View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11488_high_5 (Length: 253)
Name: NF11488_high_5
Description: NF11488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11488_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 12691443 - 12691213
Alignment:
| Q |
1 |
agaaaaaagtttaatttttgataacttgtatagttggtgaagactagagccttgttaggaaaatgacaaaacatttatgttgaaacgagatatcaatatg |
100 |
Q |
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| T |
12691443 |
agaaaaaagtttaatttttgataacttgtatagttggtgaagactagagccttgttaggaaaatgacaaaacatttatgttgaaacgagatatcaatatg |
12691344 |
T |
|
| Q |
101 |
acaatatctcttatttggatgtttttctannnnnnnctgttcttgttttacttaataataatgaaaataaaaaagatcccaatatcatgcatgcacacat |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12691343 |
acaatatctcttatttggatgtttttctatttttttctgttcttgttttacttaataataatgaaaataaaaatgatcccaatatcatgcatgcacacat |
12691244 |
T |
|
| Q |
201 |
aaaatcacaatgatcagtagagaattccttc |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
12691243 |
aaaatcacaatgatcagtagagaattccttc |
12691213 |
T |
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