View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1148_high_20 (Length: 457)

Name: NF1148_high_20
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1148_high_20
NF1148_high_20
[»] chr6 (12 HSPs)
chr6 (10-428)||(6520070-6520489)
chr6 (59-428)||(6465589-6465959)
chr6 (38-365)||(6528518-6528846)
chr6 (26-365)||(6472565-6472902)
chr6 (158-365)||(6515755-6515960)
chr6 (271-388)||(6496969-6497087)
chr6 (271-388)||(6461585-6461703)
chr6 (264-363)||(13035499-13035599)
chr6 (248-299)||(6526734-6526786)
chr6 (284-365)||(6457695-6457776)
chr6 (285-350)||(6505817-6505882)
chr6 (256-365)||(1841638-1841748)
[»] chr7 (2 HSPs)
chr7 (50-124)||(9664846-9664920)
chr7 (334-406)||(9665127-9665199)
[»] chr4 (2 HSPs)
chr4 (50-124)||(13535870-13535944)
chr4 (334-406)||(13536151-13536223)
[»] chr1 (1 HSPs)
chr1 (253-428)||(35231185-35231364)


Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 10 - 428
Target Start/End: Original strand, 6520070 - 6520489
Alignment:
Q  10 tcataggtatatagctacttctgaggagttttctggcattattagaatagctttgttgccggattctgattcaaaaactgaagctgttcttgataggttc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  6520070 tcataggtatatagctacttctgaggagttttctggcattattagaatagctttgtttccggattctgattcaaaaactgaagctgctcttgataggttc 6520169  T
Q  110 agtagttgttaccctgtgagcggtgatgctgttttcacaacaccattctgtcttgagtataaatggcagaagaagggttcaggtgatttgctgctgttag 209  Q
    ||| |||||||||||||||| ||| |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  6520170 agttgttgttaccctgtgagtggtaatgctgtttttacaacacaattctgtgttgagtataaatggcagaagaagggttcaggtgatttgctactgttag 6520269  T
Q  210 cacaccctttacatattcaacttttgtgtgacactattgattgtaatgttactattttgagtgattttaagta-aaaagcattgatggagaccttgttgg 308  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6520270 cacaccctttacatattcaacttttgtgtgacactattgattgtgatgttactattttgagtgattttaagtataaaagcattgatggagaccttgttgg 6520369  T
Q  309 tgtcatcggtgattcatggttgttgaaaactgatcctgtttctgtaacttggcattcttcaaatggtgttaagaaagaataccataaagaaattgttttg 408  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  6520370 tgtcattggtgattcatggtttttgaaaactgatcctgtttctgtaacttggcattcttcaaatggtgttaagaaagaataccataaagaaattgtttca 6520469  T
Q  409 gcacttttgaaagatgttga 428  Q
    ||||||||||||||||||||    
T  6520470 gcacttttgaaagatgttga 6520489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 59 - 428
Target Start/End: Complemental strand, 6465959 - 6465589
Alignment:
Q  59 gctttgttgccggattctgattcaaaaactgaagctgttcttgataggttcagtagttgttaccctgtgagcggtgatgctgttttcacaacaccattct 158  Q
    ||||||||||| ||||||||||  ||   ||||| ||||||||| ||||| |||  |||||||||| |  | |||||||||||||| |||| |||||| |    
T  6465959 gctttgttgcctgattctgatttcaagcatgaagatgttcttgacaggtttagttcttgttaccctttatgtggtgatgctgtttttacaaaaccatttt 6465860  T
Q  159 gtcttgagtataaatggcagaagaagggttcaggtgatttgctgctgttagcacaccctttacatattcaacttttgtgtgacactattgattgt---aa 255  Q
    || |||||||||||||| ||||||| ||||  || |||||  |  |||||||||| ||| | ||| |||| ||||||| |||   || |||||||   ||    
T  6465859 gtgttgagtataaatgggagaagaaaggttggggggatttattattgttagcacatcctcttcatgttcagcttttgtatga---tagtgattgtgataa 6465763  T
Q  256 tgttactattttgagtgattttaagtaaa-aagcattgatggagaccttgttggtgtcatcggtgattcatggttgttgaaaactgatcctgtttctgta 354  Q
