctatttgaaaaaataaaacga-gtatacaatttggagaaagatagacatataaaatagttaatgg 40023291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 8e-18; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 536 - 607
Target Start/End: Original strand, 15178628 - 15178699
Alignment:
Q  536 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaat 607  Q
    ||||||||||| |||| ||||||||||||| |||||||||||| |||||| ||||||||| |||||||||||    
T  15178628 ggggttaggattctctccatttgataaaatgaatggaagtacataatttgaagagagataaacacataaaat 15178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 632 - 703
Target Start/End: Complemental strand, 15178699 - 15178628
Alignment:
Q  632 attttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 703  Q
    ||||||||||| ||||||||| |||||| |||||||||||| ||||||||||||| |||| |||||||||||    
T  15178699 attttatgtgtttatctctcttcaaattatgtacttccattcattttatcaaatggagagaatcctaacccc 15178628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 612 - 700
Target Start/End: Original strand, 36532654 - 36532741
Alignment:
Q  612 aatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaac 700  Q
    |||| ||||| ||| ||| ||||||||||||||||||||||| |||||||| || |||||||||||||||| ||| |||||||| ||||    
T  36532654 aatgataggatccactatttattttatgtgtctatctctctctaaattgtgaac-tccatttattttatcagatggagaggatcttaac 36532741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 614 - 694
Target Start/End: Complemental strand, 5815344 - 5815267
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 694  Q
    ||||| |||||||||| ||||||  ||||||||||||||| ||||| |||||| ||||||||||||||||||| |||||||    
T  5815344 tggtatgacccattatatatttt--gtgtctatctctctcaaaattttgtact-ccatttattttatcaaatggagaggat 5815267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 539 - 608
Target Start/End: Complemental strand, 36532741 - 36532673
Alignment:
Q  539 gttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaata 608  Q
    |||| |||||||| ||| |||||||||||||||| || |||||||| |||||||||||||||||||||||    
T  36532741 gttaagatcctctccatctgataaaataaatgga-gttcacaatttagagagagatagacacataaaata 36532673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 614 - 695
Target Start/End: Complemental strand, 19901962 - 19901881
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||| |||||| ||||||||    
T  19901962 tggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatggagaggatc 19901881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 614 - 695
Target Start/End: Original strand, 23610673 - 23610754
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||| ||||||  ||||||||| ||||||||||||||||||| |||   |  |||||||||||||||||||| ||||||||    
T  23610673 tggtatgacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatggagaggatc 23610754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 542 - 607
Target Start/End: Original strand, 33841766 - 33841830
Alignment:
Q  542 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaat 607  Q
    |||||||||| |||||| |||| |||||||| ||| |||||||||||||||||||||||| |||||    
T  33841766 aggatcctctccatttgttaaagtaaatgga-gtatacaatttggagagagatagacacaaaaaat 33841830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 632 - 697
Target Start/End: Complemental strand, 33841830 - 33841766
Alignment:
Q  632 attttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 697  Q
    ||||| |||||||||||||||||||||||| ||| |||||||| |||| |||||| ||||||||||    
T  33841830 attttttgtgtctatctctctccaaattgtatac-tccatttactttaacaaatggagaggatcct 33841766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 545 - 601
Target Start/End: Original strand, 5815267 - 5815322
Alignment:
Q  545 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacaca 601  Q
    ||||||| ||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  5815267 atcctctccatttgataaaataaatgg-agtacaaaattttgagagagatagacaca 5815322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 616 - 699
Target Start/End: Original strand, 1871310 - 1871392
Alignment:
Q  616 gtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaa 699  Q
    |||||| ||| ||||||| || | |||||||||||||||||||||  ||| |||||||||||| ||||||  ||||||||||||    
T  1871310 gtaggatccactatctatattttttgtctatctctctccaaattgcatac-tccatttattttgtcaaattgagaggatcctaa 1871392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 544 - 611
Target Start/End: Complemental strand, 23610754 - 23610687
Alignment:
Q  544 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 611  Q
