View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11488_low_1 (Length: 589)
Name: NF11488_low_1
Description: NF11488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11488_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 17 - 582
Target Start/End: Original strand, 28332805 - 28333370
Alignment:
| Q |
17 |
ataaggaagaagatgtgagtgcagttacttgatatgcaagtaactgtgtttagttcagttagtcagattacttgatttgcaagtaactatgagattactt |
116 |
Q |
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| T |
28332805 |
ataaggaagaagatatgagtgcagttacttgatatgcaagtaactgtgtttagttcagttaatcagattacttgatttgcaagtaactatgagattactt |
28332904 |
T |
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| Q |
117 |
gattagcttgttgattaggagaagtgtaacactatatatacttcttgtacatgttgattcaactatgagaaatgagaatgattcgttttgcacatttcat |
216 |
Q |
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| T |
28332905 |
gattagcttgttgattaggagaagtgtaacactatatatacttcttgtacatgttgattcaactatgagaaatgagaattattcgttttgcacatttcat |
28333004 |
T |
|
| Q |
217 |
aacataattgtcatagacagatctgaaatttctttgggagagaagaagtcataactagttcttaacttgtcgtgcttcctcgcattgaaggaataatgan |
316 |
Q |
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| T |
28333005 |
aacataattgtcatagacagatctgaaatttctttgggagagaagaagtcataactagttcttaacttgtcgtgcttcctcgcattgaaggtataatgat |
28333104 |
T |
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| Q |
317 |
nnnnnnattgaagctgagagttattgcgtaaacttgaatccagtatttctgaaacgtttcctatgtctaatgactaatacaagacattactagccccgat |
416 |
Q |
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| T |
28333105 |
ttttttattgaagctgagagttattgagtaaacttgaatccagtatttttgaaacgtttcctatgtctaatgactaatacaagacattactagccccgat |
28333204 |
T |
|
| Q |
417 |
agttcagtatgtatctacctacttttcagctaggaatttttgctttgcgaggggcgtcattaggtcagaagcttcatatagatggtaatgcaaggtggtt |
516 |
Q |
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| T |
28333205 |
agttcagtatgtatctacctacttttcagctaggaatttttgctttgcgagggtcgtcattaggtcagaagcttcatatagatggtaatgcaaggtggtt |
28333304 |
T |
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| Q |
517 |
tgaagacagatnnnnnnncagctgaatctgaattgtaacttatgagatagtgctgattcccctatg |
582 |
Q |
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| T |
28333305 |
tgaagacagataaaaaaacagctgaatctgaattgtaacttatgagatagtgctgattcccctatg |
28333370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 25191255 - 25191211
Alignment:
| Q |
149 |
tatatatacttcttgtacatgttgattcaactatgagaaatgaga |
193 |
Q |
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| T |
25191255 |
tatatatactacttgtacatgttgaatcatctatgagaaatgaga |
25191211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 527
Target Start/End: Original strand, 1063694 - 1063740
Alignment:
| Q |
481 |
tcagaagcttcatatagatggtaatgcaaggtggtttgaagacagat |
527 |
Q |
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| T |
1063694 |
tcagaagcttcatgtagatggtaatggaatgtggtttgaaggcagat |
1063740 |
T |
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