    ||||||| |||||| |||||||||||| | ||| |||||||| || |||||||||||  | ||||||||||||||||||||||| ||||| |||||||||    
T  6465762 tgttactgttttgaatgattttaagtatagaagtattgatggtgatcttgttggtgttgttggtgattcatggttgttgaaaaccgatccggtttctgta 6465663  T
Q  355 acttggcattcttcaaatggtgttaagaaagaataccataaagaaattgttttggcacttttgaaagatgttga 428  Q
    |||||||||||| | || ||||||||  ||||||  ||| | || |||||||  |  |||||||||||||||||    
T  6465662 acttggcattctactaagggtgttaaagaagaatctcatgatgagattgtttccgttcttttgaaagatgttga 6465589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 38 - 365
Target Start/End: Complemental strand, 6528846 - 6528518
Alignment:
Q  38 ttttctggcattattagaatagctttgttgccggattctgattcaaaaactgaagctgttcttgataggttcagtagttgttaccctgtgagcggtgatg 137  Q
    ||||||||||  ||| |||||||||| |||||||||||||||||||||  ||| ||||||||||| ||||   ||   ||||| ||||||   |||||||    
T  6528846 ttttctggcacaattcgaatagctttattgccggattctgattcaaaacatgaggctgttcttgacaggtattgtttctgttatcctgtgtcaggtgatg 6528747  T
Q  138 ctgttttcacaacaccattctgtcttgagtataaatggcagaagaagggttcaggtgatttgctgctgttagcacaccctttacatattcaacttttgtg 237  Q
    || |  ||| |  |||||| ||| |||||||||||||| ||||||||||||  ||||||||| || |||||||||||||| | ||| |||| ||||| |     
T  6528746 ctatactcagagaaccattttgtgttgagtataaatgggagaagaagggttggggtgatttgttgatgttagcacaccctcttcatcttcagcttttatc 6528647  T
Q  238 tgacactattgattgt---aatgttactattttgagtgattttaagta-aaaagcattgatggagaccttgttggtgtcatcggtgattcatggttgttg 333  Q
    |||    |  ||||||   ||| ||||| ||||||||||||| ||||| |||||||||||||| || ||||||||  |  | | |||||| ||| | |||    
T  6528646 tga---gaaagattgtaagaatattactgttttgagtgatttcaagtataaaagcattgatggcgatcttgttggcattgttgctgattcgtggattttg 6528550  T
Q  334 aaaactgatcctgtttctgtaacttggcattc 365  Q
    |||||||||| ||||||| | |||||| ||||    
T  6528549 aaaactgatcatgtttctattacttggtattc 6528518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 26 - 365
Target Start/End: Original strand, 6472565 - 6472902
Alignment:
Q  26 acttctgaggagttttctggcattattagaatagctttgttgccggattctgattcaaaaactgaagctgttcttgataggttcagtagttgttaccctg 125  Q
    ||||||||||  ||||| ||||| ||| | ||||||||||||||||||||  |||||||||  |||| ||| ||||||| || ||||  ||||||||||     
T  6472565 acttctgaggccttttccggcatgattcggatagctttgttgccggattccaattcaaaaaacgaagatgtccttgataagtacagttcttgttaccctt 6472664  T
Q  126 tgagcggtgatgctgttttcacaacaccattctgtcttgagtataaatggcagaagaagggttcaggtgatttgctgctgttagcacaccctttacatat 225  Q
    ||   ||||| ||| |  ||| |  ||| ||  || |||||||||| |   ||||||| |||||||||||||| ||| |||||||||||||| | ||| |    
T  6472665 tgtcaggtgaagctatgctcaaagaaccgtttagtgttgagtataagtttgagaagaaaggttcaggtgatttactgatgttagcacaccctcttcatct 6472764  T
Q  226 tcaacttttgtgtgacactattgattgtaatgttactattttgagtgattttaagta-aaaagcattgatggagaccttgttggtgtcatcggtgattca 324  Q
     || ||| ||| | | | |   ||||  |||| |||  ||||||| ||||||||||| |||||||||||||| || |||||||| ||  | |||||||||    
T  6472765 ccagcttatgtctaaaagt---gattccaatgctacctttttgagggattttaagtataaaagcattgatggtgaacttgttggagttgttggtgattca 6472861  T
Q  325 tggttgttgaaaactgatcctgtttctgtaacttggcattc 365  Q
    ||| | |||||||| |||||||||||| | |||||||||||    
T  6472862 tggcttttgaaaacagatcctgtttctattacttggcattc 6472902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 158 - 365