    |||||||| ||||||||||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  23610754 gatcctctccatttgataaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 23610687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 611 - 698
Target Start/End: Complemental strand, 42844234 - 42844148
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatccta 698  Q
    |||| ||||||| || | |||||||||||||||||||| |||||||||||| ||  || ||||||||||| | ||| |||||||||||    
T  42844234 taatagtaggacacactctctattttatgtgtctatctatctccaaattgt-taactctatttattttataatatggagaggatccta 42844148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 614 - 695
Target Start/End: Complemental strand, 5416509 - 5416429
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  |||||||||||| ||||||| ||||||||    
T  5416509 tggtaggacccacaatctatttt-tgtgtctatctctctccaacttgcaaaactccatttattttgtcaaatggagaggatc 5416429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 541 - 610
Target Start/End: Original strand, 42844148 - 42844216
Alignment:
Q  541 taggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaataga 610  Q
    ||||||||||| ||| | ||||||||||| ||  || |||||||||||| ||||||||||||||||||||    
T  42844148 taggatcctctccatattataaaataaatagagtta-acaatttggagatagatagacacataaaataga 42844216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 540 - 612
Target Start/End: Complemental strand, 1871392 - 1871321
Alignment:
Q  540 ttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    ||||||||||||  |||||| |||||||||||| |||  ||||||||||||||||||||| | || |||||||    
T  1871392 ttaggatcctctcaatttgacaaaataaatgga-gtatgcaatttggagagagatagacaaaaaatatagata 1871321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 616 - 660
Target Start/End: Original strand, 23474144 - 23474188
Alignment:
Q  616 gtaggacccattatctattttatgtgtctatctctctccaaattg 660  Q
    ||||||||||  |||||||||||||||||||||||| ||||||||    
T  23474144 gtaggacccaccatctattttatgtgtctatctctccccaaattg 23474188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 611 - 702
Target Start/End: Complemental strand, 56453867 - 56453777
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattt-tatcaaatgaagaggatcctaaccc 702  Q
    ||||| |||||||||  | ||||||| |||||||||||||||||||||||  | ||||||||||||| ||| ||||| |||||||| ||||||    
T  56453867 taatgataggacccaccacctattttttgtgtctatctctctccaaattgcat-cttccatttatttctat-aaatggagaggatcttaaccc 56453777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 544 - 611
Target Start/End: Original strand, 19901881 - 19901948
Alignment:
Q  544 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 611  Q
    |||||||| |||||| |||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  19901881 gatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 19901948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 628 - 695
Target Start/End: Original strand, 39862562 - 39862629
Alignment:
Q  628 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||| |||||||||||||||| || |||   | ||| ||||||||||||||||| ||||||||    
T  39862562 atctattttttgtgtctatctctctcaaacttgcaaaattctatttattttatcaaatggagaggatc 39862629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 544 - 611
Target Start/End: Complemental strand, 39862629 - 39862562
Alignment:
Q  544 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 611  Q
    |||||||| ||||||||||||||||| ||| |   ||| || |||||||||||||||| |||||||||    
T  39862629 gatcctctccatttgataaaataaatagaattttgcaagtttgagagagatagacacaaaaaatagat 39862562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 617 - 704
Target Start/End: Original strand, 56558313 - 56558400
Alignment:
Q  617 taggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccct 704  Q
    |||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| |||||||| | ||||||    
T  56558313 taggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcacccct 56558400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 614 - 695
Target Start/End: Complemental strand, 3952214 - 3952133
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||||||  ||||||||| | ||||||||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  3952214 tggtaggacccaccatctattttttttgtctatctctctccaacttgccaaactccatttattttgccaaatggagaggatc 3952133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 624 - 661
Target Start/End: Original strand, 5817976 - 5818013
Alignment:
Q  624 cattatctattttatgtgtctatctctctccaaattgt 661  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  5817976 cattatctcttttttgtgtctatctctctccaaattgt 5818013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 578 - 615
