View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11489_low_1 (Length: 532)

Name: NF11489_low_1
Description: NF11489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11489_low_1
NF11489_low_1
[»] chr3 (43 HSPs)
chr3 (17-371)||(23467507-23467864)
chr3 (17-210)||(23400943-23401136)
chr3 (252-435)||(40845866-40846049)
chr3 (253-435)||(21853194-21853376)
chr3 (252-434)||(44994918-44995101)
chr3 (253-435)||(13856096-13856278)
chr3 (252-434)||(8950454-8950636)
chr3 (252-435)||(5391453-5391636)
chr3 (252-408)||(32352843-32352999)
chr3 (253-422)||(1781757-1781928)
chr3 (435-525)||(8265526-8265616)
chr3 (253-383)||(43347337-43347468)
chr3 (253-417)||(20382514-20382679)
chr3 (253-435)||(36539627-36539811)
chr3 (253-383)||(3178699-3178830)
chr3 (252-383)||(10839381-10839514)
chr3 (253-379)||(19649377-19649506)
chr3 (257-379)||(54546904-54547027)
chr3 (435-525)||(8258449-8258543)
chr3 (262-383)||(22845363-22845484)
chr3 (254-379)||(8926762-8926889)
chr3 (276-383)||(46685785-46685891)
chr3 (252-379)||(33103738-33103866)
chr3 (90-204)||(23462007-23462121)
chr3 (90-204)||(23382244-23382358)
chr3 (263-354)||(47889731-47889824)
chr3 (278-379)||(51336231-51336332)
chr3 (252-342)||(48206848-48206940)
chr3 (252-382)||(6280361-6280492)
chr3 (89-187)||(36001223-36001321)
chr3 (90-175)||(23350714-23350799)
chr3 (90-206)||(23471118-23471234)
chr3 (90-145)||(23438640-23438695)
chr3 (319-434)||(27642723-27642838)
chr3 (460-525)||(8260585-8260650)
chr3 (91-187)||(23403420-23403516)
chr3 (89-141)||(23446045-23446097)
chr3 (257-379)||(19644332-19644458)
chr3 (84-187)||(23477305-23477408)
chr3 (455-525)||(8350012-8350082)
chr3 (89-143)||(23434171-23434225)
chr3 (253-317)||(36826021-36826087)
chr3 (89-141)||(23497782-23497834)
[»] chr7 (17 HSPs)
chr7 (253-438)||(34707113-34707298)
chr7 (252-435)||(44164692-44164875)
chr7 (252-435)||(10576669-10576852)
chr7 (264-435)||(34259526-34259697)
chr7 (252-434)||(29238093-29238275)
chr7 (252-388)||(24320435-24320571)
chr7 (252-435)||(29555888-29556071)
chr7 (252-388)||(32876526-32876662)
chr7 (271-435)||(29981062-29981226)
chr7 (253-432)||(19334512-19334693)
chr7 (253-379)||(33057662-33057789)
chr7 (253-379)||(17303119-17303248)
chr7 (253-379)||(10334173-10334301)
chr7 (253-379)||(26284383-26284510)
chr7 (279-379)||(9770682-9770782)
chr7 (300-379)||(15017817-15017896)
chr7 (252-379)||(43342415-43342533)
[»] chr2 (22 HSPs)
chr2 (252-435)||(42769707-42769890)
chr2 (253-435)||(29846439-29846621)
chr2 (252-435)||(14941993-14942176)
chr2 (252-435)||(19181544-19181727)
chr2 (252-435)||(14186387-14186570)
chr2 (252-435)||(40277237-40277420)
chr2 (252-361)||(1387311-1387421)
chr2 (253-379)||(6318463-6318592)
chr2 (252-382)||(33009666-33009799)
chr2 (253-432)||(3956567-3956748)
chr2 (252-337)||(3597914-3597999)
chr2 (252-374)||(41674716-41674841)
chr2 (252-383)||(14539705-14539838)
chr2 (277-379)||(43139766-43139870)
chr2 (345-437)||(3597837-3597929)
chr2 (253-379)||(40780050-40780179)
chr2 (253-379)||(28321708-28321836)
chr2 (274-379)||(2888058-2888164)
chr2 (253-348)||(23685406-23685503)
chr2 (253-335)||(32486239-32486323)
chr2 (277-348)||(25665244-25665316)
chr2 (108-140)||(16120403-16120435)
[»] chr8 (18 HSPs)
chr8 (252-432)||(21525354-21525534)
chr8 (253-436)||(22324593-22324776)
chr8 (256-436)||(42013872-42014052)
chr8 (252-435)||(35806790-35806973)
chr8 (252-435)||(33934318-33934501)
chr8 (252-435)||(42072424-42072607)
chr8 (252-435)||(26021391-26021576)
chr8 (252-383)||(19334778-19334910)
chr8 (274-377)||(24065291-24065394)
chr8 (274-390)||(43282845-43282962)
chr8 (274-371)||(21488084-21488181)
chr8 (256-383)||(16818974-16819105)
chr8 (253-435)||(10112042-10112226)
chr8 (308-420)||(16523158-16523270)
chr8 (274-346)||(34697427-34697500)
chr8 (252-379)||(2271196-2271318)
chr8 (310-382)||(16591377-16591449)
chr8 (253-381)||(2824185-2824314)
[»] chr5 (26 HSPs)
chr5 (252-435)||(6257359-6257542)
chr5 (252-435)||(23218481-23218664)
chr5 (253-431)||(38397595-38397773)
chr5 (252-436)||(37168981-37169165)
chr5 (210-435)||(39862436-39862660)
chr5 (253-438)||(16618516-16618701)
chr5 (256-434)||(15631613-15631792)
chr5 (253-432)||(8456915-8457096)
chr5 (253-379)||(10081140-10081268)
chr5 (256-386)||(614390-614522)
chr5 (252-383)||(36769075-36769207)
chr5 (253-381)||(25560330-25560460)
chr5 (252-382)||(27916133-27916266)
chr5 (253-381)||(42119617-42119747)
chr5 (274-379)||(9737986-9738094)
chr5 (276-420)||(29491378-29491521)
chr5 (274-383)||(6174762-6174873)
chr5 (253-371)||(11856290-11856410)
chr5 (277-379)||(33271275-33271377)
chr5 (274-383)||(3341121-3341230)
chr5 (274-383)||(29790220-29790328)
chr5 (282-379)||(10115185-10115283)
chr5 (279-379)||(10052505-10052606)
chr5 (300-348)||(19322058-19322106)
chr5 (275-323)||(33188403-33188451)
chr5 (253-326)||(22903252-22903329)
[»] chr4 (29 HSPs)
chr4 (252-435)||(1535767-1535950)
chr4 (252-435)||(49284353-49284536)
chr4 (252-438)||(36012132-36012317)
chr4 (252-388)||(25954746-25954882)
chr4 (256-388)||(34240993-34241125)
chr4 (252-438)||(35018932-35019117)
chr4 (252-435)||(37801213-37801396)
chr4 (279-436)||(16338161-16338318)
chr4 (252-371)||(52632514-52632633)
chr4 (256-424)||(46583511-46583669)
chr4 (253-432)||(17888502-17888683)
chr4 (253-432)||(31377385-31377565)
chr4 (253-439)||(11054448-11054638)
chr4 (253-384)||(54090176-54090308)
chr4 (325-436)||(36851335-36851446)
chr4 (274-383)||(20818584-20818694)
chr4 (252-383)||(46473988-46474121)
chr4 (253-319)||(16338309-16338375)
chr4 (258-379)||(9742538-9742661)
chr4 (253-349)||(322584-322682)
chr4 (252-384)||(50328790-50328924)
chr4 (283-383)||(10094394-10094495)
chr4 (252-379)||(12792236-12792365)
chr4 (300-382)||(47084056-47084138)
chr4 (253-379)||(35322709-35322837)
chr4 (274-379)||(19124743-19124849)
chr4 (89-140)||(12898192-12898243)
chr4 (300-348)||(5780790-5780838)
chr4 (403-436)||(34241128-34241161)
[»] chr6 (15 HSPs)
chr6 (252-435)||(24694600-24694783)
chr6 (220-423)||(14309760-14309962)
chr6 (253-435)||(9231803-9231985)
chr6 (252-437)||(13627536-13627721)
chr6 (282-404)||(1727913-1728035)
chr6 (258-384)||(13103118-13103246)
chr6 (253-379)||(28750655-28750783)
chr6 (252-435)||(11084606-11084768)
chr6 (252-383)||(27863694-27863827)
chr6 (274-379)||(34103703-34103808)
chr6 (274-350)||(11212689-11212765)
chr6 (253-350)||(11279536-11279634)
chr6 (312-383)||(24497575-24497646)
chr6 (308-348)||(8412717-8412757)
chr6 (256-317)||(24500767-24500830)
[»] chr1 (26 HSPs)
chr1 (252-435)||(42517243-42517430)
chr1 (252-435)||(7742728-7742911)
chr1 (252-435)||(49902464-49902647)
chr1 (256-435)||(5974988-5975167)
chr1 (252-435)||(48392355-48392538)
chr1 (252-435)||(3346782-3346965)
chr1 (252-435)||(10155965-10156148)
chr1 (252-435)||(47022698-47022881)
chr1 (252-371)||(29149561-29149680)
chr1 (253-439)||(23908282-23908458)
chr1 (256-437)||(38859849-38860032)
chr1 (253-383)||(10907649-10907781)
chr1 (253-383)||(42456566-42456699)
chr1 (252-379)||(26835332-26835461)
chr1 (281-379)||(5558334-5558431)
chr1 (274-383)||(30745361-30745471)
chr1 (274-383)||(30766812-30766922)
chr1 (274-380)||(30252748-30252856)
chr1 (274-377)||(13131914-13132017)
chr1 (252-360)||(44107412-44107522)
chr1 (274-350)||(45968685-45968761)
chr1 (253-378)||(14796871-14796998)
chr1 (253-378)||(14805745-14805872)
chr1 (313-378)||(37189697-37189762)
chr1 (278-379)||(26511639-26511739)
chr1 (275-317)||(8430508-8430551)
[»] scaffold0079 (2 HSPs)
scaffold0079 (279-436)||(54542-54699)
scaffold0079 (253-319)||(54485-54551)
[»] scaffold0045 (1 HSPs)
scaffold0045 (274-379)||(34457-34563)
[»] scaffold0201 (1 HSPs)
scaffold0201 (90-187)||(10196-10293)
[»] scaffold0086 (1 HSPs)
scaffold0086 (300-379)||(20836-20915)
[»] scaffold0016 (1 HSPs)
scaffold0016 (303-348)||(85547-85592)


Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 371
Target Start/End: Complemental strand, 23467864 - 23467507
Alignment:
Q  17 cacatactccattcaaccgtcattttttaataacatgttacaaaccttctctgaagactccattgcatgcatgtttgattttcagacaatagaggcttca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23467864 cacatactccattcaaccgtcattttttaataacatgttacaaaccttctctgaagactccattgcatgcatgtttgattttcagacaatagaggcttca 23467765  T
Q  117 ataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggctttaatgtttaccaccatgccgttc---ggc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||   |||    
T  23467764 ataattattcctcctattccaaaatctgatttgtgcagttttatattttccatcattctttctgagggctttaatgtttaccaccatgccgttcagtggc 23467665  T
Q  214 gaagccaggaatattgtaaagcctgggcgnnnnnnnnntttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaaga 313  Q
    | |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23467664 ggagccaggaatattgtaaagcctgggcggaaaatttttttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaaga 23467565  T
Q  314 aattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaatt 371  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||    
T  23467564 aattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaatt 23467507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 23401136 - 23400943
Alignment:
Q  17 cacatactccattcaaccgtcattttttaataacatgttacaaaccttctctgaagactccattgcatgcatgtttgattttcagacaatagaggcttca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23401136 cacatactccattcaaccgtcattttttaataacatgttacaaaccttctctgaagactccattgcatgcatctttgattttcagacaatagaggcttca 23401037  T
Q  117 ataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggctttaatgtttaccaccatgccgttc 210  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23401036 ataattattcctcctattccaaaatctgattggtgcagttttatattttgcatcattctttctgagggctttaatgtttaccaccatgccgttc 23400943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 252 - 435
Target Start/End: Complemental strand, 40846049 - 40845866
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40846049 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 40845950  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||||||||| |||| |||||||||||||||||||||| ||||  ||||| |||||| |||||||||||||||| ||||||||||    
T  40845949 agggatttacacaaaaaattgcaaaaaatttgacccggaacccgggcgaatgcccgaggtcgccgggccttagaaccgcccctg 40845866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 253 - 435
Target Start/End: Original strand, 21853194 - 21853376
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcata 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  21853194 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggttttatataagaaattcata 21853293  T
Q  353 gggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    |||||||| |||||||||||||||||||||| |||| | ||  | ||||||||||||||||||||||||||| ||||||||||    
T  21853294 gggatttacacaagaaattgcaaaaaatttggcccggagcccggccgagtgcccggggtcgccgggccttagaaccgcccctg 21853376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 252 - 434
Target Start/End: Complemental strand, 44995101 - 44994918
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttat-aggggtttatataaaaaattca 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  44995101 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataaggggtttatataagaaattca 44995002  T
Q  351 tagggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccct 434  Q
    |||||||||| |||||||||||||||||||||| |||| | ||   |||||| ||||||||||||||||||||| |||||||||    
T  44995001 tagggatttacacaagaaattgcaaaaaatttggcccggagcccgagcgagtacccggggtcgccgggccttagaaccgcccct 44994918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 253 - 435
Target Start/End: Original strand, 13856096 - 13856278
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcata 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||    
T  13856096 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataagaaattcata 13856195  T
Q  353 gggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    |||||||| ||||||||||| |||||||||| |||| | ||  ||| ||||||| ||||||||||||||||| ||||||||||    
T  13856196 gggatttacacaagaaattgaaaaaaatttggcccggagcccgggcaagtgccctgggtcgccgggccttagaaccgcccctg 13856278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 252 - 434
Target Start/End: Complemental strand, 8950636 - 8950454
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  8950636 tttgcaacatatttatagggcgtacataagaaatttcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 8950537  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccct 434  Q
    ||| ||||| |||||||||||||||||||||| |||  | ||  |||||||||||||||||||| |||||||| |||||||||    
T  8950536 aggaatttacacaagaaattgcaaaaaatttggcccagagcccgggcgagtgcccggggtcgccaggccttagaaccgcccct 8950454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 252 - 435
Target Start/End: Original strand, 5391453 - 5391636
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  5391453 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcat 5391552  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||||||||| |||||||||||  ||||| ||| | || | ||  ||||||||||| ||||||||||||| ||| ||||||||||    
T  5391553 agggatttacacaagaaattgtcaaaaaattggcgcggagcccgggcgagtgcccagggtcgccgggccatagaaccgcccctg 5391636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 252 - 408
Target Start/End: Original strand, 32352843 - 32352999
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  32352843 tttgcaacacatttatagggcgtacataagaaattgtaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcat 32352942  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccgg 408  Q
    |||||||||||||||||||||||||||| ||| |||| | ||  |||||||||||||    
T  32352943 agggatttatacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccgg 32352999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 253 - 422
Target Start/End: Original strand, 1781757 - 1781928
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||||||||||||||||||  | ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| |||||||    
T  1781757 ttgcaacacatttataggggtttacatacgaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttattggggtttatataagaaattca 1781856  T
Q  351 tagggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggcctt 422  Q
