View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_high_10 (Length: 542)
Name: NF1148_high_10
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 49 - 419
Target Start/End: Original strand, 4474652 - 4475016
Alignment:
| Q |
49 |
gaaggaagaaaaatatgagtttaatttgctaagatgttttgtgaggggaatatggaatttggttgagctagctatagagattatagttggctcaaagatg |
148 |
Q |
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| T |
4474652 |
gaaggaagaaaaatatgagttt-----gctaagatgttttgtgaggggaatatggaatttggttgagctagctatagagattatagttggctcaaagatg |
4474746 |
T |
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| Q |
149 |
ttatgatnnnnnnnnnnnnnnnggtgtaggggtttttaaaggacgaaagaagggtatggtaatgttggtgaacaattttgagaaagaaaatttataattc |
248 |
Q |
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| T |
4474747 |
ttatgatgagagagagagagagggtgtaggggtttttaaaggacgaaagaagggtatggtaatgttggtgaacaattttgagaaagaaaatttataattc |
4474846 |
T |
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| Q |
249 |
aatgtaataaaataatatgtggtgccaactttgagaaagaaatatacaactcaatataatatattaatttttagtggcaataaatatttgataaagcaag |
348 |
Q |
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| T |
4474847 |
aatgtaataaaataatatgtggtgccaactttgagaaagaaatatacaactcaatataatata-taatttttagtggcaataaatatttgataaagcaag |
4474945 |
T |
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| Q |
349 |
atgcaactcgtattctacataaatgtgagtcaattaaatcatgcaaggggtcttaacggtggataatacac |
419 |
Q |
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| T |
4474946 |
atgcaactcgtattctacataaatgtgagtcaattaaatcatgcaaggggtcttaacggtggataaaacac |
4475016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 525
Target Start/End: Original strand, 4475124 - 4475163
Alignment:
| Q |
486 |
ctttcccttaattcatgtcactaaatttagtttttcctta |
525 |
Q |
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| T |
4475124 |
ctttcccttaattcatgtcactaaatttagtttttcctta |
4475163 |
T |
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