View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11489_low_2 (Length: 428)

Name: NF11489_low_2
Description: NF11489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11489_low_2
NF11489_low_2
[»] chr3 (22 HSPs)
chr3 (2-418)||(23467140-23467556)
chr3 (109-286)||(23427143-23427320)
chr3 (94-309)||(23400736-23400951)
chr3 (126-309)||(23452689-23452872)
chr3 (94-309)||(23470907-23471122)
chr3 (94-309)||(23438407-23438622)
chr3 (100-309)||(23350472-23350681)
chr3 (100-309)||(23461797-23462003)
chr3 (105-309)||(23403193-23403394)
chr3 (340-409)||(23427050-23427118)
chr3 (100-286)||(23382057-23382240)
chr3 (2-41)||(5391523-5391562)
chr3 (2-41)||(20382585-20382624)
chr3 (2-41)||(40845940-40845979)
chr3 (2-40)||(32352913-32352951)
chr3 (2-41)||(13856165-13856204)
chr3 (2-41)||(19649395-19649434)
chr3 (2-41)||(21853263-21853302)
chr3 (61-93)||(21853344-21853376)
chr3 (239-307)||(23433899-23433967)
chr3 (9-41)||(44994991-44995023)
chr3 (2-30)||(54546970-54546998)
[»] scaffold0201 (1 HSPs)
scaffold0201 (100-309)||(9969-10175)
[»] chr8 (12 HSPs)
chr8 (2-41)||(35806860-35806899)
chr8 (2-41)||(21525424-21525463)
chr8 (2-41)||(22324662-22324701)
chr8 (2-41)||(26021462-26021501)
chr8 (2-41)||(42072494-42072533)
chr8 (2-40)||(24065339-24065377)
chr8 (2-41)||(16523172-16523211)
chr8 (2-41)||(16818996-16819035)
chr8 (2-33)||(33934400-33934431)
chr8 (2-41)||(42013938-42013977)
chr8 (61-94)||(42014019-42014052)
chr8 (61-93)||(35806941-35806973)
[»] chr6 (7 HSPs)
chr6 (2-41)||(9231877-9231916)
chr6 (2-41)||(1727956-1727995)
chr6 (2-41)||(13627606-13627645)
chr6 (2-41)||(14309821-14309860)
chr6 (2-41)||(24694674-24694713)
chr6 (2-30)||(24497608-24497636)
chr6 (2-30)||(28750684-28750712)
[»] chr4 (15 HSPs)
chr4 (51-94)||(34241118-34241161)
chr4 (2-41)||(1535837-1535876)
chr4 (51-90)||(25954875-25954914)
chr4 (2-41)||(36012208-36012247)
chr4 (2-41)||(46583564-46583603)
chr4 (2-41)||(49284423-49284462)
chr4 (2-41)||(10094416-10094455)
chr4 (2-41)||(11054522-11054561)
chr4 (2-41)||(12792254-12792293)
chr4 (2-41)||(20818633-20818672)
chr4 (2-33)||(34241059-34241090)
chr4 (2-41)||(47084078-47084117)
chr4 (2-41)||(52632584-52632623)
chr4 (61-94)||(16338161-16338194)
chr4 (5-41)||(36851410-36851446)
[»] chr7 (11 HSPs)
chr7 (2-41)||(10576739-10576778)
chr7 (2-41)||(34259584-34259623)
chr7 (2-41)||(34707182-34707221)
chr7 (2-41)||(44164766-44164805)
chr7 (51-93)||(24320400-24320442)
chr7 (2-33)||(19334591-19334622)
chr7 (2-41)||(29238166-29238205)
chr7 (2-33)||(29555970-29556001)
chr7 (2-33)||(32876561-32876592)
chr7 (2-41)||(33057680-33057719)
chr7 (61-93)||(44164692-44164724)
[»] chr5 (14 HSPs)
chr5 (2-41)||(10081211-10081250)
chr5 (2-41)||(23218551-23218590)
chr5 (2-41)||(37169056-37169095)
chr5 (2-41)||(38397664-38397703)
chr5 (61-93)||(23218632-23218664)
chr5 (2-41)||(6257433-6257472)
chr5 (2-41)||(8456986-8457025)
chr5 (2-41)||(16618593-16618632)
chr5 (2-33)||(39862518-39862549)
chr5 (61-95)||(16618517-16618551)
chr5 (2-39)||(9738008-9738045)
chr5 (61-94)||(37168981-37169014)
chr5 (61-93)||(6257359-6257391)
chr5 (61-93)||(39862436-39862468)
[»] chr2 (10 HSPs)
chr2 (2-41)||(14186461-14186500)
chr2 (2-41)||(14942067-14942106)
chr2 (2-41)||(29846508-29846547)
chr2 (2-41)||(42769781-42769820)
chr2 (2-41)||(2888107-2888146)
chr2 (2-41)||(6318481-6318520)
chr2 (2-33)||(19181614-19181645)
chr2 (2-40)||(1387312-1387350)
chr2 (61-93)||(40277237-40277269)
chr2 (61-93)||(42769707-42769739)
[»] chr1 (14 HSPs)
chr1 (2-41)||(3346852-3346891)
chr1 (2-41)||(29149571-29149610)
chr1 (2-41)||(47022768-47022807)
chr1 (3-41)||(49902535-49902573)
chr1 (2-41)||(5975054-5975093)
chr1 (2-41)||(7742802-7742841)
chr1 (2-41)||(37189706-37189745)
chr1 (2-33)||(38859917-38859948)
chr1 (2-33)||(42456638-42456669)
chr1 (2-41)||(48392429-48392468)
chr1 (61-93)||(7742728-7742760)
chr1 (61-93)||(10155965-10155997)
chr1 (61-93)||(42517243-42517275)
chr1 (61-93)||(47022849-47022881)
[»] scaffold0079 (1 HSPs)
scaffold0079 (61-94)||(54666-54699)


Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 2 - 418
Target Start/End: Complemental strand, 23467556 - 23467140
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttacnnnnnnnnnttggcccggagcccgggatcgccgggccttagaaccgcccctgatgccgtt 101  Q