     ||||||||| | ||||||||||||||||||||  ||  | ||| ||||| ||| |||| ||||||||||||    
T  1781857 gagggatttacataagaaattgcaaaaaatttgggccagagcctgggcgactgcacgggctcgccgggcctt 1781928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 435 - 525
Target Start/End: Original strand, 8265526 - 8265616
Alignment:
Q  435 gattgctctagtctcttcatattggatgactacaagcgagagagataagagttagcagggaaatgatatactacaattggagctccctttg 525  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8265526 gattgctctagtttcttcatattggatgactacaaacgagagagataagagttagcagggaaatgatatactacaattggagctccctttg 8265616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 253 - 383
Target Start/End: Complemental strand, 43347468 - 43347337
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    |||||||| | ||||||||  |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||| |||||||     
T  43347468 ttgcaacataattatagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttgtaggggtttatataagaaattcag 43347369  T
Q  352 agggatttatacaagaaattgcaaaaaatttg 383  Q
    ||| ||||| | ||||||||||||||||||||    
T  43347368 aggaatttacataagaaattgcaaaaaatttg 43347337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 253 - 417
Target Start/End: Original strand, 20382514 - 20382679
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    ||||||| |||||||||| |  |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||| |||||||    
T  20382514 ttgcaacgcatttataggagtttacataagaaattgcaagcaaataataaaaaaatctaaagaaatttcccaatttataggggtttatataagaaattca 20382613  T
Q  351 tagggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgg 417  Q
    |||||||||| | ||||||||  ||||||||||  ||| | ||  ||| ||||||||||||||||||    
T  20382614 tagggatttacataagaaatt-aaaaaaatttgggccggagcccgggcaagtgcccggggtcgccgg 20382679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 253 - 435
Target Start/End: Original strand, 36539627 - 36539811
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||||||||||||||||||  | ||||| |||||||||| |||||||| ||||||| |||||||||||||||||||||||||| |||||||| ||||| |    
T  36539627 ttgcaacacatttataggggtttacataggaaattgcaaacaaataatcaaaaaatttaaagaaattgcccaatttataggggattatataagaaattta 36539726  T
Q  351 tagggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    |||||||||| | ||||||||||| |||||||   ||| | ||  ||||| |||||| | ||||| |||||||| ||||||||||    
T  36539727 tagggatttacataagaaattgcataaaatttaggccggagcccgggcgactgcccgagctcgccaggccttagaaccgcccctg 36539811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 253 - 383
Target Start/End: Original strand, 3178699 - 3178830
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    |||||||| ||||||||| |  |||||| |||||||||||||||||| ||||||  ||||||||||||||||||||||| | ||||||||| ||||||||    
T  3178699 ttgcaacatatttataggagtttacatacgaaattgcaagcaaataaaaaaaaaactaaagaaattgcccaatttatagagatttatataagaaattcat 3178798  T
Q  352 agggatttatacaagaaattgcaaaaaatttg 383  Q
    ||||||||| ||||||||||| ||||||||||    
T  3178799 agggatttacacaagaaattgaaaaaaatttg 3178830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 252 - 383
Target Start/End: Complemental strand, 10839514 - 10839381
Alignment:
Q  252 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattc 349  Q
    |||||||||||| |||||| |  |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||| ||||||    
T  10839514 tttgcaacacatgtataggtgtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttatagaggtttatataagaaattc 10839415  T
Q  350 atagggatttatacaagaaattgcaaaaaatttg 383  Q
    | ||  ||||| | ||||||||||||||||||||    
T  10839414 agagaaatttacataagaaattgcaaaaaatttg 10839381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 253 - 379
Target Start/End: Complemental strand, 19649506 - 19649377
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattc 349  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||  ||||||| ||||||||||| |||||||||| |||||||||||| ||||||    
T  19649506 ttgcaacacatttatagggaattacataagaaattgcaagcaaataatccaaaaaatctaaagaaattgtccaatttataagggtttatataagaaattc 19649407  T
Q  350 atagggatttatacaagaaattgcaaaaaa 379  Q
    |||| |||||| | |||||||| |||||||    
T  19649406 atagcgatttacataagaaattacaaaaaa 19649377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 257 - 379
Target Start/End: Original strand, 54546904 - 54547027
Alignment:
Q  257 aacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcataggg 355  Q
    |||||||||||||||  | ||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||     
T  54546904 aacacatttatagggatttacataagaaattgtaagcaaataatcaaaaatctaaagaaattgtccaatttataggggtttatataagaaattcaaagga 54547003  T
Q  356 atttatacaagaaattgcaaaaaa 379  Q
    |||||   ||||||||||||||||    
T  54547004 atttacgtaagaaattgcaaaaaa 54547027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 435 - 525
Target Start/End: Original strand, 8258449 - 8258543
Alignment:
Q  435 gattgctctagtctcttcatat----tggatgactacaagcgagagagataagagttagcagggaaatgatatactacaattggagctccctttg 525  Q
    |||||||||||||||||||||     ||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8258449 gattgctctagtctcttcataagaaatggatgactacaaacgtgagagataagagttagtagggaaatgatatactacaattggagctccctttg 8258543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 262 - 383
Target Start/End: Complemental strand, 22845484 - 22845363
Alignment:
Q  262 atttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttat 361  Q
    ||||||||||  || |||| ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| ||||| |   | |||||     
T  22845484 atttatagggtttatataaaaaattgcaagcaaataataaaaaatctaaagaaattgtcaaatttataggggtttatataagaaatttaggtgaatttac 22845385  T
Q  362 acaagaaattgcaaaaaatttg 383  Q
    | ||||||||||||||||||||    
T  22845384 ataagaaattgcaaaaaatttg 22845363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 254 - 379
Target Start/End: Original strand, 8926762 - 8926889
Alignment:
Q  254 tgcaacacatttatagggcgta-cataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||| ||  || |||||||||||||||||||||||| ||||||| || |||||||||| ||||||||||||||||||| | |||||||     
T  8926762 tgcaacacatttataagggttaacataagaaattgcaagcaaataatcaaaaaatctacagaaattgccaaatttataggggtttatatcagaaattcag 8926861  T
Q  352 agggatttatacaagaaattgcaaaaaa 379  Q
    ||| ||||| | | ||||||||||||||    
T  8926862 aggaatttacatatgaaattgcaaaaaa 8926889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 276 - 383
Target Start/End: Complemental strand, 46685891 - 46685785
Alignment:
Q  276 cataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaa 375  Q
    ||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||| |||||||||| ||||| |  |||||||| | |||||| |||||    
T  46685891 cataagaaattgcaaacaaataataaaaaatataaagaaattgtcaaatttataggagtttatataagaaatttagggggatttacataagaaa-tgcaa 46685793  T
Q  376 aaaatttg 383  Q
    ||||||||    
T  46685792 aaaatttg 46685785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 252 - 379
Target Start/End: Original strand, 33103738 - 33103866
Alignment:
Q  252 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    ||||||||||||||||| ||  | |||||||||||| ||||||||||||||||||| |||| |||||  |||||||||||||  |||||||| ||||| |    
T  33103738 tttgcaacacatttataaggatttacataagaaattacaagcaaataataaaaaatttaaataaattatccaatttatagggacttatataagaaattta 33103837  T
Q  351 tagggatttatacaagaaattgcaaaaaa 379  Q
      || ||||| | ||||||||||||||||    
T  33103838 agggaatttacataagaaattgcaaaaaa 33103866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 23462121 - 23462007
Alignment:
Q  90 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggcttta 189  Q
    |||||||||||||||||  |||||||||||| ||||| ||||||| | |||||||| |||||  |||| |||||||||||| || |||||| |||||| |    
T  23462121 tttgattttcagacaatcaaggcttcaataactattcttcctattgctaaatctgacttgtgtggtttcatattttgcatccttttttctgagggcttca 23462022  T
Q  190 atgtttaccaccatg 204  Q
     |||| |||||||||    
T  23462021 ctgttaaccaccatg 23462007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 23382358 - 23382244
Alignment:
Q  90 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggcttta 189  Q
    |||||||||||||||||  |||||||||||| ||||| ||||||| | |||||||| |||||  |||| |||||||||||| || |||||| |||||| |    
T  23382358 tttgattttcagacaatcaaggcttcaataagtattcttcctattgctaaatctgacttgtgtggtttcatattttgcatccttttttctgagggcttca 23382259  T
Q  190 atgtttaccaccatg 204  Q
     |||| || ||||||    
T  23382258 ctgttaacaaccatg 23382244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 263 - 354
Target Start/End: Original strand, 47889731 - 47889824
Alignment:
Q  263 tttatagggcgtacataagaaattg-caagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataaaaaattcatagg 354  Q
    |||||||||  ||||| |||||||| |||| ||||||||||||| | ||||||||||||||||||||||||  ||||||||| |||||||||||    
T  47889731 tttatagggtttacattagaaattgtcaagtaaataataaaaaaatttaaagaaattgcccaatttataggaatttatataagaaattcatagg 47889824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 278 - 379
Target Start/End: Original strand, 51336231 - 51336332
Alignment:
Q  278 taagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaa 377  Q
    |||||||||||||| |||||||||||||| ||||||||||| | ||||||||  | |||||||||||||||||   | ||||| | || |||||||||||    
T  51336231 taagaaattgcaagtaaataataaaaaatttaaagaaattgtcaaatttataaagatttatataaaaaattcaggagaatttacataaaaaattgcaaaa 51336330  T
Q  378 aa 379  Q
    ||    
T  51336331 aa 51336332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 342
Target Start/End: Original strand, 48206848 - 48206940
Alignment:
Q  252 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataa 342  Q
    ||||||||||||||||| | |  |||||||||||||||||| ||||||| ||||||| |||| |||||| | |||||||||||||||||||||    
T  48206848 tttgcaacacatttataagtgtttacataagaaattgcaagtaaataatcaaaaaatctaaaaaaattgtcaaatttataggggtttatataa 48206940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 252 - 382
Target Start/End: Complemental strand, 6280492 - 6280361
Alignment:
Q  252 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| ||||||||||| |||||||    
T  6280492 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 6280393  T
Q  351 tagggatttatacaagaaattgcaaaaaattt 382  Q
      |  ||||| | ||||||||||| |||||||    
T  6280392 gggaaatttacataagaaattgcacaaaattt 6280361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 187
Target Start/End: Complemental strand, 36001321 - 36001223
Alignment:
Q  89 gtttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggctt 187  Q
    |||| |||||||  ||| |||||| || ||| |||||||||||||||||||||||||||||||  |||| || |||||||||||| | |||| ||||||    
T  36001321 gttttattttcaatcaacagaggcctcgatagttattcctcctattccaaaatctgatttgtgttgtttaattttttgcatcattttctctgagggctt 36001223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 23350799 - 23350714
Alignment:
Q  90 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattct 175  Q
    ||||||||| ||||| ||||||||||||||| ||||||||| |||||||||||| | |||||  |||| ||||| |||||| ||||    
T  23350799 tttgattttaagacagtagaggcttcaataagtattcctccaattccaaaatcttacttgtgtggtttcatattctgcatcgttct 23350714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 23471234 - 23471118
Alignment:
Q  90 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggcttta 189  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||||  ||||||||  || ||  |||| |||||| ||||| || |||||| |||||| |    
T  23471234 tttgattttcagacaatcgaggcttcaataactattcttcctattaaaaaatctgtcttatgtggtttcatatttcgcatccttttttctgagggcttca 23471135  T
Q  190 atgtttaccaccatgcc 206  Q
     | || |||||||||||    
T  23471134 ctattaaccaccatgcc 23471118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 23438695 - 23438640
Alignment:
Q  90 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctga 145  Q
    ||||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||    
T  23438695 tttgattttcagacaactgaggcttcaataactattcttcctattccaaaatctga 23438640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 434
Target Start/End: Original strand, 27642723 - 27642838
Alignment:
Q  319 cccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccggg 418  Q
    ||||||||||| || ||||||||| ||||||| | ||||||| | ||||||||||||||||||||| | | | || |||| | |||||  | ||||||||    
T  27642723 cccaatttataaggatttatataagaaattcaaaaggatttacataagaaattgcaaaaaatttgagcaggagcccaggcaactgcccaagctcgccggg 27642822  T
Q  419 ccttagtaccgcccct 434  Q
    |||||| || ||||||    
T  27642823 ccttagaactgcccct 27642838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 460 - 525
Target Start/End: Original strand, 8260585 - 8260650
Alignment:
Q  460 atgactacaagcgagagagataagagttagcagggaaatgatatactacaattggagctccctttg 525  Q
    |||||||||| || ||||||||||||||| ||||||||| | | |||||||||||||||| |||||    
T  8260585 atgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctctctttg 8260650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 187
Target Start/End: Complemental strand, 23403516 - 23403420
Alignment:
Q  91 ttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggctt 187  Q
    ||||||| |||||||| ||||||||||||| ||||| ||||||| | |||||||  ||| |  |||| |||||||||||| || |||||| ||||||    
T  23403516 ttgatttgcagacaatcgaggcttcaataactattcttcctattactaaatctgtcttgcgtggtttcatattttgcatccttttttctgagggctt 23403420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 23446097 - 23446045
Alignment:
Q  89 gtttgattttcagacaatagaggcttcaataattattcctcctattccaaaat 141  Q
    |||||||||||| |||||| ||||||||||||  |||||||||||||||||||    
T  23446097 gtttgattttcaaacaataaaggcttcaataaccattcctcctattccaaaat 23446045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 379
Target Start/End: Complemental strand, 19644458 - 19644332
Alignment:
Q  257 aacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgtaaagaaa-ttgcccaatttataggggtttatataaaaaattcata 352  Q
    |||||||||||||||  | |||||||||||||||| ||||||||  ||||||| |||| ||| |||  |||||||||  | |||||||||||||||||||    
T  19644458 aacacatttatagggaattacataagaaattgcaatcaaataatccaaaaaatctaaaaaaaattgttcaatttataaagatttatataaaaaattcata 19644359  T
Q  353 gggatttatacaagaaattgcaaaaaa 379  Q
    |  ||||| | || ||||| |||||||    
T  19644358 gcaatttacataaaaaattacaaaaaa 19644332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 84 - 187
Target Start/End: Complemental strand, 23477408 - 23477305
