View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_high_12 (Length: 519)
Name: NF1148_high_12
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 13 - 490
Target Start/End: Complemental strand, 2387409 - 2386924
Alignment:
| Q |
13 |
aatatccacctaaattttgattaaaaaagaatatgaaacnnnnnnncatgtaatctacagaagaaaaattttaccataacttttcattttactactattc |
112 |
Q |
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| T |
2387409 |
aatatccacctaaattttgattaaaaaagaatatgaaactttttttcatgtaatctacagaagaaaatttttaccataacttttcattttactactattc |
2387310 |
T |
|
| Q |
113 |
aatttctctaagcaaagactgtatcatatcgtgtccgcgttcgagtctgtgctactatatcatatcgtgtccgcatgtgagtctgtgcttcatagtttac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||| ||| ||||||||||||||||||| |
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| T |
2387309 |
aatttctctaagcaaagactgtatcatatcgtgtccgcgtccgagtctgtgctactgtatcatattgtgtccgcatctgaatctgtgcttcatagtttac |
2387210 |
T |
|
| Q |
213 |
aaacaacagtagccaaattgataccgaacataagtaaacacatacacataaaagttgtcactatatctgtaacagtatagttaatagataaggcaataat |
312 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2387209 |
aaacaacagtagccaaattgatgccaaacataagtaaacacatacacataaaagttgtcactatatctataacagtatagttaatagataaggcaataat |
2387110 |
T |
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| Q |
313 |
gcctctatgattataaaaaattcatatcttactttacttagagaaaaagtaaagcacttcttatttt--------ttcaattaagcaccatatcctaaaa |
404 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
2387109 |
gcctctatgattataaaaatttcatatcttactttacttagagaaaaagtaaagcacttcttattttttatgctattcaattaagcaccatatgctaaaa |
2387010 |
T |
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| Q |
405 |
gtatataataattgcaaaaatccctcagtagaatgaactgaagttaccaaccaattatatagacatgaaaccatgattatgatgtc |
490 |
Q |
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| T |
2387009 |
gtatataataattgcaaaaatccctcagtagaatgaactgaagttaccaaccaattatatagacatgaaaccatgattatgatgtc |
2386924 |
T |
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