    |||||||||||||||||||||||||||||||| |||||||         ||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  23467556 aatttataggggtttatataagaaattcatagggatttacacaaaaaatttggcccggagccgggggtcgccgggccttagaaccgcccctgatgccgtt 23467457  T
Q  102 cactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctggc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23467456 cactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctggc 23467357  T
Q  202 atgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaacaga 301  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23467356 atgttcacaacagacaagatagtgaaatttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaacaga 23467257  T
Q  302 ggggataagtgtgttgtatctttaggaatttaattaatcaatgaaaacacatgttttaattttgtagctagtttcttttcatcttctccttcttagtctt 401  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23467256 ggggataagtgtgttgtatctttaggaatgtaattaatcaatgaaaacatatgttttaattttgtagctagtttcttttcatcttctccttcttagtctt 23467157  T
Q  402 agagcccctatgcttct 418  Q
    |||||||| ||||||||    
T  23467156 agagccccaatgcttct 23467140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 109 - 286
Target Start/End: Complemental strand, 23427320 - 23427143
Alignment:
Q  109 ttatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctggcatgttca 208  Q
    |||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23427320 ttatttttgaaaacggaaaagaagccgacagacgttgtagtagtgacagttatcttgggacattcatttctgatcatgtactggtatgctggcatgttca 23427221  T
Q  209 caacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaatt 286  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23427220 caacagacaatatagtgaaagttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaatt 23427143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 94 - 309
Target Start/End: Complemental strand, 23400951 - 23400736
Alignment:
Q  94 atgccgttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggt 193  Q
    |||||||||||||||||||||||||||| ||  ||||||| |||| |||| |||||||||||||||||||||||| ||||||| ||||| ||||| ||||    
T  23400951 atgccgttcactgtattatctttgaaaatggctaagaagctgacagacgtcgtattagtgacagttatcttgggatattcattactgatcatgtattggt 23400852  T
Q  194 atgctggcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgt 293  Q
    ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| ||||     
T  23400851 atgctagcatgttcacaacagacaagatagtggaagttatgatttttgcaacttatcatttcagtttctacttcaaggtcacaagaaactattgcggtgg 23400752  T
Q  294 tcaacagaggggataa 309  Q
    ||||| ||||||||||    
T  23400751 tcaacggaggggataa 23400736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 126 - 309
Target Start/End: Complemental strand, 23452872 - 23452689
Alignment:
Q  126 aaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctggcatgttcacaacagacaagatagtg 225  Q
    ||||||| ||||| | || ||||||||  ||  |||||||||||||| ||||| ||| ||||| || |||||||| ||| | |||||| |||||| | ||    
T  23452872 aaagaagtcgacagatgtcgtattagttgcaaatatcttgggacattaatttcagatcatgtattgatatgctggaatggttacaacaaacaagaaactg 23452773  T
Q  226 aaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaacagaggggataa 309  Q
     || | |||| ||||||||| |||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  23452772 gaagtcatgacttttgcaacctatcatttcagttcctacttcaaggtcaaaaggaacaattgtggtggtcaacagaggggataa 23452689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 94 - 309
Target Start/End: Complemental strand, 23471122 - 23470907
Alignment:
Q  94 atgccgttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggt 193  Q
    ||||| |||| |||||||| ||||||  ||||||||||| | ||| |||| | |||||| ||| |||| |||||||||| ||||| ||| ||| | || |    
T  23471122 atgcccttcattgtattatttttgaacgcggaaaagaagtcaacagacgtcgcattagtcacaattattttgggacattaatttcagatcatgcattgat 23471023  T
Q  194 atgctggcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgt 293  Q
    ||| ||||||| | ||||||||||||| | || || ||||||| ||||||||||||||||||||||  |||||||||||| ||| ||| ||||  ||||     
T  23471022 atgttggcatggttacaacagacaagaaaatggaagttatgatatttgcaacttatcatttcaattcatacttcaaggtcccaatgaagaattacggtgg 23470923  T
Q  294 tcaacagaggggataa 309  Q
    ||||  ||||||||||    
T  23470922 tcaaaggaggggataa 23470907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 94 - 309
Target Start/End: Complemental strand, 23438622 - 23438407