Alignment:
Q  84 tgcatgtttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgg 183  Q
    |||| |||||||||||| |||||  ||||||||||||  ||||||||||||||||||| | |  |||   |||| ||||| |||| ||||||||||| ||    
T  23477408 tgcaagtttgattttcaaacaatgaaggcttcaataaccattcctcctattccaaaatataacctgtctggtttcatattctgcaccattctttctgagg 23477309  T
Q  184 gctt 187  Q
    ||||    
T  23477308 gctt 23477305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 525
Target Start/End: Original strand, 8350012 - 8350082
Alignment:
Q  455 attggatgactacaagcgagagagataagagttagcagggaaatgatatactacaattggagctccctttg 525  Q
    |||| ||||||||||||| ||| ||||| ||||| ||||||||| | | |||| |||||||||||||||||    
T  8350012 attgcatgactacaagcgtgagggataatagttaacagggaaataagaaactataattggagctccctttg 8350082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 23434225 - 23434171
Alignment:
Q  89 gtttgattttcagacaatagaggcttcaataattattcctcctattccaaaatct 143  Q
    |||||||||||| |||| | ||||||||||||  |||||||||||||||||||||    
T  23434225 gtttgattttcaaacaacaaaggcttcaataaccattcctcctattccaaaatct 23434171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 36826087 - 36826021
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaat-aataaaaaatgtaaagaaatt 317  Q
    |||||||||||||||||||  | |||||||||| ||||||||||| | |||||||| ||||||||||    
T  36826087 ttgcaacacatttataggggtttacataagaaactgcaagcaaatcattaaaaaatttaaagaaatt 36826021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 23497834 - 23497782
Alignment:
Q  89 gtttgattttcagacaatagaggcttcaataattattcctcctattccaaaat 141  Q
    |||||||||||| |||||  ||||||||||||  |||||||| ||||||||||    
T  23497834 gtttgattttcaaacaatgaaggcttcaataaccattcctccgattccaaaat 23497782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 5e-79; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 253 - 438
Target Start/End: Original strand, 34707113 - 34707298
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcata 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34707113 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 34707212  T
Q  353 gggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctgatt 438  Q
    |||||||| |||||||||||||||||||||| |||| | ||  ||||||||||||||||||||||| ||||| |||||||||||||    
T  34707213 gggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggtcttagaaccgcccctgatt 34707298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 252 - 435
Target Start/End: Complemental strand, 44164875 - 44164692
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44164875 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 44164776  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||  ||||| |||||||||||||||||||||| |||| | ||  ||||||||||||||||||||||||||||| ||||||||||    
T  44164775 agaaatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccctg 44164692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 252 - 435
Target Start/End: Original strand, 10576669 - 10576852
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10576669 tttgcaatacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 10576768  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||||||||| |||||||||||||||||||||| |||| | ||  || ||||||||||||||||||| |||||| ||||||||||    
T  10576769 agggatttacacaagaaattgcaaaaaatttggcccggagcccgggtgagtgcccggggtcgccggaccttagaaccgcccctg 10576852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 264 - 435
Target Start/End: Original strand, 34259526 - 34259697
Alignment:
Q  264 ttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatac 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  34259526 ttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacac 34259625  T
Q  364 aagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    |||||||||||||||| ||| |||| | ||  ||||||||||||| ||||||||||||||| ||||||||||    
T  34259626 aagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggagtcgccgggccttagaaccgcccctg 34259697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 252 - 434
Target Start/End: Complemental strand, 29238275 - 29238093
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||||||||||||| ||||||||    
T  29238275 tttgcaacacatttatagggcctacataagaaattgtaagcaaataataaaaaatgtaaagaaattttccaatttttaggggtttatataagaaattcat 29238176  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccct 434  Q
    ||||||||| |||||||||||||||||| ||| |||| | ||  |||||||||||||||| |||||||||||| |||||||||    
T  29238175 agggatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggttgccgggccttagaaccgcccct 29238093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 252 - 388
Target Start/End: Complemental strand, 24320571 - 24320435
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  24320571 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcgt 24320472  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccg 388  Q
    ||| ||||| |||||||||||||||||||||| ||||    
T  24320471 aggaatttacacaagaaattgcaaaaaatttggcccg 24320435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 252 - 435
Target Start/End: Complemental strand, 29556071 - 29555888
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  29556071 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcat 29555972  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||| ||||| |||||||||||  ||||| ||| |||| |  |  ||||||||||| ||||||| ||||| ||| ||||||||||    
T  29555971 aggaatttacacaagaaattgtcaaaaaattggcccggaggccgggcgagtgcccagggtcgctgggccatagaaccgcccctg 29555888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 252 - 388
Target Start/End: Complemental strand, 32876662 - 32876526
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  32876662 tttgcaacacatttatagagcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcat 32876563  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccg 388  Q
    |||||| || |||||||||||||||||||||| ||||    
T  32876562 agggatctacacaagaaattgcaaaaaatttggcccg 32876526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 271 - 435
Target Start/End: Complemental strand, 29981226 - 29981062
Alignment:
Q  271 gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaat 370  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||  |||||||||| ||||||||||||||||| |||||||||    
T  29981226 gcgtacataagaaattgcaagcaaataataaaaaatataaagaaattgtccaatttatagaagtttatataagaaattcatagggatttacacaagaaat 29981127  T
Q  371 tgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||||||| | ||| |||| | ||  |||||||||||| |||||||||| ||||| ||||||||||    
T  29981126 tgcaaaagaattggcccggagcccgggcgagtgcccgaggtcgccgggtcttagaaccgcccctg 29981062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 253 - 432
Target Start/End: Complemental strand, 19334693 - 19334512
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||||||| ||||||||||  || |||||||||||||||||||||||||||||  | ||||||||||| ||||||||||||||||||||||| |||||||    
T  19334693 ttgcaacaaatttatagggtttatataagaaattgcaagcaaataataaaaaaaatctaaagaaattgtccaatttataggggtttatataagaaattca 19334594  T
Q  351 tagggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgccc 432  Q
    |||| ||||| | |||||||||||||||| |||  ||||||||| || ||||| |||||||||||||||| ||| |||||||    
T  19334593 taggtatttacataagaaattgcaaaaaaattgggccgaaacctgggggagtgaccggggtcgccgggccatagaaccgccc 19334512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 253 - 379
Target Start/End: Complemental strand, 33057789 - 33057662
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||| | |||||||||||  ||||||||||||| |||||||| ||||||||    
T  33057789 ttgcaacacatttataggatttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgttcaatttataggggattatataagaaattcat 33057690  T
Q  352 agggatttatacaagaaattgcaaaaaa 379  Q
    ||||||||| | ||||||||| ||||||    
T  33057689 agggatttacataagaaattgaaaaaaa 33057662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 253 - 379
Target Start/End: Complemental strand, 17303248 - 17303119
Alignment:
Q  253 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttataggggtttatataaaaaattc 349  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||  | |||||||||||||||||||| | |||||||||||| ||||||    
T  17303248 ttgcaacacatttatagtggtttacataagaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttacaagggtttatataagaaattc 17303149  T
Q  350 atagggatttatacaagaaattgcaaaaaa 379  Q
    ||||| ||||| | ||||||||||||||||    
T  17303148 ataggaatttacataagaaattgcaaaaaa 17303119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 253 - 379
Target Start/End: Original strand, 10334173 - 10334301
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaa-atgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||||||||||||||||||  | ||||||||||||||||||||||| |||||| || |||||||||||||||||||||| | |||||||||| |||||||    
T  10334173 ttgcaacacatttataggggtttacataagaaattgcaagcaaatattaaaaatatctaaagaaattgcccaatttataagagtttatataagaaattca 10334272  T
Q  351 tagggatttatacaagaaattgcaaaaaa 379  Q
     ||| ||||| | ||||||||||||||||    
T  10334273 gaggaatttacataagaaattgcaaaaaa 10334301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 253 - 379
Target Start/End: Complemental strand, 26284510 - 26284383
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    |||||||||||||||||||  | ||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||||   |||| ||||| |||||||     
T  26284510 ttgcaacacatttataggggtttacaaaagaaattgcaagaaaataataaaaaatctaaagaaattgtccaatttatactagttt-tataagaaattcag 26284412  T
Q  352 aggga-tttatacaagaaattgcaaaaaa 379  Q
    ||||| |||| | ||||||||||||||||    
T  26284411 agggattttacataagaaattgcaaaaaa 26284383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 279 - 379
Target Start/End: Original strand, 9770682 - 9770782
Alignment:
Q  279 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaaa 378  Q
    ||||||||||||||||||||| |||| | ||||||||||| |||||| |||| ||||||||||| |||||||    |||||| | |||||||||||||||    
T  9770682 aagaaattgcaagcaaataatcaaaagtctaaagaaattgtccaattcatagtggtttatataagaaattcaggatgatttacataagaaattgcaaaaa 9770781  T
Q  379 a 379  Q
    |    
T  9770782 a 9770782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 300 - 379
Target Start/End: Original strand, 15017817 - 15017896
Alignment:
Q  300 aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaaaa 379  Q
    ||||||| ||||||||||| |||||||||| | |||||||||| ||||||| ||| ||||| | ||||||||||||||||    
T  15017817 aaaaaatctaaagaaattgtccaatttatacgcgtttatataagaaattcagaggaatttacataagaaattgcaaaaaa 15017896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 379
Target Start/End: Original strand, 43342415 - 43342533
Alignment:
Q  252 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||| |||||||||||||| |  |||||||||||||||||  |||    ||||||| ||||||||||||||||       |||||||||||| |||||||    
T  43342415 tttgaaacacatttataggtgtttacataagaaattgcaataaaa----aaaaaatctaaagaaattgcccaaa------gggtttatataagaaattca 43342504  T
Q  351 tagggatttatacaagaaattgcaaaaaa 379  Q
     ||| ||||| | ||||||||||||||||    
T  43342505 gaggaatttacataagaaattgcaaaaaa 43342533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 7e-78; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 252 - 435
Target Start/End: Complemental strand, 42769890 - 42769707
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42769890 tttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 42769791  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||||||||| |||||||||||||||||||||| |||| | ||  ||||||||||||||||||||||||||||| ||||||||||    
T  42769790 agggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccctg 42769707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 253 - 435
Target Start/End: Original strand, 29846439 - 29846621
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcata 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  29846439 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcata 29846538  T
Q  353 gggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    |||||||| |||||||||||||||||||||| |||| | ||  |||||||||||||||||| |||||||||| ||||||||||    
T  29846539 gggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgtcgggccttagaaccgcccctg 29846621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 252 - 435
Target Start/End: Complemental strand, 14942176 - 14941993
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14942176 tttgcaacacatttataaggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 14942077  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||||||||| |||||||||||||||||||||| |||| | ||  |||||||| |||||||||||| ||||||| ||||||||||    
T  14942076 agggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgtccggggtcgccgagccttagaaccgcccctg 14941993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 252 - 435
Target Start/End: Original strand, 19181544 - 19181727
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19181544 tttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 19181643  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||| ||||| |||||||||||||||||||||| |||  | || ||||||||| |||||||||||||||||||| ||||||||||    
T  19181644 aggaatttacacaagaaattgcaaaaaatttggcccatagcccaggcgagtgtccggggtcgccgggccttagaaccgcccctg 19181727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 252 - 435
Target Start/End: Complemental strand, 14186570 - 14186387
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  14186570 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaagtgtaaagaaattgcccaatttataggggtttatataagaaattcat 14186471  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||||||||| |||||||||| ||||||||||| |||| | |   |||||||||| |||||||||||||||||| ||||||||||    
T  14186470 agggatttacacaagaaattacaaaaaatttggcccggagctcgggcgagtgcctggggtcgccgggccttagaaccgcccctg 14186387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 252 - 435
Target Start/End: Complemental strand, 40277420 - 40277237
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||    
T  40277420 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatttat 40277321  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||||||||| | || ||||||||||||||||| |||| | ||  | | ||||||||||||||||||||||||| ||||||||||    
