View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_high_31 (Length: 378)
Name: NF1148_high_31
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_high_31 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 2387263 - 2386924
Alignment:
| Q |
18 |
ctgtgctactatatcatatcgtgtccgcatgtgagtctgtgcttcatagtttacaaacaacagtagccaaattgataccgaacataagtaaacacataca |
117 |
Q |
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| T |
2387263 |
ctgtgctactgtatcatattgtgtccgcatctgaatctgtgcttcatagtttacaaacaacagtagccaaattgatgccaaacataagtaaacacataca |
2387164 |
T |
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| Q |
118 |
cataaaagttgtcactatatctgtaacagtatagttaatagataaggcaataatgcctctatgattataaaaaattcatatcttactttacttagagaaa |
217 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2387163 |
cataaaagttgtcactatatctataacagtatagttaatagataaggcaataatgcctctatgattataaaaatttcatatcttactttacttagagaaa |
2387064 |
T |
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| Q |
218 |
aagtaaagcacttcttatttt--------ttcaattaagcaccatatcctaaaagtatataataattgcaaaaatccctcagtagaatgaactgaagtta |
309 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2387063 |
aagtaaagcacttcttattttttatgctattcaattaagcaccatatgctaaaagtatataataattgcaaaaatccctcagtagaatgaactgaagtta |
2386964 |
T |
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| Q |
310 |
ccaaccaattatatagacatgaaaccatgattatgatgtc |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
2386963 |
ccaaccaattatatagacatgaaaccatgattatgatgtc |
2386924 |
T |
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