View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_high_25 (Length: 407)
Name: NF1148_high_25
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 30 - 398
Target Start/End: Original strand, 41251099 - 41251467
Alignment:
| Q |
30 |
atactaaggataatactttgtttttaacgataagcataatcttttgttatgatactatactagagtcatgtgaaaatcattgctggctctatacattttt |
129 |
Q |
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| T |
41251099 |
atactaaggataatactttgtttttgacgataagcataatattttgttatgatactatactagagtcatgtgaaaatcattgctggctctatacattttt |
41251198 |
T |
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| Q |
130 |
ccttttatacgcattttatagttagatcgaatatcttgaaaagaaaacacattaattattagttgctagctttacaactatatttcctataaagttttat |
229 |
Q |
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| T |
41251199 |
ccttttatacgcattttatagttagatcgaatatcttgaaaagaaaacacattaattattagttgctagctttacaactatatttcctataaagttttat |
41251298 |
T |
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| Q |
230 |
aacnnnnnnnngttcttgtttgatgaagtgaaatatgtatcttaccagaaattgtgtgtgcttcttgtgaagataggatagatcacatgtatatggacat |
329 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41251299 |
aacttttttttgttcttgtttgatgaagtgaaatatgtatcttaccagaaattgtgtgtgcttcttgtgaagataggatagatcacatgtatatggacat |
41251398 |
T |
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| Q |
330 |
attaataatattaaaatacttttctgttccattccatatgggcctcatggtttctcacgtaagaataat |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41251399 |
attaataatattaaaatacttttctgttccattccatatgggcctcatggtttctcacgtaagaataat |
41251467 |
T |
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