T  40277320 agggatttacataaaaaattgcaaaaaatttggcccggagcccggacaagtgcccggggtcgccgggccttagaaccgcccctg 40277237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 252 - 361
Target Start/End: Complemental strand, 1387421 - 1387311
Alignment:
Q  252 tttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||||||||||||| || |||  ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||| |||||||    
T  1387421 tttgcaacacatttgtaagggtttacataagaaattgcaagcaaataataaaaaatctaaagaaattacccaatttataggggtttatctaagaaattca 1387322  T
Q  351 tagggatttat 361  Q
    |||||||||||    
T  1387321 tagggatttat 1387311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 253 - 379
Target Start/End: Complemental strand, 6318592 - 6318463
Alignment:
Q  253 ttgcaacacatttataggg-cgtacataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttataggggtttatataaaaaattc 349  Q
    ||||||||||||||||||| | |||||  |||||||||||||||||||||||||  | ||||||||||||||||||||||||| ||||||||| ||||||    
T  6318592 ttgcaacacatttataggggcttacatttgaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttatagggatttatataagaaattc 6318493  T
Q  350 atagggatttatacaagaaattgcaaaaaa 379  Q
    ||||||||||| | ||||||||| ||||||    
T  6318492 atagggatttacataagaaattgaaaaaaa 6318463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 252 - 382
Target Start/End: Original strand, 33009666 - 33009799
Alignment:
Q  252 tttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataa--aaaatgtaaagaaattgcccaatttataggggtttatataaaaaatt 348  Q
    |||||||||| |||||| |||  ||||||| ||||||||||||||||||||  ||||| ||||||||||| |||||||||| || ||||||||| |||||    
T  33009666 tttgcaacacgtttatatgggtttacataaaaaattgcaagcaaataataataaaaatctaaagaaattgtccaatttataaggatttatataacaaatt 33009765  T
Q  349 catagggatttatacaagaaattgcaaaaaattt 382  Q
    |||||||||||||| ||||||||| |||||||||    
T  33009766 catagggatttatataagaaattgtaaaaaattt 33009799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 253 - 432
Target Start/End: Original strand, 3956567 - 3956748
Alignment:
Q  253 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgt-aaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    ||||||||||||||||| ||  |||||  |||||||||||||||||||||||||| | |||||||||| |||||||| |||||||||||||| |||||||    
T  3956567 ttgcaacacatttatagaggtttacatttgaaattgcaagcaaataataaaaaattttaaagaaattgtccaatttacaggggtttatataataaattca 3956666  T
Q  351 tagggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgccc 432  Q
    |||||||||| | || |||||| |||   ||||  ||| | ||  ||||||||||||||||| ||||||| ||| |||||||    
T  3956667 tagggatttacataaaaaattgaaaattttttgggccggagcccgggcgagtgcccggggtcaccgggccatagaaccgccc 3956748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 252 - 337
Target Start/End: Complemental strand, 3597999 - 3597914
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggttta 337  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||    
T  3597999 tttgcaatacatttatagggcgtacgtaagaaattgcaagtaaataataaaaaatgtaaagaaattgtccaatttatagggattta 3597914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 252 - 374
Target Start/End: Complemental strand, 41674841 - 41674716
Alignment:
Q  252 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaatt 348  Q
    ||||||||||||||||||||  | | ||||||||||||||||||||| |  ||||||| ||||||||||| |||||||||| ||||||||||||||||||    
T  41674841 tttgcaacacatttatagggatttatataagaaattgcaagcaaatagttaaaaaaatctaaagaaattgtccaatttataagggtttatataaaaaatt 41674742  T
Q  349 catagggatttatacaagaaattgca 374  Q
    || || |||||| | |||||||||||    
T  41674741 cagagagatttacataagaaattgca 41674716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 252 - 383
Target Start/End: Complemental strand, 14539838 - 14539705
Alignment:
Q  252 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataaaaaattc 349  Q
    ||||||||||||||||||| |  || ||||||||||||||| ||||||||||||| | ||||||||||||| ||||||||||  ||||||||| ||||||    
T  14539838 tttgcaacacatttataggtgtttatataagaaattgcaagaaaataataaaaaaatctaaagaaattgcctaatttataggaatttatataagaaattc 14539739  T
Q  350 atagggatttatacaagaaattgcaaaaaatttg 383  Q
    | ||| | ||| | ||||||||||||||||||||    
T  14539738 agaggaaattacataagaaattgcaaaaaatttg 14539705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 277 - 379
Target Start/End: Original strand, 43139766 - 43139870
Alignment:
Q  277 ataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgca 374  Q
    |||||||||||||||||||||||||||||  | |||||||||||| |||||||||||||||||||||| ||||| | ||| | ||| | |||||||||||    
T  43139766 ataagaaattgcaagcaaataataaaaaaaatctaaagaaattgctcaatttataggggtttatataagaaattaagaggaacttacataagaaattgca 43139865  T
Q  375 aaaaa 379  Q
    |||||    
T  43139866 aaaaa 43139870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 345 - 437
Target Start/End: Complemental strand, 3597929 - 3597837
Alignment:
Q  345 aattcatagggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctgat 437  Q
    |||| ||||||||||| |||||||||||||||||||||| |||| | ||  |||||||||| |||||||||||||||||| ||||||||||||    
T  3597929 aatttatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccctgat 3597837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 253 - 379
Target Start/End: Original strand, 40780050 - 40780179
Alignment:
Q  253 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataa-taaaaaatgtaaagaaattgcccaatttataggg-gtttatataaaaaattc 349  Q
    |||||||| |||||||| ||  ||||||||||||||||||||||||| |||||||| |||| |||||| | ||||||||||| |||||||||| ||||||    
T  40780050 ttgcaacatatttatagcggtttacataagaaattgcaagcaaataattaaaaaatttaaaaaaattgtcaaatttatagggtgtttatataagaaattc 40780149  T
Q  350 atagggatttatacaagaaattgcaaaaaa 379  Q
    | ||| ||||| | |||||||| |||||||    
T  40780150 agaggaatttacataagaaattacaaaaaa 40780179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 253 - 379
Target Start/End: Complemental strand, 28321836 - 28321708
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||||||||||||||||||  | | ||||||||||| ||||||||||| |||||||  || |||||||||||||||||| |||||||||||| | |||||    
T  28321836 ttgcaacacatttataggggtttatataagaaattggaagcaaataatcaaaaaattcaatgaaattgcccaatttataagggtttatataagatattca 28321737  T
Q  351 tagggatttatacaagaaattgcaaaaaa 379  Q
       | ||||| | ||||||||||||||||    
T  28321736 ggagaatttacataagaaattgcaaaaaa 28321708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 2888058 - 2888164
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattg 372  Q
    |||||||||  |||| ||||| |||||||||| | |||| ||||||  ||||||||||| ||||||||||||||||||||| |||||| | ||||||||     
T  2888058 tacataagactttgctagcaattaataaaaaaatctaaaaaaattgttcaatttataggagtttatataaaaaattcatagagatttacataagaaatta 2888157  T
Q  373 caaaaaa 379  Q
    |||||||    
T  2888158 caaaaaa 2888164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 348
Target Start/End: Complemental strand, 23685503 - 23685406
Alignment:
Q  253 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaatt 348  Q
    |||||||| ||||||| |||  |||||||||||||||||||||||||| |||| || |||| |||||| | |||||||| || ||||||||| |||||    
T  23685503 ttgcaacatatttataagggtttacataagaaattgcaagcaaataatcaaaatatataaataaattgtcaaatttataaggatttatataagaaatt 23685406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 32486239 - 32486323
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataa-taaaaaatgtaaagaaattgcccaatttataggggtt 335  Q
    |||||||||||||||| | |  || |||||||||||||||||||||| |||||||| | || ||||| |||||||||||||||||    
T  32486239 ttgcaacacatttataagtgtttatataagaaattgcaagcaaataattaaaaaatcttaaaaaattacccaatttataggggtt 32486323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 348
Target Start/End: Original strand, 25665244 - 25665316
Alignment:
Q  277 ataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaatt 348  Q
    |||| |||||||||||||||||| ||||||  |||||||||| |||||||||||   |||||||||| |||||    
T  25665244 ataaaaaattgcaagcaaataatcaaaaaacttaaagaaattacccaatttataaatgtttatataagaaatt 25665316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 16120435 - 16120403
Alignment:
Q  108 gaggcttcaataattattcctcctattccaaaa 140  Q
    ||||||||||| |||||||||||||||||||||    
T  16120435 gaggcttcaatcattattcctcctattccaaaa 16120403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 4e-76; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 252 - 432
Target Start/End: Original strand, 21525354 - 21525534
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  21525354 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcat 21525453  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgccc 432  Q
    ||||||||| ||||||||||||||||||||||||||| | ||  ||||||||||||||||| ||||||||||| |||||||    
T  21525454 agggatttacacaagaaattgcaaaaaatttgacccggagccctggcgagtgcccggggtcaccgggccttagaaccgccc 21525534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 253 - 436
Target Start/End: Original strand, 22324593 - 22324776
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcata 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22324593 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 22324692  T
Q  353 gggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctga 436  Q
    |||||||| |||||||||| ||||||||||| |||| | ||  |||||||||||||||| |||||||||||| |||||||||||    
T  22324693 gggatttacacaagaaattacaaaaaatttggcccggagcccgggcgagtgcccggggttgccgggccttagaaccgcccctga 22324776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 256 - 436
Target Start/End: Original strand, 42013872 - 42014052
Alignment:
Q  256 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcataggg 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||    
T  42013872 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaagaaattgcccaatttataggagtttatataagaaattcataggg 42013971  T
Q  356 atttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctga 436  Q
    ||||| |||||||||||||||||||||| |||||||||  | | ||||||||||||||||||||||||| |||||||||||    
T  42013972 atttacacaagaaattgcaaaaaatttggcccgaaacccggacaagtgcccggggtcgccgggccttagaaccgcccctga 42014052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 252 - 435
Target Start/End: Original strand, 35806790 - 35806973
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35806790 tttgcaacacatttatagggtgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 35806889  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    || |||||| |||||||||||||||||||||| |||| | ||  | ||||||||||||||||||||||||||| ||||||||||    
T  35806890 agagatttacacaagaaattgcaaaaaatttggcccggagcccggccgagtgcccggggtcgccgggccttagaaccgcccctg 35806973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 252 - 435
Target Start/End: Complemental strand, 33934501 - 33934318
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||    
T  33934501 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaaaaaattgcccaatttataggggtttatataagaaattcat 33934402  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||| ||||| | |||||||||||||||||||| || | | ||  ||||||||||||||||||||||||||||  ||||||||||    
T  33934401 aggaatttacaaaagaaattgcaaaaaatttggcctggagcccgggcgagtgcccggggtcgccgggccttaaaaccgcccctg 33934318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 252 - 435
Target Start/End: Original strand, 42072424 - 42072607
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    |||||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  42072424 tttgcaacacatttatattgtttacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcat 42072523  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||||||||| |||||||||||||||||| ||| |||| | ||  ||||||||||||||||||||||||| ||| ||||||||||    
T  42072524 agggatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggtcgccgggccatagaaccgcccctg 42072607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 252 - 435
Target Start/End: Original strand, 26021391 - 26021576
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaa-aatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||    
T  26021391 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaaatgtaaagaaattacccaatttataggggtttatataagaaattca 26021490  T
Q  351 tagggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgcc-gggccttagtaccgcccctg 435  Q
    |||||||||| | |||||||||||||||||||| | || | ||  ||| ||||||||||||| || ||||||||| ||||||||||    
T  26021491 tagggatttacaaaagaaattgcaaaaaatttggcacggagcccgggctagtgcccggggtcaccggggccttagaaccgcccctg 26021576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 252 - 383
Target Start/End: Original strand, 19334778 - 19334910
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaa-aatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    ||||||||| ||||||||||  |||||||||||||| ||||||||||||||| ||| ||||||||||| | ||||||||| |||||||||||||||||||    
T  19334778 tttgcaacatatttataggggttacataagaaattgtaagcaaataataaaacaatttaaagaaattgtctaatttatagaggtttatataaaaaattca 19334877  T
Q  351 tagggatttatacaagaaattgcaaaaaatttg 383  Q
    || | ||||||| ||||||||||||||||||||    
T  19334878 taagaatttatataagaaattgcaaaaaatttg 19334910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 274 - 377
Target Start/End: Original strand, 24065291 - 24065394
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgc 373  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||| |||||||||| ||||||||  |||||||||    
T  24065291 tacataagaaattgcaagcaaataataaaaaagctaaagaaattgcccaatttataggagtttatataagaaattcatagagatttatatgagaaattgc 24065390  T
Q  374 aaaa 377  Q
    ||||    
T  24065391 aaaa 24065394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 274 - 390
Target Start/End: Complemental strand, 43282962 - 43282845
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaatg-taaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattg 372  Q
    |||||||||||| |||||||||||||||||| |  ||| |||||| |||||||||||||| ||||||||| ||||||| | | ||||| | |||||||||    
T  43282962 tacataagaaatagcaagcaaataataaaaatttctaatgaaattacccaatttatagggatttatataataaattcagaagaatttacataagaaattg 43282863  T
Q  373 caaaaaatttgacccgaa 390  Q
     ||||||||||| |||||    
T  43282862 taaaaaatttgagccgaa 43282845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 274 - 371
