View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11487_low_3 (Length: 599)
Name: NF11487_low_3
Description: NF11487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11487_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Original strand, 42671666 - 42672256
Alignment:
| Q |
1 |
attaatttgtatttgtaaaactgtatgaagatgtttgtaacaaatagttgttaatcctttctggtataatctattttgatttgttattcccaccaaaaat |
100 |
Q |
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| T |
42671666 |
attaatttgtatttgtaaaactgtatgaagatgtttgtaacaaatagttgttaatcctttctggtataatctattttgatttgttattcccaccaaaaat |
42671765 |
T |
|
| Q |
101 |
agt---------cgtcaatgcatgttgcaaaaatctcgtcgtcaacatatgtaacatattccttaacgaaaaacatatgtaacatattggttattttttc |
191 |
Q |
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| T |
42671766 |
agttaaaagaatcgtcaatgcatgttacaaaaatctcgtcgtcaacatatgtaacatattccttaacgaaaaacatatgtaacatattggttattttttc |
42671865 |
T |
|
| Q |
192 |
ttacaaagattaataattgtaaacattaaccactttctctatggcttcaaatggagaagaagaatcctccaccgtgatcgccattgattcagacaagaac |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42671866 |
ttacaaagattaataattgtaaacattaaccactttctctatggcttcaaatggagaagaagaatcctccaccgtgatcgccattgattcagacaagaac |
42671965 |
T |
|
| Q |
292 |
agccaacacgctgtaaagtgggccgttgatcaccttttggacaagtacgcgtcatgcaccctcattcacgttagaaccaagcccttcaattcaagtaatt |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42671966 |
agccaacacgctgtaaagtgggccgttgatcaccttttggacaaatacgcgtcatgcaccctcattcacgttagaaccaagcccttcaattcaagtaatt |
42672065 |
T |
|
| Q |
392 |
acccttttccatcaacacaaattggttaattaattgcatgcttccataattattcataattattggcttttcttgtttatgcagatgaatttgatgctat |
491 |
Q |
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| T |
42672066 |
acccttttccatcaacacaaattggttaattaattgcatgcttccataattattcataattattggtttttcttgtttatgcagatgaatttgatgctat |
42672165 |
T |
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| Q |
492 |
ccctaaacaaggtcgtccacctaccgaagaagaattgcatcagttctttctccccttccgaggattttgtgctcgaaaaggggtaagtaat |
582 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42672166 |
ccctaaacaaggtcgtccacctaccgaagaagaattgcatcagttctttctccccttccgaggattttgtgctcgaaaaggggtcagtaat |
42672256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 493 - 578
Target Start/End: Original strand, 6512953 - 6513038
Alignment:
| Q |
493 |
cctaaacaaggtcgtccacctaccgaagaagaattgcatcagttctttctccccttccgaggattttgtgctcgaaaaggggtaag |
578 |
Q |
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| T |
6512953 |
cctaaacatggtcgtccaccaactcatgaagaattgcaccaattttttcttcccttccgtggattttgtgctagaaaaggggtaag |
6513038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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