Alignment:
Q  94 atgccgttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggt 193  Q
    ||||| |||| ||||| ||||| |||  ||||||||||| ||||| |  | |||||||| ||| |||||| |||||||| ||||| ||| ||||| || |    
T  23438622 atgcccttcattgtatcatcttggaatgcggaaaagaagtcgacagatctcgtattagtcacaattatctcgggacattaatttcagatcatgtattgat 23438523  T
Q  194 atgctggcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgt 293  Q
    ||||||||||| | ||||||||||||| | || || | ||||| ||| ||||||||||||||||||  ||| ||||| || ||| ||| ||||||||||     
T  23438522 atgctggcatggttacaacagacaagaaaatggaagtaatgatatttacaacttatcatttcaattcatacatcaagatcccaatgaagaattgtggtgg 23438423  T
Q  294 tcaacagaggggataa 309  Q
    ||||  ||||||||||    
T  23438422 tcaaaggaggggataa 23438407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 100 - 309
Target Start/End: Complemental strand, 23350681 - 23350472
Alignment:
Q  100 ttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctg 199  Q
    |||| ||| ||||||||||| | || ||||||| ||||| | || ||||||||  || |||||||||| |||| ||||  ||| | ||| || |||| ||    
T  23350681 ttcattgtgttatctttgaacatggcaaagaagtcgacagatgtcgtattagttgcaattatcttggggcattaattttagatcacgtattgatatgttg 23350582  T
Q  200 gcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaaca 299  Q
    ||||  | ||| ||  ||||| |||| || |||||| ||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| || ||     
T  23350581 gcatcgttacagcattcaagaaagtggaagttatgacttttgcaacctatcatttcaatttatacttcaaggtcacaaggaaaaattgtggtggtcgact 23350482  T
Q  300 gaggggataa 309  Q
    ||||||||||    
T  23350481 gaggggataa 23350472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 100 - 309
Target Start/End: Complemental strand, 23462003 - 23461797
Alignment:
Q  100 ttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctg 199  Q
    |||| |||||||||||||||  ||||||||||| ||||| |||| | |||||   || |||||| |||||||| ||||| ||| ||||| || |  | ||    
T  23462003 ttcattgtattatctttgaatgcggaaaagaagtcgacagacgtcgcattagattcaattatctcgggacattaatttcagatcatgtattgatgcgttg 23461904  T
Q  200 gcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaaca 299  Q
    ||||| | |||||| |||||| |||| || |||||||| |   |||||||||||| ||||  |||||||||||| ||| ||| |||||||||| ||||||    
T  23461903 gcatggttacaacatacaagaaagtggaagttatgattgt---aacttatcatttaaattcatacttcaaggtcccaatgaagaattgtggtggtcaaca 23461807  T
Q  300 gaggggataa 309  Q
    ||||||||||    
T  23461806 gaggggataa 23461797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 105 - 309
Target Start/End: Complemental strand, 23403394 - 23403193
Alignment:
Q  105 tgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctggcatg 204  Q
    ||||| |||||||||   |||||||||| ||||| |||| | ||||||  || |||||| |||||||| ||||| ||| ||||| || | || |||||||    
T  23403394 tgtatcatctttgaatgtggaaaagaagtcgacagacgtcgcattagtctcaattatctcgggacattaatttcagatcatgtattgatgtgttggcatg 23403295  T
Q  205 ttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaacagaggg 304  Q
     | |||||| |||||| |||| || |||||||| |   |||||||||||||||||  |||||||||||| ||| ||| || ||||||| |||||||||||    
T  23403294 gttacaacatacaagaaagtggaagttatgattgt---aacttatcatttcaattcatacttcaaggtcccaatgaagaactgtggtggtcaacagaggg 23403198  T
Q  305 gataa 309  Q
    |||||    
T  23403197 gataa 23403193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 340 - 409
Target Start/End: Complemental strand, 23427118 - 23427050
Alignment:
Q  340 caatgaaaacacatgttttaattttgtagctagtttcttttcatcttctccttcttagtcttagagcccc 409  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  23427118 caatgaaaacacatgttttaattttgtagctag-ttcctttcatcttctccttcttagtcttagagcccc 23427050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 100 - 286
Target Start/End: Complemental strand, 23382240 - 23382057
Alignment:
Q  100 ttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctg 199  Q
    |||| |||||||||||||||  ||||||||||| ||||| |||| | ||||||  || |||||| |||||||| ||||| ||| ||||| || |||| ||    
T  23382240 ttcattgtattatctttgaatgcggaaaagaagtcgacagacgtcgcattagtctcaattatctcgggacattaatttcagatcatgtattgatatggtg 23382141  T
Q  200 gcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaatt 286  Q
    ||||| | |||||| |||||| |||| || ||||||   ||| |||||||||||||||||  |||||||||||| ||| ||| ||||    