Target Start/End: Original strand, 21488084 - 21488181
Alignment:
Q  274 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaatt 371  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||| ||||||| ||||| ||||||| ||| ||||| ||||||||||    
T  21488084 tacataagaaattgcaagc-aataataaaaaaatctaaagaaattgtccaatttatcggggtttctataagaaattcaaaggaatttacacaagaaatt 21488181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 383
Target Start/End: Complemental strand, 16819105 - 16818974
Alignment:
Q  256 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatg---taaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||  | | |||| |||||||||||||||||||||| |     || ||||||| |||||||||||||||||||||||| |||||||     
T  16819105 caacacatttataggggtttatataaaaaattgcaagcaaataataaaatactagatagagaaattacccaatttataggggtttatataagaaattcaa 16819006  T
Q  352 agggatttatacaagaaattgcaaaaaatttg 383  Q
     | |||||| | ||||||||||||||||||||    
T  16819005 ggagatttacaaaagaaattgcaaaaaatttg 16818974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 253 - 435
Target Start/End: Original strand, 10112042 - 10112226
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||||||| ||||||||||  | ||||||||||||||||  ||||||| |||||||  |||||||||| |||||||||| | |||||||||| ||||| |    
T  10112042 ttgcaacatatttataggggtttacataagaaattgcaaataaataatcaaaaaattaaaagaaattgtccaatttataagagtttatataagaaattaa 10112141  T
Q  351 tagggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
     ||| ||||| | || ||||||||||||| |||| ||  | ||  ||| | || || || |||||||||||||| ||||||||||    
T  10112142 gaggaatttacataaaaaattgcaaaaaaattgagccagagcccgggcaactgtccaggctcgccgggccttagaaccgcccctg 10112226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 308 - 420
Target Start/End: Original strand, 16523158 - 16523270
Alignment:
Q  308 taaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccg 407  Q
    ||||||| ||||||||||||||||| ||||||||| ||||||||||||||||| | | ||||||| ||||||||||  ||| | ||   ||||||| |||    
T  16523158 taaagaagttgcccaatttatagggatttatataagaaattcatagggatttacatatgaaattgtaaaaaatttgggccggagcccgagcgagtgtccg 16523257  T
Q  408 gggtcgccgggcc 420  Q
    | |||||||||||    
T  16523258 gcgtcgccgggcc 16523270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 346
Target Start/End: Complemental strand, 34697500 - 34697427
Alignment:
Q  274 tacataagaaattgcaagcaaataataa-aaaatgtaaagaaattgcccaatttataggggtttatataaaaaa 346  Q
    |||||||||||||||||||||||||||| ||||  |||||||||| | |||||||||| | |||||||||||||    
T  34697500 tacataagaaattgcaagcaaataataaaaaaaattaaagaaatttctcaatttatagagatttatataaaaaa 34697427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 252 - 379
Target Start/End: Original strand, 2271196 - 2271318
Alignment:
Q  252 tttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattc 349  Q
    |||||||||||||||||||| ||  ||||||||||||| |||       |||||||| |||||||||| || ||| ||||||||||||||||| ||||||    
T  2271196 tttgcaacacatttatagggggtttacataagaaattgtaag-------taaaaaatctaaagaaattacctaatatataggggtttatataagaaattc 2271288  T
Q  350 atagggatttatacaagaaattgcaaaaaa 379  Q
    |    |||||| | ||||||||||||||||    
T  2271289 agcatgatttacataagaaattgcaaaaaa 2271318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 16591449 - 16591377
Alignment:
Q  310 aagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaaaattt 382  Q
    ||||||||||||||||||||| | ||||||||| |||||| |||  ||||| | |||||||||||||||||||    
T  16591449 aagaaattgcccaatttatagtgatttatataagaaattcttagaaatttacataagaaattgcaaaaaattt 16591377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 253 - 381
Target Start/End: Complemental strand, 2824314 - 2824185
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    |||||||||||||| ||| |  |||||||||||||||||||||||    ||| |   ||| || |||||||||||||| ||| |||||||| ||||| |     
T  2824314 ttgcaacacatttaaaggtgtttacataagaaattgcaagcaaatttgcaaataataaaaaaatttgcccaatttataaggggttatataagaaatttag 2824215  T
Q  352 agggatttatacaagaaattgcaaaaaatt 381  Q
    ||| ||||| | || |||||||||||||||    
T  2824214 aggaatttacataaaaaattgcaaaaaatt 2824185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 2e-75; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 252 - 435
Target Start/End: Complemental strand, 6257542 - 6257359
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  6257542 tttgcaacacatttatagggcgtatataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttgtataagaaattcat 6257443  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||||||||| |||||||||||||||||||||| |||| | ||  ||||||||||||||||||||||||||||| ||||||||||    
T  6257442 agggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccctg 6257359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 252 - 435
Target Start/End: Original strand, 23218481 - 23218664
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23218481 tttgcaacacatttatagggagtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 23218580  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||||||||| ||||||||||||||||| |||| |||| ||||  |||||||||||||| |||||||||||||| ||||||||||    
T  23218581 agggatttacacaagaaattgcaaaaactttggcccggaacccgggcgagtgcccgggatcgccgggccttagaaccgcccctg 23218664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 253 - 431
Target Start/End: Original strand, 38397595 - 38397773
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcata 352  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38397595 ttgcaacacatttataggacgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 38397694  T
Q  353 gggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcc 431  Q
    |||||||| |||||||||||||||||||||| |||| | ||  ||||||||||||||||||||||||||||| ||||||    
T  38397695 gggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcc 38397773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 252 - 436
Target Start/End: Complemental strand, 37169165 - 37168981
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37169165 tttgccacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 37169066  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctga 436  Q
    ||||||||| |||| ||||||||||||||||| |||| | ||  ||| ||||||||||||||||||||||||| |||||||||||    
T  37169065 agggatttacacaaaaaattgcaaaaaatttggcccggagcccgggcaagtgcccggggtcgccgggccttagaaccgcccctga 37168981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 210 - 435
Target Start/End: Complemental strand, 39862660 - 39862436
Alignment:
Q  210 cggcgaagccaggaatattgtaaagcctgggcgnnnnnnnnntttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 309  Q
    ||||| ||||||||||||||||||||||||||          |||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||    
T  39862660 cggcggagccaggaatattgtaaagcctgggc-aaaaaaaaatttgcaacacatttttagggcgtatataagaaattgcaagcaaataataaaaaatcta 39862562  T
Q  310 aagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggg 409  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||| |||| | |   ||||||||||||||    
T  39862561 aagaaattgcccaatttataggggtttatataagaaattcataggaatttacacaagaaattgcaaaaaaattggcccggagctcgggcgagtgcccggg 39862462  T
Q  410 gtcgccgggccttagtaccgcccctg 435  Q
    ||||||||||||||| ||||||||||    
T  39862461 gtcgccgggccttagaaccgcccctg 39862436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 253 - 438
Target Start/End: Complemental strand, 16618701 - 16618516
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcata 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||||||| |||||||||    
T  16618701 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaaaaaattgtccaatttataggagtttatataagaaattcata 16618602  T
Q  353 gggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctgatt 438  Q
    |||||||| ||||||||||| |||||||||| |||| | ||  | ||||||||||||||||||||||||||| |||||||||||||    
T  16618601 gggatttacacaagaaattgtaaaaaatttggcccggagcccggacgagtgcccggggtcgccgggccttagaaccgcccctgatt 16618516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 256 - 434
Target Start/End: Original strand, 15631613 - 15631792
Alignment:
Q  256 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttata-ggggtttatataaaaaattcatagg 354  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||    
T  15631613 caacgcatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggggtttatataagaaattcatagg 15631712  T
Q  355 gatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccct 434  Q
    |||||||||||||||||| |||||||||| || | | ||  ||||||||||||||||||||||||||||| |||||||||    
T  15631713 gatttatacaagaaattgtaaaaaatttggcctggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccct 15631792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 253 - 432
Target Start/End: Complemental strand, 8457096 - 8456915
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||||||| ||||||||||  | ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||| |||||||    
T  8457096 ttgcaacatatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattca 8456997  T
Q  351 tagggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgccc 432  Q
    |||||||||| | ||||||||| ||||||||||  ||| | ||  |||||||||  |||||||||||||| ||| |||||||    
T  8456996 tagggatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcatggggtcgccgggccatagaaccgccc 8456915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 253 - 379
Target Start/End: Original strand, 10081140 - 10081268
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||||||||||||||||| |  |||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||    
T  10081140 ttgcaacacatttataggagtttacataagaaattgtaagcaaataataaaaaaatctaaagaaattgcccaatttataggggtttatataagaaattca 10081239  T
Q  351 tagggatttatacaagaaattgcaaaaaa 379  Q
    |||||||||| | ||||||||| ||||||    
T  10081240 tagggatttacataagaaattgaaaaaaa 10081268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 256 - 386
Target Start/End: Complemental strand, 614522 - 614390
Alignment:
Q  256 caacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataaaaaattcatag 353  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||||||||| ||    
T  614522 caacacatttataggtgtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgccaaatttatagggatttatataaaaaattcagag 614423  T
Q  354 ggatttatacaagaaattgcaaaaaatttgacc 386  Q
    | ||||| | |||||||||||||||| ||||||    
T  614422 gaatttacataagaaattgcaaaaaaattgacc 614390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 252 - 383
Target Start/End: Complemental strand, 36769207 - 36769075
Alignment:
Q  252 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    ||||||||||||||||||||  | ||||| ||||||||||||||||||| |||||| ||||||||||||| |||| |||| ||||||||||| |||||||    
T  36769207 tttgcaacacatttataggggtttacatatgaaattgcaagcaaataatcaaaaatctaaagaaattgcctaattcatagaggtttatataagaaattca 36769108  T
Q  351 tagggatttatacaagaaattgcaaaaaatttg 383  Q
     ||| ||||| | ||||||||||||||||||||    
T  36769107 gaggaatttacataagaaattgcaaaaaatttg 36769075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 253 - 381
Target Start/End: Complemental strand, 25560460 - 25560330
Alignment:
Q  253 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaa-aatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||  |||||||||| ||||| |    
T  25560460 ttgcaacacatttatatgggtttacataagaaattgcaagcaaataataaaataatctaaagaaattgtccaatttatagatgtttatataagaaattta 25560361  T
Q  351 tagggatttatacaagaaattgcaaaaaatt 381  Q
    || ||||||| | ||||||||| ||||||||    
T  25560360 taaggatttacataagaaattgaaaaaaatt 25560330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 252 - 382
Target Start/End: Original strand, 27916133 - 27916266
Alignment:
Q  252 tttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataaaaaatt 348  Q
    |||||||||||||||||||  ||  | |||||||||||||| |||||||||||||| | ||| |||||||| ||||||||||| |||||||||| |||||    
T  27916133 tttgcaacacatttataggaggtttatataagaaattgcaaacaaataataaaaaaatctaatgaaattgctcaatttataggagtttatataagaaatt 27916232  T
Q  349 catagggatttatacaagaaattgcaaaaaattt 382  Q
    || ||| ||||| | |||||||||||||||||||    
T  27916233 cagaggaatttacataagaaattgcaaaaaattt 27916266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 253 - 381
Target Start/End: Original strand, 42119617 - 42119747
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||||||||||||||||||  | |||||||||||| ||| |||||||||||||| | ||||||||||| ||||||||||| ||||||||||| |||||||    
T  42119617 ttgcaacacatttataggggtttacataagaaattacaaacaaataataaaaaaatctaaagaaattgtccaatttatagaggtttatataagaaattca 42119716  T
Q  351 tagggatttatacaagaaattgcaaaaaatt 381  Q
     ||| ||||| | |||||||| |||||||||    
T  42119717 gaggaatttacataagaaattacaaaaaatt 42119747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 274 - 379
Target Start/End: Complemental strand, 9738094 - 9737986
Alignment:
Q  274 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatac--aagaaat 370  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||| ||||||||||||| ||||||||| |||||||||||||||| |||  |||||||    
T  9738094 tacataagaaattgcaagcaaataaacaaaaaatctaaagaaattgtccaatttatagggatttatataagaaattcatagggatttttacataagaaat 9737995  T
Q  371 tgcaaaaaa 379  Q
    || ||||||    
T  9737994 tgaaaaaaa 9737986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 276 - 420
Target Start/End: Complemental strand, 29491521 - 29491378
Alignment:
Q  276 cataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgca 374  Q
    |||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||||||| |||||||| ||||||||||  ||||| | |||||||||||    
T  29491521 cataagaaattgcaagcaaataatcaaaaaatttaaag-aattgtccaatttatagggg-ttatataagaaattcatagaaatttacataagaaattgca 29491424  T
Q  375 aaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggcc 420  Q
    ||| |||||  | ||| ||  | |||||| ||||||||||||||||    
T  29491423 aaagatttgggctgaagcccggacgagtgtccggggtcgccgggcc 29491378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 274 - 383
Target Start/End: Original strand, 6174762 - 6174873
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttata--ggggtttatataaaaaattcatagggatttatacaagaaatt 371  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||  ||||||||||||| ||||||| | | |||||   ||||||||    