Target Start/End: Complemental strand, 5818013 - 5817976
Alignment:
Q  578 acaatttggagagagatagacacataaaatagataatg 615  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  5818013 acaatttggagagagatagacacaaaaaagagataatg 5817976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 537 - 609
Target Start/End: Original strand, 56453777 - 56453848
Alignment:
Q  537 gggttaggatcctcttcatttgata-aaataaatggaagtacacaatttggagagagatagacacataaaatag 609  Q
    |||||| |||||||| ||||| ||| ||||||||||||| |  ||||||||||||||||||||||| |||||||    
T  56453777 gggttaagatcctctccattt-atagaaataaatggaag-atgcaatttggagagagatagacacaaaaaatag 56453848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 5e-16; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 611 - 695
Target Start/End: Original strand, 29341023 - 29341106
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    |||| |||||||||| |||||||||| |||||||||||||||||||||||  ||| |||||||||| || |||||| ||||||||    
T  29341023 taatagtaggacccactatctattttctgtgtctatctctctccaaattgcatac-tccatttattataccaaatggagaggatc 29341106  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 544 - 612
Target Start/End: Complemental strand, 29341106 - 29341039
Alignment:
Q  544 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    |||||||| |||||| || |||||||||| |||  ||||||||||||||||||||||| ||||||||||    
T  29341106 gatcctctccatttggtataataaatgga-gtatgcaatttggagagagatagacacagaaaatagata 29341039  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 611 - 695
Target Start/End: Original strand, 43309136 - 43309220
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    |||||||| || ||| |||||||||| | ||||||||||||||||| |||   |  ||||||||||||||||||| |||||||||    
T  43309136 taatggtaagatccactatctattttttatgtctatctctctccaacttgcaaaactccatttattttatcaaataaagaggatc 43309220  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 542 - 608
Target Start/End: Original strand, 9460597 - 9460662
Alignment:
Q  542 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaata 608  Q
    |||||||||| |||||| |||||||||| || |||  ||||||||||||||||||||||||| ||||    
T  9460597 aggatcctctccatttggtaaaataaataga-gtatgcaatttggagagagatagacacatataata 9460662  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 631 - 697
Target Start/End: Complemental strand, 9460662 - 9460597
Alignment:
Q  631 tattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 697  Q
    |||| |||||||||||||||||||||||||  ||| || |||||||||| |||||| ||||||||||    
T  9460662 tattatatgtgtctatctctctccaaattgcatac-tctatttattttaccaaatggagaggatcct 9460597  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 614 - 695
Target Start/End: Original strand, 11775824 - 11775905
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    |||||||| |||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||| |||||| ||||||||    
T  11775824 tggtaggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatggagaggatc 11775905  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 614 - 695
Target Start/End: Complemental strand, 35660653 - 35660572
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  35660653 tggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatc 35660572  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 614 - 694
Target Start/End: Complemental strand, 4895779 - 4895699
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 694  Q
    ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  ||||| ||||||||    
T  4895779 tggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaataaagaggat 4895699  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 544 - 612
Target Start/End: Complemental strand, 43309220 - 43309152
Alignment:
Q  544 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 612  Q
    ||||||||| |||||||||||||||||||  |   ||| ||||||||||||||||| | ||||||||||    
T  43309220 gatcctctttatttgataaaataaatggagttttgcaagttggagagagatagacataaaaaatagata 43309152  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 544 - 611
Target Start/End: Complemental strand, 11775905 - 11775838
Alignment:
Q  544 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 611  Q
    |||||||| |||||| |||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  11775905 gatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 11775838  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 614 - 693
Target Start/End: Original strand, 39902446 - 39902525