T  23382140 gcatggttacaacatacaagaaagtggaagttatga---ttgtaacttatcatttcaattcatacttcaaggtcccaatgaagaatt 23382057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 5391523 - 5391562
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  5391523 aatttataggggtttatataagaaattcatagggatttac 5391562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 20382585 - 20382624
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  20382585 aatttataggggtttatataagaaattcatagggatttac 20382624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 40845979 - 40845940
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  40845979 aatttataggggtttatataagaaattcatagggatttac 40845940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 32352913 - 32352951
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagattta 40  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  32352913 aatttataggggtttatataagaaattcatagggattta 32352951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 13856165 - 13856204
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  13856165 aatttatagggatttatataagaaattcatagggatttac 13856204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 19649434 - 19649395
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  19649434 aatttataagggtttatataagaaattcatagcgatttac 19649395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 21853263 - 21853302
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  21853263 aatttatagggttttatataagaaattcatagggatttac 21853302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 21853344 - 21853376
Alignment:
Q  61 gcccgggatcgccgggccttagaaccgcccctg 93  Q
    ||||||| |||||||||||||||||||||||||    
T  21853344 gcccggggtcgccgggccttagaaccgcccctg 21853376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 23433967 - 23433899
Alignment:
Q  239 ttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaacagaggggat 307  Q
    ||||||| |||||||||||||  | | ||||| || ||| ||| |||||||||| ||||||||||||||    
T  23433967 ttgcaacctatcatttcaattcatgcatcaagatctcaatgaagaattgtggtggtcaacagaggggat 23433899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 44995023 - 44994991
Alignment:
Q  9 aggggtttatataagaaattcatagagatttac 41  Q
    ||||||||||||||||||||||||| |||||||    
T  44995023 aggggtttatataagaaattcatagggatttac 44994991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 54546970 - 54546998
Alignment:
Q  2 aatttataggggtttatataagaaattca 30  Q
    |||||||||||||||||||||||||||||    
T  54546970 aatttataggggtttatataagaaattca 54546998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 100 - 309
Target Start/End: Complemental strand, 10175 - 9969
Alignment:
Q  100 ttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctg 199  Q
    |||| |||||||||||||||  ||||||||||| ||||| ||   | |||||| ||| ||||| ||||||||| ||||| ||| ||||| || |||||||    
T  10175 ttcattgtattatctttgaacgcggaaaagaagtcgacagacagcgcattagtcacaattatcatgggacattaatttcagatcatgtattgatatgctg 10076  T
Q  200 gcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaaca 299  Q
    ||||| | |||| |||||||| | || || |||||||| |   |||||||||||| ||||  |||||||||||| ||| ||| |||||||||| ||||||    
T  10075 gcatggttacaatagacaagaaaatggaagttatgattgt---aacttatcatttaaattcatacttcaaggtcccaatgaagaattgtggtggtcaaca 9979  T
Q  300 gaggggataa 309  Q
    ||||||||||    
T  9978 gaggggataa 9969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 35806860 - 35806899
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35806860 aatttataggggtttatataagaaattcatagagatttac 35806899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 21525424 - 21525463
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  21525424 aatttataggggtttatataagaaattcatagggatttac 21525463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 22324662 - 22324701
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  22324662 aatttataggggtttatataagaaattcatagggatttac 22324701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 26021462 - 26021501
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  26021462 aatttataggggtttatataagaaattcatagggatttac 26021501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 42072494 - 42072533
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  42072494 aatttataggggtttatataagaaattcatagggatttac 42072533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 24065339 - 24065377