T  6174762 tacataggaaattgcaagcaaataataaaaaatataaagaaattgtccaatttataggggggtttatataagaaattcagaagaatttacgtaagaaatt 6174861  T
Q  372 gcaaaaaatttg 383  Q
     |||||||||||    
T  6174862 acaaaaaatttg 6174873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 11856290 - 11856410
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||||||| ||||||||| |  |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| | ||||||||| |||||||    
T  11856290 ttgcaacatatttataggagtttacataagaaattgcaagtaaataatcaaaaaatctaaagaaattgcccaatttatagtgatttatataagaaattca 11856389  T
Q  351 tagggatttatacaagaaatt 371  Q
     || |||||| | ||||||||    
T  11856390 gagcgatttacataagaaatt 11856410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 277 - 379
Target Start/End: Complemental strand, 33271377 - 33271275
Alignment:
Q  277 ataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaa 376  Q
    |||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||  || ||||| | ||||||||| |||    
T  33271377 ataagaaattacaaacaaataataaaaaatataaagaaattgtccaatttatagaggtttatataagaaattcaacggaatttacataagaaattgtaaa 33271278  T
Q  377 aaa 379  Q
    |||    
T  33271277 aaa 33271275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 274 - 383
Target Start/End: Complemental strand, 3341230 - 3341121
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataa-aaaattcatagggatttatacaagaaattg 372  Q
    ||||||| |||||| ||||||||||| |||||  |||||||||| ||||||||||||||| |||||||| |||||||| | | ||||| | |||||||||    
T  3341230 tacataaaaaattgaaagcaaataatcaaaaagctaaagaaatttcccaatttataggggattatataaaaaaattcaga-gaatttacataagaaattg 3341132  T
Q  373 caaaaaatttg 383  Q
    |||||||||||    
T  3341131 caaaaaatttg 3341121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 383
Target Start/End: Complemental strand, 29790328 - 29790220
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgc 373  Q
    |||||||||||||  ||||||||||| |||||  ||||||||||||||||||||||  ||||||||||| ||||||||| | ||||| | |||||||||     
T  29790328 tacataagaaattaaaagcaaataatcaaaaac-taaagaaattgcccaatttataaaggtttatataagaaattcataagaatttacataagaaattgt 29790230  T
Q  374 aaaaaatttg 383  Q
    ||||| ||||    
T  29790229 aaaaattttg 29790220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 379
Target Start/End: Original strand, 10115185 - 10115283
Alignment:
Q  282 aaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaaaa 379  Q
    |||||||||||||||||| ||||||| ||||||||||| | ||||||| ||||||||||||| |||| || ||| ||||| | || |||||||||||||    
T  10115185 aaattgcaagcaaataattaaaaaatctaaagaaattgtctaatttattggggtttatataagaaatccagaggaatttacataaaaaattgcaaaaaa 10115283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 379
Target Start/End: Complemental strand, 10052606 - 10052505
Alignment:
Q  279 aagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaa 377  Q
    |||||||||||||||||||||  |||| | |||||||||| || |||||||||  ||||||||||  | |||| ||||||||| | ||||||||| ||||    
T  10052606 aagaaattgcaagcaaataatctaaaattttaaagaaattacctaatttatagacgtttatataagtagttcagagggatttacataagaaattgtaaaa 10052507  T
Q  378 aa 379  Q
    ||    
T  10052506 aa 10052505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 19322106 - 19322058
Alignment:
Q  300 aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaatt 348  Q
    ||||||| ||||| |||||||||||||||||| |||||||||| |||||    
T  19322106 aaaaaatctaaagtaattgcccaatttataggagtttatataagaaatt 19322058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 33188451 - 33188403
Alignment:
Q  275 acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaa 323  Q
    |||||||||||| ||||||||||||||||||| ||  ||||||||||||    
T  33188451 acataagaaattacaagcaaataataaaaaatttattgaaattgcccaa 33188403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 326
Target Start/End: Original strand, 22903252 - 22903329
Alignment:
Q  253 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaata--ataaaaaatg-taaagaaattgcccaattt 326  Q
    ||||||||||||||||| ||  |||||||||||||||||||||| |  ||||||||   |||||||||||||||||||    
T  22903252 ttgcaacacatttatagaggtttacataagaaattgcaagcaaaaagaataaaaaaaactaaagaaattgcccaattt 22903329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 252 - 435
Target Start/End: Original strand, 1535767 - 1535950
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1535767 tttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 1535866  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||||||||| |||||||||||||||||||||| |||| | ||  ||||||||||| ||||||||||||||||| ||||||||||    
T  1535867 agggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgccccgggtcgccgggccttagaaccgcccctg 1535950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 252 - 435
Target Start/End: Original strand, 49284353 - 49284536
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49284353 tttgcaacacatttatagggcgtacataagaaattgcaaacaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 49284452  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||||||||| |||||||||||||||||||||| |||| | ||  | |||||||||||| |||| ||||||||| |||| |||||    
T  49284453 agggatttacacaagaaattgcaaaaaatttggcccggagcccggacgagtgcccgggttcgctgggccttagaaccgtccctg 49284536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 252 - 438
Target Start/End: Complemental strand, 36012317 - 36012132
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36012317 tttgcaacacatttatatgacatacataaaaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 36012218  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctgatt 438  Q
    ||||||||| |||| ||||||||||||||||| |||||| ||  | ||||||||| ||||||||||||||||| |||||||||||||    
T  36012217 agggatttacacaaaaaattgcaaaaaatttggcccgaagcc-cgacgagtgcccagggtcgccgggccttagaaccgcccctgatt 36012132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 252 - 388
Target Start/End: Original strand, 25954746 - 25954882
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  25954746 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggagtttatataagaaattcat 25954845  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccg 388  Q
    ||| ||||| |||||||||||||||||||||| ||||    
T  25954846 aggaatttacacaagaaattgcaaaaaatttggcccg 25954882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 256 - 388
Target Start/End: Original strand, 34240993 - 34241125
Alignment:
Q  256 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcataggg 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34240993 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcataggg 34241092  T
Q  356 atttatacaagaaattgcaaaaaatttgacccg 388  Q
    || || |||||||||||||||||||||| ||||    
T  34241093 atctacacaagaaattgcaaaaaatttggcccg 34241125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 252 - 438
Target Start/End: Original strand, 35018932 - 35019117
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||| ||||||||    
T  35018932 tttgcaacacatttataaggtgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattacctaatttataagggtttatataagaaattcat 35019031  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctgatt 438  Q
    | ||||||| ||||||||||| |||||||||| |||  | ||  ||||||||||| ||||||||||||||||| |||||||||||||    
T  35019032 a-ggatttacacaagaaattgtaaaaaatttggcccagagcccgggcgagtgcccagggtcgccgggccttagaaccgcccctgatt 35019117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 252 - 435
Target Start/End: Complemental strand, 37801396 - 37801213
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  37801396 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaatttgcccaatttatagggatttatataaaaaattcat 37801297  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||  ||||| |||||||||||||||||||||  |||| | ||  | ||| |||| | | ||| |||||||||| ||||||||||    
T  37801296 agaaatttacacaagaaattgcaaaaaatttagcccggagcccggacgaatgcctgagatcgtcgggccttagaaccgcccctg 37801213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 279 - 436
Target Start/End: Complemental strand, 16338318 - 16338161
Alignment:
Q  279 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaaa 378  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| |||| ||||||||||||    
T  16338318 aagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaaa 16338219  T
Q  379 atttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctga 436  Q
    | ||| |||| || |  ||||| ||||||||||||||||||||||| |||||||||||    
T  16338218 aattggcccggaatccgggcgaatgcccggggtcgccgggccttagaaccgcccctga 16338161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 252 - 371
Target Start/End: Original strand, 52632514 - 52632633
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  52632514 tttgcaacacatttatagggcgtacataagaaattgcaagcaaatattaaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 52632613  T
Q  352 agggatttatacaagaaatt 371  Q
    ||||||||| ||||||||||    
T  52632614 agggatttacacaagaaatt 52632633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 256 - 424
Target Start/End: Complemental strand, 46583669 - 46583511
Alignment:
Q  256 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcataggg 355  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  46583669 caacacatttatatggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcataggg 46583570  T
Q  356 atttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttag 424  Q
    ||||| |          |||||||||||||||| | ||  |||||||||||||||||||||| ||||||    
T  46583569 atttaca----------caaaaaatttgacccggagcccgggcgagtgcccggggtcgccggaccttag 46583511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 253 - 432
Target Start/End: Complemental strand, 17888683 - 17888502
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||| |||||||    
T  17888683 ttgcaacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattca 17888584  T
Q  351 tagggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgccc 432  Q
    |||| ||||| | ||||||||| ||||||||||  ||| | ||  |||||||||||||||||||| |||| ||| |||||||    
T  17888583 taggaatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcccggggtcgcctggccatagaaccgccc 17888502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 253 - 432
Target Start/End: Original strand, 31377385 - 31377565
Alignment:
Q  253 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||| || |||||||| |||||||    
T  31377385 ttgcaacacatttatagcggtttacataagaaattgcaagcaaatagttaaaaaatctaaagaaattgcccaatttatagagggttatataagaaattca 31377484  T
Q  351 tagggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgccc 432  Q
    |||||||||| | ||||||||| ||||||||||  ||| | ||  ||||||||||||||||||||||||| ||| |||||||    
T  31377485 tagggatttacataagaaattg-aaaaaatttgggccggagcccgggcgagtgcccggggtcgccgggccatagaaccgccc 31377565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 253 - 439
Target Start/End: Original strand, 11054448 - 11054638
Alignment:
Q  253 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataat---aaaaaatg-taaagaaattgcccaatttataggggtttatataaaaaat 347  Q
    ||||||||||||||||  ||  |||||||||||||||||||||||||    |||||||  |||||| |||||||||||||||| ||||||||||| ||||    
T  11054448 ttgcaacacatttataaaggtttacataagaaattgcaagcaaataaataaaaaaaatactaaagagattgcccaatttatagaggtttatataagaaat 11054547  T
Q  348 tcatagggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctgattg 439  Q
    ||||||||||||| | |||||||||||||||||| |||| ||  ||  || |||||| ||||||||||||||| ||| ||||||| ||||||    
T  11054548 tcatagggatttacataagaaattgcaaaaaattggaccggagcccg-ggtgagtgctcggggtcgccgggccatagaaccgcccatgattg 11054638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 253 - 384
Target Start/End: Original strand, 54090176 - 54090308
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaa-ttgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||| |||||||  ||||||| ||| |||||||||||||||||||||| |||| ||||||||||||||||| | |||||||||| |||||||     
T  54090176 ttgcaacacatctatagggtttacataaaaaaattgcaagcaaataataaaaaatctaaaaaaattgcccaatttataagagtttatataataaattcag 54090275  T
Q  352 agggatttatacaagaaattgcaaaaaatttga 384  Q
    ||||||||| | ||| |||||||||||||||||    
T  54090276 agggatttacaaaaggaattgcaaaaaatttga 54090308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 325 - 436
Target Start/End: Complemental strand, 36851446 - 36851335
Alignment:
Q  325 ttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttag 424  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| | || |||||||||||||||||||| ||||||||     
T  36851446 ttataggggtttatataataaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccaggcgagtgcccggggtcgctgggccttaa 36851347  T
Q  425 taccgcccctga 436  Q
     |||| ||||||    
T  36851346 aaccgtccctga 36851335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 274 - 383
Target Start/End: Original strand, 20818584 - 20818694
Alignment:
Q  274 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattg 372  Q
    ||||||||||||||||| |||||||| ||||||| |||| |||||| |||||||||||| |||||||||| ||||||||||||||||| | |||||||||    
T  20818584 tacataagaaattgcaaacaaataatcaaaaaatctaaaaaaattgaccaatttataggagtttatataagaaattcatagggatttacaaaagaaattg 20818683  T
Q  373 caaaaaatttg 383  Q
    |||||||||||    
T  20818684 caaaaaatttg 20818694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 252 - 383
Target Start/End: Original strand, 46473988 - 46474121
Alignment:
Q  252 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattc 349  Q
    ||||||||||||||||| ||  | |||||||||||| ||||||||||||| |||||| |||||||||||  ||||||||| |||||||||||||||||||    
T  46473988 tttgcaacacatttataaggatttacataagaaattacaagcaaataatacaaaaatctaaagaaattgtacaatttatatgggtttatataaaaaattc 46474087  T
Q  350 atagggatttatacaagaaattgcaaaaaatttg 383  Q
    | ||| ||||| | ||||||||||||||||||||    
T  46474088 acaggaatttacataagaaattgcaaaaaatttg 46474121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 16338375 - 16338309
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16338375 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 16338309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 379
Target Start/End: Complemental strand, 9742661 - 9742538
Alignment:
Q  258 acacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcataggg 355  Q
    ||||||||||||| |  |||||||||||||||| | ||||||| ||||||| |||||||||||||||||||||||||||| |||||| ||||||| |||     
