View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1148_high_14 (Length: 501)

Name: NF1148_high_14
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1148_high_14
NF1148_high_14
[»] chr1 (4 HSPs)
chr1 (30-501)||(18344920-18345391)
chr1 (32-477)||(18339786-18340231)
chr1 (224-432)||(18303657-18303865)
chr1 (38-124)||(18303480-18303566)


Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 30 - 501
Target Start/End: Complemental strand, 18345391 - 18344920
Alignment:
Q  30 ccctcttagatgacccactgaaccaatactttgcacttatctcccaacgttgtattccgctcttctcatttcaattcatttataactacctttttaaaaa 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18345391 ccctcttagatgacccactgaaccaatactttgcacttatctcccaacgttgtattccactcttctcatttcaattcatttataactacctttttaaaaa 18345292  T
Q  130 tcaactaaaatcatttgcaaattcgtctgaatttaacctactataccctagctatattgagattctctcagaggcagaaaatctcaatatacgatataat 229  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18345291 tcaactaaaatcatttgcaaattcgtctgaatttaacctactgtaccctagctatattgagattctctcagaggcagaaaatctcaatatacggtataat 18345192  T
Q  230 gctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaattttttatcttgaaccggaaacatacaaatgttgtgt 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18345191 gctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaattttttatcttgaaccggaaacatacaaaggttgtgt 18345092  T
Q  330 tgagagatcaaaagctatggaacaagtttcagattccatgtacaaataagtattattgttacccagaggagcattatttttcgactcttctatcaatgga 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18345091 tgagagatcaaaagctatggaacaagtttcagattccatgtacaaataagtattattgttatccagaggagcattatttttcgactcttctatcaatgga 18344992  T
Q  430 ggatttgaaggggtatactggttttacactgactagagttaattggaccggtgctgtctctgctcctccaca 501  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  18344991 ggatttgaaggggtgtactggttttacactgactagagttaattggaccggtgctgtctatggtcatccaca 18344920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 32 - 477
Target Start/End: Complemental strand, 18340231 - 18339786
Alignment:
Q  32 ctcttagatgacccactgaaccaatactttgcacttatctcccaacgttgtattccgctcttctcatttcaattcatttataactacctttttaaaaatc 131  Q
    ||||||||||| || || |||||||||||||| ||  | || ||||  ||| |||||||||| || |||| |||| ||||||||||||||||||||||||    
T  18340231 ctcttagatgatccgcttaaccaatactttgccctagtttctcaacactgtgttccgctcttgtcgtttcgattcgtttataactacctttttaaaaatc 18340132  T
Q  132 aactaaaatcatttgcaaattcgtctgaatttaacctactataccctagctatattgagattctctcagaggcagaaaatctcaatatacgatataatgc 231  Q
    |  |||  || || || | ||  ||||| |||||| | || |||||||||| ||||||||||||||| ||||     |||||| |    || ||||| ||    
T  18340131 agttaatgtcgttagcgagtttctctgactttaacttgctttaccctagctttattgagattctctctgaggatccgaatctctacgagcgttataacgc 18340032  T
Q  232 tcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaattttttatcttgaaccggaaacatacaaatgttgtgttg 331  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||  |||| ||| |||| |||||| ||    
T  18340031 tcgtggagagaatgttatgttgccggaggttccatttgaggattttcgggttggttcgcagttttttatcttgaataggaagcatgcaaaggttgtggtg 18339932  T
Q  332 agagatcaaaagctatggaacaagtttcagattccatgtacaaataagtattattgttacccagaggagcattatttttcgactcttctatcaatggagg 431  Q
    |||||| | ||||||||||| ||||||| |||||| |||  ||||  | ||| |||||| ||||| |||||||||||| | |||||| | || |||||||    
T  18339931 agagattataagctatggaagaagtttcggattccttgtgtaaatttggattcttgttatccagaagagcattattttcccactcttttgtctatggagg 18339832  T
Q  432 atttgaaggggtatactggttttacactgactagagttaattggac 477  Q
    || |||| |||| |||||||||||||||||| ||||||||||||||    
T  18339831 atctgaatgggtgtactggttttacactgacgagagttaattggac 18339786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 224 - 432
Target Start/End: Original strand, 18303657 - 18303865
Alignment:
Q  224 tataatgctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaattttttatcttgaaccggaaacatacaaatg 323  Q
    ||||||||||||||| || |||||||||||||||||||| ||||  ||||||||||    || || ||||| |||||| |||||||||||||| |||| |    
T  18303657 tataatgctcgtggaaaggatgtaatgatgccggaggtttcattcaaggattttcgcaaaggctcgcaattctttatcctgaaccggaaacatgcaaagg 18303756  T
Q  324 ttgtgttgagagatcaaaagctatggaacaagtttcagattccatgtacaaataagtattattgttacccagaggagcattatttttcgactcttctatc 423  Q
    ||||  || ||||||||||| | ||||| ||||||| ||||||||||| | ||| |||||  |||||||| || |||||||| ||| |||||||||||||    
T  18303757 ttgttctgcgagatcaaaagttgtggaagaagtttcggattccatgtatagatacgtattcctgttacccggaagagcattactttccgactcttctatc 18303856  T
Q  424 aatggagga 432  Q
     ||||||||    
T  18303857 gatggagga 18303865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 18303480 - 18303566
Alignment:
Q  38 gatgacccactgaaccaatactttgcactta-tctcccaacgttgtattccgctcttctcatttcaattcatttataactaccttttt 124  Q
    ||||||||||  |||||||||||||| |||| ||||||||| ||||||||| |||||||| |||| |||  ||||||||| |||||||    
T  18303480 gatgacccacataaccaatactttgc-cttagtctcccaacattgtattccactcttctcgtttcgatttgtttataactcccttttt 18303566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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