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagagga 693  Q
    ||||||||||||  ||||||||  ||||| ||||||||||||| ||||  |  |||||||||||| ||||||| ||||||    
T  39902446 tggtaggacccaccatctatttcttgtgtttatctctctccaacttgtaaaactccatttattttgtcaaatggagagga 39902525  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 702
Target Start/End: Original strand, 21213953 - 21213987
Alignment:
Q  668 ccatttattttatcaaatgaagaggatcctaaccc 702  Q
    ||||||||||||||||||| |||||||||||||||    
T  21213953 ccatttattttatcaaatggagaggatcctaaccc 21213987  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 537 - 571
Target Start/End: Complemental strand, 21213987 - 21213953
Alignment:
Q  537 gggttaggatcctcttcatttgataaaataaatgg 571  Q
    ||||||||||||||| |||||||||||||||||||    
T  21213987 gggttaggatcctctccatttgataaaataaatgg 21213953  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 614 - 695
Target Start/End: Complemental strand, 18625465 - 18625384
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||||||  ||||||||| ||||||| ||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  18625465 tggtaggacccaccatctattttttgtgtctttctctctccaacttgcaaatctccatttattttgccaaatggagaggatc 18625384  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 611 - 660
Target Start/End: Original strand, 18653389 - 18653438
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattg 660  Q
    ||||||||| || || |||||||||| ||||||||||||||| |||||||    
T  18653389 taatggtagaactcactatctattttttgtgtctatctctcttcaaattg 18653438  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 627 - 660
Target Start/End: Original strand, 31653079 - 31653112
Alignment:
Q  627 tatctattttatgtgtctatctctctccaaattg 660  Q
    |||||||||||||||| |||||||||||||||||    
T  31653079 tatctattttatgtgtttatctctctccaaattg 31653112  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 579 - 612
Target Start/End: Complemental strand, 31653112 - 31653079
Alignment:
Q  579 caatttggagagagatagacacataaaatagata 612  Q
    ||||||||||||||||| ||||||||||||||||    
T  31653112 caatttggagagagataaacacataaaatagata 31653079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 614 - 695
Target Start/End: Complemental strand, 32129661 - 32129580
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||||||  |||||||||  |||||||||||||||||| || |  |  ||||||||||||  |||||| ||||||||    
T  32129661 tggtaggacccaccatctatttttggtgtctatctctctccaacttataaaactccatttattttgccaaatggagaggatc 32129580  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 614 - 695
Target Start/End: Original strand, 37266762 - 37266843
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||| ||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  37266762 tggtatgacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatc 37266843  T

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Target: scaffold0062 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 611 - 678
Target Start/End: Original strand, 58708 - 58774
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 678  Q
    ||||||||||| ||| |||||||||||| ||| |||||||||||||||||  || |||||||||||||    
T  58708 taatggtaggatccactatctattttatatgtttatctctctccaaattgcata-ttccatttatttt 58774  T

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Target: scaffold0250 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 611 - 656
Target Start/End: Original strand, 7175 - 7220
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaa 656  Q
    |||| ||||||||||  ||||||||| |||||||||||||||||||    
T  7175 taatagtaggacccaccatctattttttgtgtctatctctctccaa 7220  T

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Target: scaffold0121 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 611 - 660
Target Start/End: Complemental strand, 29616 - 29567
Alignment:
Q  611 taatggtaggacccattatctattttatgtgtctatctctctccaaattg 660  Q
    ||||| ||||||| |||| ||||||||||| |||||||||||| ||||||    
T  29616 taatgctaggacctattacctattttatgtctctatctctctctaaattg 29567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 614 - 695
Target Start/End: Original strand, 208094 - 208175
Alignment:
Q  614 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 695  Q
    ||||||||||||  ||||||||| ||||| ||||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  208094 tggtaggacccaccatctattttttgtgtttatctctctccaacttgcaaaactccatttattttgccaaatggagaggatc 208175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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