T  9742661 acacatttataggtgtttacataagaaattgcatgaaaataatcaaaaaatctaaagaaattgcccaatttataggggttaatataagaaattcagagga 9742562  T
Q  356 atttatacaagaaattgcaaaaaa 379  Q
    ||||| | ||||||||| ||||||    
T  9742561 atttacataagaaattgtaaaaaa 9742538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 322682 - 322584
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattc 349  Q
    |||||||||||||| ||| |  |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| ||||||    
T  322682 ttgcaacacatttacaggtgtttacataagaaattgcaagcaaataatcaaaaaatttaaagaaattgtccaatttataggggtttatataagaaattc 322584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 252 - 384
Target Start/End: Original strand, 50328790 - 50328924
Alignment:
Q  252 tttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataaaaaattc 349  Q
    ||||||||||||||||| |||  ||||||| ||||||||||  |||||||||||| | ||||||||||| ||||||||||| ||||||||||| |||||     
T  50328790 tttgcaacacatttataagggtttacataaaaaattgcaagtgaataataaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaatta 50328889  T
Q  350 atagggatttatacaagaaattgcaaaaaatttga 384  Q
    | ||| ||||| | |||||||||||||||| ||||    
T  50328890 agaggaatttacaaaagaaattgcaaaaaaattga 50328924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 283 - 383
Target Start/End: Complemental strand, 10094495 - 10094394
Alignment:
Q  283 aattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaaaatt 381  Q
    ||||||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||| ||||||| ||  ||||| | |||||||| |||||||||    
T  10094495 aattgcaagcaaataatcaaaaaatctaaataaattacccaatttataggggtttatataagaaattcagagaaatttacataagaaattacaaaaaatt 10094396  T
Q  382 tg 383  Q
    ||    
T  10094395 tg 10094394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 252 - 379
Target Start/End: Complemental strand, 12792365 - 12792236
Alignment:
Q  252 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattc 349  Q
    ||||||||||||||||||  |  || |||||||||| ||||||||||||  |||||| ||||| ||||||||||||||||||||||||||||| ||||||    
T  12792365 tttgcaacacatttatagatgtttatataagaaatttcaagcaaataatctaaaaatctaaagtaattgcccaatttataggggtttatataagaaattc 12792266  T
Q  350 atagggatttatacaagaaattgcaaaaaa 379  Q
    | ||  ||||| | |||||||| |||||||    
T  12792265 agagaaatttacataagaaattacaaaaaa 12792236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 300 - 382
Target Start/End: Original strand, 47084056 - 47084138
Alignment:
Q  300 aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaaaattt 382  Q
    ||||||| |||||||||| |||||||||||||||||||||||| ||||||| ||  ||||| | |||||||||||||||||||    
T  47084056 aaaaaatctaaagaaattacccaatttataggggtttatataagaaattcagagaaatttacataagaaattgcaaaaaattt 47084138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 253 - 379
Target Start/End: Complemental strand, 35322837 - 35322709
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    ||||||||| |||||||||  | | ||||||||||||||||||||||| ||||||| |||||||||||  |||||||||| ||||||||||| | |||||    
T  35322837 ttgcaacacttttataggggtttatataagaaattgcaagcaaataatcaaaaaatctaaagaaattgttcaatttatagaggtttatataagagattca 35322738  T
Q  351 tagggatttatacaagaaattgcaaaaaa 379  Q
     ||  ||||||| || ||||| |||||||    
T  35322737 gagaaatttatataaaaaattacaaaaaa 35322709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 379
Target Start/End: Complemental strand, 19124849 - 19124743
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattg 372  Q
    |||||||||||||| ||| ||||||||||||| | |||||||||||  ||||||| ||  |||||||||| ||||||| ||| ||||| | |||||||||    
T  19124849 tacataagaaattgtaagtaaataataaaaaaatttaaagaaattgatcaatttacagatgtttatataagaaattcagaggaatttacataagaaattg 19124750  T
Q  373 caaaaaa 379  Q
    |||||||    
T  19124749 caaaaaa 19124743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 12898192 - 12898243
Alignment:
Q  89 gtttgattttcagacaatagaggcttcaataattattcctcctattccaaaa 140  Q
    |||||||||||| ||||||||||| |||||| ||||||||||||||||||||    
T  12898192 gtttgattttcaaacaatagaggcgtcaatagttattcctcctattccaaaa 12898243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 5780838 - 5780790
Alignment:
Q  300 aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaatt 348  Q
    ||||||| |||||||||||||||||||||| || ||||||||| |||||    
T  5780838 aaaaaatttaaagaaattgcccaatttataaggatttatataagaaatt 5780790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 436
Target Start/End: Original strand, 34241128 - 34241161
Alignment:
Q  403 gcccggggtcgccgggccttagtaccgcccctga 436  Q
    |||||||||||||||||||||| |||||||||||    
T  34241128 gcccggggtcgccgggccttagaaccgcccctga 34241161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 4e-73; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 252 - 435
Target Start/End: Complemental strand, 24694783 - 24694600
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  24694783 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggagtttatataagaaattcat 24694684  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||||||||| |||||||||||||||||||||| |||| | ||  ||||||||||| |||| |||||||||||| ||||||||||    
T  24694683 agggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccagggttgccgggccttagaaccgcccctg 24694600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 220 - 423
Target Start/End: Complemental strand, 14309962 - 14309760
Alignment:
Q  220 aggaatattgtaaagcctgggcgnnnnnnnnntttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 319  Q
    ||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14309962 aggaatattgtaaagcctgggcaaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 14309863  T
Q  320 ccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggc 419  Q
    ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||  |||||||| | |||||||||||||    
T  14309862 ccaatttatagggatttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccgaaacc-gggcgagtgtctggggtcgccgggc 14309764  T
Q  420 ctta 423  Q
    ||||    
T  14309763 ctta 14309760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 253 - 435
Target Start/End: Complemental strand, 9231985 - 9231803
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcata 352  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9231985 ttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 9231886  T
Q  353 gggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    | |||||| |||||||||||||||||| ||| |||| | ||  ||||||||||||||||||||| ||||||| ||||||||||    
T  9231885 gagatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggtcgccgagccttagaaccgcccctg 9231803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 252 - 437
Target Start/End: Original strand, 13627536 - 13627721
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  13627536 tttgcaacatatttataggacgtacataagaaagtacaagcaaataataaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcat 13627635  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctgat 437  Q
    ||||||||| |||||||||||||||||||||| |||| | ||  | |||||||  |||||||||||||||||| ||||||||||||    
T  13627636 agggatttacacaagaaattgcaaaaaatttggcccggagcccggacgagtgcttggggtcgccgggccttagaaccgcccctgat 13627721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 282 - 404
Target Start/End: Complemental strand, 1728035 - 1727913
Alignment:
Q  282 aaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaaaatt 381  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  1728035 aaattgcaaggaaataataaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatt 1727936  T
Q  382 tgacccgaaacctaggcgagtgc 404  Q
    || |||| | ||| |||||||||    
T  1727935 tggcccggagcctgggcgagtgc 1727913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 258 - 384
Target Start/End: Complemental strand, 13103246 - 13103118
Alignment:
Q  258 acacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcataggg 355  Q
    ||||||||||||| |  ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||  ||||||||||| ||||||| |||     
T  13103246 acacatttataggtgtttacattagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttataaaggtttatataagaaattcagagga 13103147  T
Q  356 atttatacaagaaattgcaaaaaatttga 384  Q
    ||||| | || ||||||||||||||||||    
T  13103146 atttacataaaaaattgcaaaaaatttga 13103118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 253 - 379
Target Start/End: Complemental strand, 28750783 - 28750655
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||||||||||||||| | |  ||||||||||||| |||||||||||| ||||||  ||||||||||||||||||||||||||||||||||| |||||||    
T  28750783 ttgcaacacatttataagagtttacataagaaattacaagcaaataatcaaaaaaattaaagaaattgcccaatttataggggtttatataagaaattca 28750684  T
Q  351 tagggatttatacaagaaattgcaaaaaa 379  Q
     | | ||||| | ||||||||||||||||    
T  28750683 gaagaatttacataagaaattgcaaaaaa 28750655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 252 - 435
Target Start/End: Original strand, 11084606 - 11084768
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||           ||||||||||||| ||||||||    
T  11084606 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaa---------aaattg-----------ggggtttatataagaaattcat 11084685  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||| ||||| |||||||||||||||||| ||| | || ||||  ||||| ||||||||||| ||||||||||| ||||||||||    
T  11084686 aggaatttacacaagaaattgcaaaaaaattggctcggaacccgggcga-tgcccggggtcaccgggccttagaaccgcccctg 11084768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 252 - 383
Target Start/End: Original strand, 27863694 - 27863827
Alignment:
Q  252 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    ||||||||||||||||||  |  ||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| |||||||||||| |||||||    
T  27863694 tttgcaacacatttatagatgtttacataagaaattgcaaacaaataataaaaaatctaaagaaattgtccaatttataagggtttatataagaaattca 27863793  T
Q  351 tagggatttatacaag-aaattgcaaaaaatttg 383  Q
     ||  ||||| | ||| |||||||||||| ||||    
T  27863794 gagaaatttacataagaaaattgcaaaaagtttg 27863827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 34103703 - 34103808
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgc 373  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |||||||||||| ||||||| ||| ||||| | || ||||| |    
T  34103703 tacataagaaattgcaaacaaataataaaaaatctaaagaaatttcccaatttatacgggtttatataagaaattcagaggaatttacataataaattac 34103802  T
Q  374 aaaaaa 379  Q
    ||||||    
T  34103803 aaaaaa 34103808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 274 - 350
Target Start/End: Original strand, 11212689 - 11212765
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    ||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||| |||||| ||||||||||    
T  11212689 tacataagaaattacaagcaaataattaaaaatctaaagaaattgcccaatttatagggatttatagaaaaaattca 11212765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 253 - 350
Target Start/End: Original strand, 11279536 - 11279634
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    ||||||||||||||||| |  | |||||||||||||||||||||||||||||||| |||||||||| || |||||||| |  |||||||||||||||||    
T  11279536 ttgcaacacatttatagagatttacataagaaattgcaagcaaataataaaaaatctaaagaaattaccaaatttataagaatttatataaaaaattca 11279634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 383
Target Start/End: Complemental strand, 24497646 - 24497575
Alignment:
Q  312 gaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaaaatttg 383  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||||| |||| |||||||||||||||||    
T  24497646 gaaattgcccaatttataggggtttatataagaaattcagaggaatttacacaaaaaattgcaaaaaatttg 24497575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 8412757 - 8412717
Alignment:
Q  308 taaagaaattgcccaatttataggggtttatataaaaaatt 348  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  8412757 taaagaaattgcccaatttataggcgtttatataagaaatt 8412717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 24500830 - 24500767
Alignment:
Q  256 caacacatttata-gggcgtacataagaaattgcaagcaaataataa-aaaatgtaaagaaatt 317  Q
    ||||||||||||| |||  |||||| ||||||||||||||||||||| ||||| ||||||||||    
T  24500830 caacacatttataagggtttacatatgaaattgcaagcaaataataaaaaaatctaaagaaatt 24500767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 2e-72; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 252 - 435
Target Start/End: Complemental strand, 42517430 - 42517243
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggg----gtttatataaaaaat 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||| ||||    
T  42517430 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttgtttatataagaaat 42517331  T
Q  348 tcatagggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||||||||||||| |||||||||||||||||||||| |||| | ||  ||||||||||||||||||||||||||||| ||||||||||    
T  42517330 tcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccctg 42517243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 252 - 435
Target Start/End: Complemental strand, 7742911 - 7742728
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7742911 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 7742812  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    | ||||||| |||||||||||||||||| ||  | || | ||  ||||||||||||||||||||||||||||| ||||||||||    
T  7742811 aaggatttacacaagaaattgcaaaaaaatttgctcggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccctg 7742728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 252 - 435
Target Start/End: Original strand, 49902464 - 49902647
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  49902464 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgccctatttataggggtttatataagaaattcat 49902563  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||||||||| |||||||||||||||||||||| |||| | ||   |||||||||||| |||||||| |||||| ||||||||||    
T  49902564 agggatttacacaagaaattgcaaaaaatttggcccggagcccgagcgagtgcccggagtcgccggaccttagaaccgcccctg 49902647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 256 - 435
Target Start/End: Original strand, 5974988 - 5975167
Alignment:
Q  256 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcataggg 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||    