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagattta 40  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  24065339 aatttataggagtttatataagaaattcatagagattta 24065377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 16523172 - 16523211
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  16523172 aatttatagggatttatataagaaattcatagggatttac 16523211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 16819035 - 16818996
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  16819035 aatttataggggtttatataagaaattcaaggagatttac 16818996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 33
Target Start/End: Complemental strand, 33934431 - 33934400
Alignment:
Q  2 aatttataggggtttatataagaaattcatag 33  Q
    ||||||||||||||||||||||||||||||||    
T  33934431 aatttataggggtttatataagaaattcatag 33934400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 42013938 - 42013977
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  42013938 aatttataggagtttatataagaaattcatagggatttac 42013977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 42014019 - 42014052
Alignment:
Q  61 gcccgggatcgccgggccttagaaccgcccctga 94  Q
    ||||||| ||||||||||||||||||||||||||    
T  42014019 gcccggggtcgccgggccttagaaccgcccctga 42014052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 35806941 - 35806973
Alignment:
Q  61 gcccgggatcgccgggccttagaaccgcccctg 93  Q
    ||||||| |||||||||||||||||||||||||    
T  35806941 gcccggggtcgccgggccttagaaccgcccctg 35806973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 9231916 - 9231877
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9231916 aatttataggggtttatataagaaattcatagagatttac 9231877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 1727995 - 1727956
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  1727995 aatttataggggtttatataagaaattcatagggatttac 1727956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 13627606 - 13627645
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  13627606 aatttataggggtttatataagaaattcatagggatttac 13627645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 14309860 - 14309821
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  14309860 aatttatagggatttatataagaaattcatagggatttac 14309821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 24694713 - 24694674
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  24694713 aatttataggagtttatataagaaattcatagggatttac 24694674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 24497636 - 24497608
Alignment:
Q  2 aatttataggggtttatataagaaattca 30  Q
    |||||||||||||||||||||||||||||    
T  24497636 aatttataggggtttatataagaaattca 24497608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 28750712 - 28750684
Alignment:
Q  2 aatttataggggtttatataagaaattca 30  Q
    |||||||||||||||||||||||||||||    
T  28750712 aatttataggggtttatataagaaattca 28750684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 34241118 - 34241161
Alignment:
Q  51 ttggcccggagcccgggatcgccgggccttagaaccgcccctga 94  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  34241118 ttggcccggagcccggggtcgccgggccttagaaccgcccctga 34241161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 1535837 - 1535876
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  1535837 aatttataggggtttatataagaaattcatagggatttac 1535876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 25954875 - 25954914
Alignment:
Q  51 ttggcccggagcccgggatcgccgggccttagaaccgccc 90  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  25954875 ttggcccggagcccggggtcgccgggccttagaaccgccc 25954914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 36012247 - 36012208
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  36012247 aatttataggggtttatataagaaattcatagggatttac 36012208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 46583603 - 46583564
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  46583603 aatttataggggtttatataagaaattcatagggatttac 46583564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 49284423 - 49284462
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  49284423 aatttataggggtttatataagaaattcatagggatttac 49284462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 10094455 - 10094416