Target Start/End: Original strand, 6515755 - 6515960
Alignment:
Q  158 tgtcttgagtataaatggcagaagaagggttcaggtgatttgctgctgttagcacaccctttacatattcaacttttgtgtgacactattgattgtaatg 257  Q
    |||||||||||||| |   ||||||| ||||||||||||||| |  |||||||||||||| | |||||||||||||| | | | | ||   |  || |||    
T  6515755 tgtcttgagtataagtttgagaagaaaggttcaggtgatttgttattgttagcacaccctcttcatattcaacttttatctaaaagta---aaagtgatg 6515851  T
Q  258 ttactattttgagtgattttaagtaa-aaagcattgatggagaccttgttggtgtcatcggtgattcatggttgttgaaaactgatcctgtttctgtaac 356  Q
    | ||| |||||  |||||| |||||  ||||||||||||||||||||||||||||  | |||||||||||| | |||||||| |||||  ||||||||||    
T  6515852 taactgttttggatgatttcaagtatcaaagcattgatggagaccttgttggtgttgttggtgattcatggattttgaaaaccgatccgatttctgtaac 6515951  T
Q  357 ttggcattc 365  Q
    |||||||||    
T  6515952 ttggcattc 6515960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 271 - 388
Target Start/End: Complemental strand, 6497087 - 6496969
Alignment:
Q  271 tgattttaagtaa-aaagcattgatggagaccttgttggtgtcatcggtgattcatggttgttgaaaactgatcctgtttctgtaacttggcattcttca 369  Q
    ||||||||||||  ||||||||||||||||||||||||||||  | |||||||||||| | ||| ||||||||||||||| ||| || |||| |||  |     
T  6497087 tgattttaagtatcaaagcattgatggagaccttgttggtgttgttggtgattcatggcttttggaaactgatcctgtttatgttacatggctttcaacc 6496988  T
Q  370 aatggtgttaagaaagaat 388  Q
    |||||||| ||||||||||    
T  6496987 aatggtgtgaagaaagaat 6496969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 271 - 388
Target Start/End: Original strand, 6461585 - 6461703
Alignment:
Q  271 tgattttaagtaa-aaagcattgatggagaccttgttggtgtcatcggtgattcatggttgttgaaaactgatcctgtttctgtaacttggcattcttca 369  Q
    ||||||||||||  ||||||||||||||||||||||||||||  | |||||||||||| | ||| ||||||||||||||  ||| || |||| |||  |     
T  6461585 tgattttaagtatcaaagcattgatggagaccttgttggtgttgttggtgattcatggcttttggaaactgatcctgttgatgttacatggctttcaacg 6461684  T
Q  370 aatggtgttaagaaagaat 388  Q
    |||||||| ||||||||||    
T  6461685 aatggtgtgaagaaagaat 6461703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 363
Target Start/End: Original strand, 13035499 - 13035599
Alignment:
Q  264 ttttgagtgattttaagta-aaaagcattgatggagaccttgttggtgtcatcggtgattcatggttgttgaaaactgatcctgtttctgtaacttggca 362  Q
    |||| ||||||| |||||| |||||||||||||| || |||||||| ||  | |||||||||||| | |||||||| ||| |||||||||||||||||||    
T  13035499 tttttagtgattataagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaaccgattctgtttctgtaacttggca 13035598  T
Q  363 t 363  Q
    |    
T  13035599 t 13035599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 6526786 - 6526734
Alignment:
Q  248 gattgtaatgttactattttgagtgattttaagta-aaaagcattgatggaga 299  Q
    ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||    
T  6526786 gattgtaatgttactgttttgagtgattttaagtataaacgcattgatggaga 6526734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 365
Target Start/End: Complemental strand, 6457776 - 6457695
Alignment:
Q  284 aaagcattgatggagaccttgttggtgtcatcggtgattcatggttgttgaaaactgatcctgtttctgtaacttggcattc 365  Q
    |||||||||| || || |||||||||||  | || || |||||||| ||||||||| ||||||||||||| || ||||||||    
T  6457776 aaagcattgacggcgagcttgttggtgttgttggagactcatggttattgaaaactcatcctgtttctgttacatggcattc 6457695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 285 - 350