T  5974988 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcttaggg 5975087  T
Q  356 atttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||||| ||||||||||| |||||||||| |||| | ||  ||||||||||||||||||||||||||||| |||| |||||    
T  5975088 atttacacaagaaattgaaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgtccctg 5975167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 252 - 435
Target Start/End: Complemental strand, 48392538 - 48392355
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||    
T  48392538 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaatgaaattgcccaatttatagggatttatataagaaattcat 48392439  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||||||||| |||||||||||||||||| ||| | || | ||  |||||||||||| |||||||||||||||| ||||||||||    
T  48392438 agggatttacacaagaaattgcaaaaaaattggctcggagcccgggcgagtgcccgaggtcgccgggccttagaaccgcccctg 48392355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 252 - 435
Target Start/End: Original strand, 3346782 - 3346965
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  3346782 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcat 3346881  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||||||||| |||| ||||||||||||||||| |||||| |   |||||||||||||| |||| || |||||| | ||||||||    
T  3346882 agggatttacacaacaaattgcaaaaaatttggcccgaagctcgggcgagtgcccgggatcgctggaccttagaatcgcccctg 3346965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 252 - 435
Target Start/End: Complemental strand, 10156148 - 10155965
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||  |||||||||| ||||||||    
T  10156148 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaagaaattgtccaatttatagaagtttatataagaaattcat 10156049  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    ||| ||||| |||||||||||||||||| ||| |||| | ||  ||||||||||||||||||||||||||||| ||||||||||    
T  10156048 aggaatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccctg 10155965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 252 - 435
Target Start/End: Original strand, 47022698 - 47022881
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||||||| |||||||||| ||||||||    
T  47022698 tttgcaacatatttatagggcgtacataagaaattacaagtaaataataaaaaatataaagaaattgcctaatttataggagtttatataagaaattcat 47022797  T
Q  352 agggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctg 435  Q
    || |||||| |||||||||||||||||||||| |||| | ||  ||||||||||||||||||||||||||||| ||||||||||    
T  47022798 agagatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccctg 47022881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 252 - 371
Target Start/End: Complemental strand, 29149680 - 29149561
Alignment:
Q  252 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcat 351  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  29149680 tttgcaacacatgtatagggcgtacataagaaattgcaagcaaataataaaaaacgtaaagaaattgcccaatttataggggtttatataagaaattcat 29149581  T
Q  352 agggatttatacaagaaatt 371  Q
    ||||||||| |||| |||||    
T  29149580 agggatttacacaaaaaatt 29149561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 253 - 439
Target Start/End: Original strand, 23908282 - 23908458
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcata 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| ||||||||| |||||||||    
T  23908282 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaacataaagaaattgtccaatttatagggatttatataagaaattcata 23908381  T
Q  353 gggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctgattg 439  Q
    || ||||| |          ||||||||||| |||| | ||  |||||||||| |||||||||||||||||| ||||||||||||||    
T  23908382 ggaatttaca----------caaaaaatttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccctgattg 23908458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 256 - 437
Target Start/End: Original strand, 38859849 - 38860032
Alignment:
Q  256 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataaaaaattcatag 353  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| ||||||||||    
T  38859849 caacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaaaaaattgcccaatttataggggtttatataagaaattcatag 38859948  T
Q  354 ggatttatacaagaaattgcaaaaaatttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctgat 437  Q
    | ||||| | ||||||||| ||||||||||  ||| | ||  ||||||||||||||||||||||||| ||| ||||||| ||||    
T  38859949 gaatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcccggggtcgccgggccatagaaccgcccatgat 38860032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 253 - 383
Target Start/End: Complemental strand, 10907781 - 10907649
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||| ||||||| ||||||||||| |  |||||||||||||||||||| |||||||    
T  10907781 ttgcaacacatttataggtgtctacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgtctgatttataggggtttatataagaaattca 10907682  T
Q  351 tagggatttatacaagaaattgcaaaaaatttg 383  Q
     ||| ||||| | ||||||||||||||||||||    
T  10907681 gaggaatttacataagaaattgcaaaaaatttg 10907649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 253 - 383
Target Start/End: Original strand, 42456566 - 42456699
Alignment:
Q  253 ttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaatgt-aaagaaattgcccaatttataggggtttatataaaaaattc 349  Q
    |||||||||||||||||||  |  ||||||||||||||||| | ||||||||   | | |||||||||||||||||||||||||||||||||| ||||||    
T  42456566 ttgcaacacatttataggggatttacataagaaattgcaagtagataataaatttttttaaagaaattgcccaatttataggggtttatataagaaattc 42456665  T
Q  350 atagggatttatacaagaaattgcaaaaaatttg 383  Q
    ||||| ||||| | ||||||| ||||||||||||    
T  42456666 ataggaatttacataagaaatagcaaaaaatttg 42456699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 252 - 379
Target Start/End: Original strand, 26835332 - 26835461
Alignment:
Q  252 tttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattc 349  Q
    ||||||||||||||||| |||  ||||| |||||||||||||||||||| ||||||| |||| ||||||  ||||||||||| |||||||||| ||||||    
T  26835332 tttgcaacacatttatatgggtttacatgagaaattgcaagcaaataatcaaaaaatctaaaaaaattgttcaatttataggagtttatataagaaattc 26835431  T
Q  350 atagggatttatacaagaaattgcaaaaaa 379  Q
    ||| | ||||| | || |||||||||||||    
T  26835432 atatgaatttacataataaattgcaaaaaa 26835461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 379
Target Start/End: Original strand, 5558334 - 5558431
Alignment:
Q  281 gaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaaaa 379  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| ||||||  | || |||| | ||||||||||||||||    
T  5558334 gaaattgcaagcaaataatcaaaaatctaaagaaattgtccaatttataggggtttatataagaaattcggaagg-tttacataagaaattgcaaaaaa 5558431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 274 - 383
Target Start/End: Original strand, 30745361 - 30745471
Alignment:
Q  274 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattg 372  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||||| |||||| || ||||||| ||  ||||| | || ||||||    
T  30745361 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaaaaattg 30745460  T
Q  373 caaaaaatttg 383  Q
    ||||| |||||    
T  30745461 caaaatatttg 30745471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 274 - 383
Target Start/End: Original strand, 30766812 - 30766922
Alignment:
Q  274 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattg 372  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||||| |||||| || ||||||| ||  ||||| | || ||||||    
T  30766812 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaaaaattg 30766911  T
Q  373 caaaaaatttg 383  Q
    ||||| |||||    
T  30766912 caaaatatttg 30766922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 274 - 380
Target Start/End: Complemental strand, 30252856 - 30252748
Alignment:
Q  274 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatat-aaaaaattcatagggatttatacaagaaatt 371  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||| | ||||||||||| ||||||| |||||||||| |   ||||||| || |||||    
T  30252856 tacataagaaattgcaagcaaataatcaaaaaatctaaagaagttgtctaatttatagggatttatataaaaaaattcagaaaaatttatataaaaaatt 30252757  T
Q  372 gcaaaaaat 380  Q
    |||||||||    
T  30252756 gcaaaaaat 30252748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 274 - 377
Target Start/End: Original strand, 13131914 - 13132017
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgc 373  Q
    |||||||||||||||||| | ||||  |||||  ||||||||||| ||||||||||| | ||||||||||||||| | ||| ||||| | |||||||| |    
T  13131914 tacataagaaattgcaaggagataagtaaaaagctaaagaaattgtccaatttatagtgatttatataaaaaatttagaggaatttacataagaaattac 13132013  T
Q  374 aaaa 377  Q
    ||||    
T  13132014 aaaa 13132017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 360
Target Start/End: Complemental strand, 44107522 - 44107412
Alignment:
Q  252 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattc 349  Q
    ||||||||||||||||| ||  | ||||||||||||||||| ||||||| ||||||| | ||||||||    ||||||||||||||||||||||||| ||    
T  44107522 tttgcaacacatttataaggttttacataagaaattgcaagtaaataatcaaaaaatctgaagaaattaattaatttataggggtttatataaaaaaatc 44107423  T
Q  350 atagggattta 360  Q
    | ||| |||||    
T  44107422 agaggaattta 44107412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 350
Target Start/End: Original strand, 45968685 - 45968761
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||||||||||||||||| ||||||| |||||| || | |||||| |||||||||| | | ||||||||||||||||    
T  45968685 tacataagaaattgcaagtaaataatcaaaaatctataaaaattgtccaatttataagagattatataaaaaattca 45968761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 378
Target Start/End: Original strand, 14796871 - 14796998
Alignment:
Q  253 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||||| ||||||||| |||  |||||||||||||||||||||||| |  |||||| ||||| ||| ||| |||||||| | || ||||||| |||||||    
T  14796871 ttgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattca 14796970  T
Q  351 tagggatttatacaagaaattgcaaaaa 378  Q
     ||| ||||| | || ||||||||||||    
T  14796971 gaggaatttacataaaaaattgcaaaaa 14796998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 378
Target Start/End: Original strand, 14805745 - 14805872
Alignment:
Q  253 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattca 350  Q
    |||||| ||||||||| |||  |||||||||||||||||||||||| |  |||||| ||||| ||| ||| |||||||| | || ||||||| |||||||    
T  14805745 ttgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattca 14805844  T
Q  351 tagggatttatacaagaaattgcaaaaa 378  Q
     ||| ||||| | || ||||||||||||    
T  14805845 gaggaatttacataaaaaattgcaaaaa 14805872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 378
Target Start/End: Original strand, 37189697 - 37189762
Alignment:
Q  313 aaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaaa 378  Q
    |||||| ||||||||||| | ||||||||| |||||||||| |||||| | |||||||||||||||    
T  37189697 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgcaaaaa 37189762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 278 - 379
Target Start/End: Complemental strand, 26511739 - 26511639
Alignment:
Q  278 taagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaa 377  Q
    |||||||||| ||| ||||||| |||||| ||||||||||   ||||||| |||  ||||||||| |||||||  ||| |||| | ||||||||||||||    
T  26511739 taagaaattgtaagtaaataatcaaaaatttaaagaaattattcaatttacaggaatttatataagaaattcaggggg-tttacataagaaattgcaaaa 26511641  T
Q  378 aa 379  Q
    ||    
T  26511640 aa 26511639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 8430551 - 8430508
Alignment:
Q  275 acataagaaattgcaagcaaataataa-aaaatgtaaagaaatt 317  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||    
T  8430551 acataagaaattgcaagcaaataataaaaaaatttaaagaaatt 8430508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 279 - 436
Target Start/End: Original strand, 54542 - 54699
Alignment:
Q  279 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaaa 378  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| |||| ||||||||||||    
T  54542 aagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaaa 54641  T
Q  379 atttgacccgaaacctaggcgagtgcccggggtcgccgggccttagtaccgcccctga 436  Q
    | ||| |||| || |  ||||| ||||||||||||||||||||||| |||||||||||    
T  54642 aattggcccggaatccgggcgaatgcccggggtcgccgggccttagaaccgcccctga 54699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 54485 - 54551
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54485 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 54551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 274 - 379
Target Start/End: Complemental strand, 34563 - 34457
Alignment:
Q  274 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattg 372  Q
    |||||||||||||| ||||||||||| ||||||| |||||||| || ||||||||||| | |||||||||| |||||| ||||||||| | |||||||||    
T  34563 tacataagaaattgtaagcaaataatcaaaaaatctaaagaaactgtccaatttatagagatttatataaagaattcagagggatttacataagaaattg 34464  T
Q  373 caaaaaa 379  Q
    |||||||    
T  34463 caaaaaa 34457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 10293 - 10196
Alignment:
Q  90 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggctt 187  Q
    ||||||||||||||||| | ||||||||||  ||||| ||||||| |||||||||| |||||  |||| |||||||||||||||||||||| ||||||    
T  10293 tttgattttcagacaatcggggcttcaatatctattcttcctattacaaaatctgacttgtgtggtttcatattttgcatcattctttctgagggctt 10196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 379
Target Start/End: Complemental strand, 20915 - 20836
Alignment:
Q  300 aaaaaatgtaaagaaattgcccaatttataggggtttatataaaaaattcatagggatttatacaagaaattgcaaaaaa 379  Q
    ||||||| |||| |||||| ||||||||||| | ||||||||| ||||||| ||| ||||| | ||||||||||||||||    
T  20915 aaaaaatctaaaaaaattgtccaatttatagagctttatataagaaattcagaggaatttacataagaaattgcaaaaaa 20836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 303 - 348
Target Start/End: Original strand, 85547 - 85592
Alignment:
Q  303 aaatgtaaagaaattgcccaatttataggggtttatataaaaaatt 348  Q
    |||||||||||||||| ||||||||||||| ||| |||||||||||    
T  85547 aaatgtaaagaaattgtccaatttatagggatttttataaaaaatt 85592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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