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  10094455 aatttataggggtttatataagaaattcagagaaatttac 10094416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 11054522 - 11054561
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    ||||||||| |||||||||||||||||||||| |||||||    
T  11054522 aatttatagaggtttatataagaaattcatagggatttac 11054561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 12792293 - 12792254
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  12792293 aatttataggggtttatataagaaattcagagaaatttac 12792254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 20818633 - 20818672
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  20818633 aatttataggagtttatataagaaattcatagggatttac 20818672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 33
Target Start/End: Original strand, 34241059 - 34241090
Alignment:
Q  2 aatttataggggtttatataagaaattcatag 33  Q
    ||||||||||||||||||||||||||||||||    
T  34241059 aatttataggggtttatataagaaattcatag 34241090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 47084078 - 47084117
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  47084078 aatttataggggtttatataagaaattcagagaaatttac 47084117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 52632584 - 52632623
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  52632584 aatttatagggatttatataagaaattcatagggatttac 52632623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Complemental strand, 16338194 - 16338161
Alignment:
Q  61 gcccgggatcgccgggccttagaaccgcccctga 94  Q
    ||||||| ||||||||||||||||||||||||||    
T  16338194 gcccggggtcgccgggccttagaaccgcccctga 16338161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 36851446 - 36851410
Alignment:
Q  5 ttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||| |||||||||| |||||||    
T  36851446 ttataggggtttatataataaattcatagggatttac 36851410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 10576739 - 10576778
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  10576739 aatttataggggtttatataagaaattcatagggatttac 10576778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 34259584 - 34259623
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  34259584 aatttataggggtttatataagaaattcatagggatttac 34259623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 34707182 - 34707221
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  34707182 aatttataggggtttatataagaaattcatagggatttac 34707221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 44164805 - 44164766
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  44164805 aatttataggggtttatataagaaattcatagaaatttac 44164766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 24320442 - 24320400
Alignment:
Q  51 ttggcccggagcccgggatcgccgggccttagaaccgcccctg 93  Q
    ||||||||||||||||| ||| |||||||||||||||||||||    
T  24320442 ttggcccggagcccgggttcgtcgggccttagaaccgcccctg 24320400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 33
Target Start/End: Complemental strand, 19334622 - 19334591
Alignment:
Q  2 aatttataggggtttatataagaaattcatag 33  Q
    ||||||||||||||||||||||||||||||||    
T  19334622 aatttataggggtttatataagaaattcatag 19334591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 29238205 - 29238166
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  29238205 aatttttaggggtttatataagaaattcatagggatttac 29238166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 33
Target Start/End: Complemental strand, 29556001 - 29555970
Alignment:
Q  2 aatttataggggtttatataagaaattcatag 33  Q
    ||||||||||||||||||||||||||||||||    
T  29556001 aatttataggggtttatataagaaattcatag 29555970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 33
Target Start/End: Complemental strand, 32876592 - 32876561
Alignment:
Q  2 aatttataggggtttatataagaaattcatag 33  Q
    ||||||||||||||||||||||||||||||||    
T  32876592 aatttataggggtttatataagaaattcatag 32876561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 33057719 - 33057680
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  33057719 aatttataggggattatataagaaattcatagggatttac 33057680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 44164724 - 44164692
Alignment:
Q  61 gcccgggatcgccgggccttagaaccgcccctg 93  Q
    ||||||| |||||||||||||||||||||||||    
T  44164724 gcccggggtcgccgggccttagaaccgcccctg 44164692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 10081211 - 10081250
