View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_high_22 (Length: 441)
Name: NF1148_high_22
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 30 - 429
Target Start/End: Original strand, 54198203 - 54198601
Alignment:
| Q |
30 |
gtcatgggaccaagaattatgtaacaaaaattgtatgatataattagtcnnnnnnncaattgtatcatataaattgtgtttcttaaaaaactaataataa |
129 |
Q |
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| T |
54198203 |
gtcatgggaccaagaattatgtaacaaaaattgtatgatataattagtcaaaaaaacaattgtatcatataaattgtgtttcttaaaaaactaataataa |
54198302 |
T |
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| Q |
130 |
tgcacaaaccatgtacaagtataaaacgataaaaaccatatacaagcaaatcttccaaagggccggcttaaattttcactattatatgctcacttatttg |
229 |
Q |
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| T |
54198303 |
tgcacaaaccatgtacaagtataaaacgataaaaaccatatacaagcaaatcttccaaagggccggcttaaattttcactattatatgctcacttatttg |
54198402 |
T |
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| Q |
230 |
tcttgttatcnnnnnnnnnnnngttgacacaaattatgtcttgttttctgaagaggaagaatacgttaaaatcataaagcatatgg-nnnnnnnncatcg |
328 |
Q |
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| T |
54198403 |
tcttgttatcttttttatttttgttgacacaaattatgtcttgttttctgaagaggaagaatacgttaaaatcataaagcatatggaaaaaaaaacatcg |
54198502 |
T |
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| Q |
329 |
ttttctcaaaccgcatatatactatcagtagcaaggttaattagcttaaccacaaaattaatattaatattaatataaactacactatagactgactaga |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
54198503 |
ttttctcaaaccgcatatatactatcagtagcaaggttaattagcttaaccacaaaatta--attaatattaatataaactacactatagactgactaga |
54198600 |
T |
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