Target Start/End: Complemental strand, 6505882 - 6505817
Alignment:
Q  285 aagcattgatggagaccttgttggtgtcatcggtgattcatggttgttgaaaactgatcctgtttc 350  Q
    |||||||||||| ||||||||||||||  | |||||||||||| | |||||||| || ||||||||    
T  6505882 aagcattgatggtgaccttgttggtgttgttggtgattcatggattttgaaaacagaacctgtttc 6505817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 365
Target Start/End: Original strand, 1841638 - 1841748
Alignment:
Q  256 tgttactattttgagtgattttaagta-aaaagcattgatggagaccttgttggtgtcatcggtgattcatggttgttgaaaactgatcctgtttctgta 354  Q
    ||||||| |||||||| |||||||||| ||||||||| ||| ||| |||||   |||  | |||||||||||| | |||||||| |||| || |||  ||    
T  1841638 tgttactgttttgagttattttaagtataaaagcatttatgcagagcttgtcaatgttgttggtgattcatggattttgaaaaccgatcatgcttccata 1841737  T
Q  355 acttggcattc 365  Q
    |||||||||||    
T  1841738 acttggcattc 1841748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 9664846 - 9664920
Alignment:
Q  50 attagaatagctttgttgccggattctgattcaaaaactgaagctgttcttgataggttcagtagttgttaccct 124  Q
    ||||| || |||||||||||||||||||||||||||| ||||||||||||||| | ||| || | ||||||||||    
T  9664846 attaggattgctttgttgccggattctgattcaaaaaatgaagctgttcttgacaagtttagcacttgttaccct 9664920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 406
Target Start/End: Original strand, 9665127 - 9665199
Alignment:
Q  334 aaaactgatcctgtttctgtaacttggcattcttcaaatggtgttaagaaagaataccataaagaaattgttt 406  Q
    ||||||||||| ||||||||||| ||||  ||| ||||||| || ||| ||||| ||||||||||||| ||||    
T  9665127 aaaactgatccggtttctgtaacatggctatctacaaatggcgtgaaggaagaacaccataaagaaatcgttt 9665199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 13535870 - 13535944
Alignment:
Q  50 attagaatagctttgttgccggattctgattcaaaaactgaagctgttcttgataggttcagtagttgttaccct 124  Q
    ||||| || |||||||||||||||||||||||||||| ||||||||||||||| | ||| || | ||||||||||    
T  13535870 attaggattgctttgttgccggattctgattcaaaaaatgaagctgttcttgacaagtttagcacttgttaccct 13535944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 406
Target Start/End: Original strand, 13536151 - 13536223
Alignment:
Q  334 aaaactgatcctgtttctgtaacttggcattcttcaaatggtgttaagaaagaataccataaagaaattgttt 406  Q
    ||||||||||| ||||||||||| ||||  ||| ||||||| || ||| ||||| ||||||||||||| ||||    
T  13536151 aaaactgatccggtttctgtaacatggctatctacaaatggcgtgaaggaagaacaccataaagaaatcgttt 13536223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 428
Target Start/End: Original strand, 35231185 - 35231364
Alignment:
Q  253 taatgttactattttgagtgattttaagta-aaaagcattgatggagaccttgttggtgtcatcg---gtgattcatggttgttgaaaactgatcctgtt 348  Q
    |||||||||| |||||| |||||||||||| |||||||||||| | || |||||||||||  | |   ||||| ||||| | ||||||||  || |||||    
T  35231185 taatgttactgttttgaatgattttaagtataaaagcattgatagtgaacttgttggtgttgttggttgtgatccatggcttttgaaaaccaattctgtt 35231284  T
Q  349 tctgtaacttggcattcttcaaatggtgttaagaaagaataccataaagaaattgttttggcacttttgaaagatgttga 428  Q
    | |||||||||||| | |  ||||||||||||  ||||||  ||| | |||||||||| ||  | |||||| ||||||||    
T  35231285 tttgtaacttggcactttataaatggtgttaaagaagaattacattatgaaattgtttcggttcctttgaatgatgttga 35231364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University