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  10081211 aatttataggggtttatataagaaattcatagggatttac 10081250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 23218551 - 23218590
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  23218551 aatttataggggtttatataagaaattcatagggatttac 23218590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 37169095 - 37169056
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  37169095 aatttataggggtttatataagaaattcatagggatttac 37169056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 38397664 - 38397703
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  38397664 aatttataggggtttatataagaaattcatagggatttac 38397703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 23218632 - 23218664
Alignment:
Q  61 gcccgggatcgccgggccttagaaccgcccctg 93  Q
    |||||||||||||||||||||||||||||||||    
T  23218632 gcccgggatcgccgggccttagaaccgcccctg 23218664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 6257472 - 6257433
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  6257472 aatttataggggtttgtataagaaattcatagggatttac 6257433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 8457025 - 8456986
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  8457025 aatttatagggggttatataagaaattcatagggatttac 8456986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 16618632 - 16618593
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  16618632 aatttataggagtttatataagaaattcatagggatttac 16618593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 33
Target Start/End: Complemental strand, 39862549 - 39862518
Alignment:
Q  2 aatttataggggtttatataagaaattcatag 33  Q
    ||||||||||||||||||||||||||||||||    
T  39862549 aatttataggggtttatataagaaattcatag 39862518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 95
Target Start/End: Complemental strand, 16618551 - 16618517
Alignment:
Q  61 gcccgggatcgccgggccttagaaccgcccctgat 95  Q
    ||||||| |||||||||||||||||||||||||||    
T  16618551 gcccggggtcgccgggccttagaaccgcccctgat 16618517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 9738045 - 9738008
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagattt 39  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  9738045 aatttatagggatttatataagaaattcatagggattt 9738008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Complemental strand, 37169014 - 37168981
Alignment:
Q  61 gcccgggatcgccgggccttagaaccgcccctga 94  Q
    ||||||| ||||||||||||||||||||||||||    
T  37169014 gcccggggtcgccgggccttagaaccgcccctga 37168981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 6257391 - 6257359
Alignment:
Q  61 gcccgggatcgccgggccttagaaccgcccctg 93  Q
    ||||||| |||||||||||||||||||||||||    
T  6257391 gcccggggtcgccgggccttagaaccgcccctg 6257359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 39862468 - 39862436
Alignment:
Q  61 gcccgggatcgccgggccttagaaccgcccctg 93  Q
    ||||||| |||||||||||||||||||||||||    
T  39862468 gcccggggtcgccgggccttagaaccgcccctg 39862436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 14186500 - 14186461
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  14186500 aatttataggggtttatataagaaattcatagggatttac 14186461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 14942106 - 14942067
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  14942106 aatttataggggtttatataagaaattcatagggatttac 14942067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 29846508 - 29846547
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  29846508 aatttataggggtttatataagaaattcatagggatttac 29846547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 42769820 - 42769781
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  42769820 aatttataggggtttatataagaaattcatagggatttac 42769781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 2888107 - 2888146
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  2888107 aatttataggagtttatataaaaaattcatagagatttac 2888146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 6318520 - 6318481
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  6318520 aatttatagggatttatataagaaattcatagggatttac 6318481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 33
Target Start/End: Original strand, 19181614 - 19181645
Alignment:
Q  2 aatttataggggtttatataagaaattcatag 33  Q
    ||||||||||||||||||||||||||||||||    
T  19181614 aatttataggggtttatataagaaattcatag 19181645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 1387350 - 1387312
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagattta 40  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  1387350 aatttataggggtttatctaagaaattcatagggattta 1387312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 40277269 - 40277237
Alignment:
Q  61 gcccgggatcgccgggccttagaaccgcccctg 93  Q
    ||||||| |||||||||||||||||||||||||    
T  40277269 gcccggggtcgccgggccttagaaccgcccctg 40277237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 42769739 - 42769707
Alignment:
Q  61 gcccgggatcgccgggccttagaaccgcccctg 93  Q
    ||||||| |||||||||||||||||||||||||    
T  42769739 gcccggggtcgccgggccttagaaccgcccctg 42769707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 3346852 - 3346891
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  3346852 aatttataggggtttatataagaaattcatagggatttac 3346891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 29149610 - 29149571
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  29149610 aatttataggggtttatataagaaattcatagggatttac 29149571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 47022768 - 47022807
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  47022768 aatttataggagtttatataagaaattcatagagatttac 47022807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 49902535 - 49902573
Alignment:
Q  3 atttataggggtttatataagaaattcatagagatttac 41  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  49902535 atttataggggtttatataagaaattcatagggatttac 49902573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 5975054 - 5975093
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  5975054 aatttataggggtttatataagaaattcttagggatttac 5975093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 7742841 - 7742802
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  7742841 aatttataggggtttatataagaaattcataaggatttac 7742802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 37189706 - 37189745
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  37189706 aatttatagagatttatataagaaattcatagagatttac 37189745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 33
Target Start/End: Original strand, 38859917 - 38859948
Alignment:
Q  2 aatttataggggtttatataagaaattcatag 33  Q
    ||||||||||||||||||||||||||||||||    
T  38859917 aatttataggggtttatataagaaattcatag 38859948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 33
Target Start/End: Original strand, 42456638 - 42456669
Alignment:
Q  2 aatttataggggtttatataagaaattcatag 33  Q
    ||||||||||||||||||||||||||||||||    
T  42456638 aatttataggggtttatataagaaattcatag 42456669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 48392468 - 48392429
Alignment:
Q  2 aatttataggggtttatataagaaattcatagagatttac 41  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  48392468 aatttatagggatttatataagaaattcatagggatttac 48392429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 7742760 - 7742728
Alignment:
Q  61 gcccgggatcgccgggccttagaaccgcccctg 93  Q
    ||||||| |||||||||||||||||||||||||    
T  7742760 gcccggggtcgccgggccttagaaccgcccctg 7742728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 10155997 - 10155965
Alignment:
Q  61 gcccgggatcgccgggccttagaaccgcccctg 93  Q
    ||||||| |||||||||||||||||||||||||    
T  10155997 gcccggggtcgccgggccttagaaccgcccctg 10155965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 42517275 - 42517243
Alignment:
Q  61 gcccgggatcgccgggccttagaaccgcccctg 93  Q
    ||||||| |||||||||||||||||||||||||    
T  42517275 gcccggggtcgccgggccttagaaccgcccctg 42517243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 47022849 - 47022881
Alignment:
Q  61 gcccgggatcgccgggccttagaaccgcccctg 93  Q
    ||||||| |||||||||||||||||||||||||    
T  47022849 gcccggggtcgccgggccttagaaccgcccctg 47022881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 54666 - 54699
Alignment:
Q  61 gcccgggatcgccgggccttagaaccgcccctga 94  Q
    ||||||| ||||||||||||||||||||||||||    
T  54666 gcccggggtcgccgggccttagaaccgcccctga 54699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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