View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_high_38 (Length: 354)
Name: NF1148_high_38
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 32291615 - 32291300
Alignment:
| Q |
18 |
acatcaaaatcaaacaaccaaaaaacgtgttgtgaattgcaatgaacaggcaacacagtaagcaagcaagcataacagtagtagcaccatttccatacat |
117 |
Q |
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| T |
32291615 |
acatcaaaatcaaaaaaccaaaaa-cgtgttgtgaattgcaatgaacaggcaacacagtaagcaagcaagcataacagtagtagcaccatttccatacat |
32291517 |
T |
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| Q |
118 |
cgaagaaatgaaattaaagcgtgcatgtgttgtgtgcgtggaaacaagtttgtgtatattcatctg-cacaagttttgcttttatttgctgttttggaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32291516 |
cgaagaaatgaaattaaagcgtgcatgtgttgtgtgcgtggaaacaagtttgtgtatattcatctgccacaagttttgcttttatttgctgttttggaat |
32291417 |
T |
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| Q |
217 |
aaagtaaccgacatacaccaccactacacaacaatcaatgctgtca-cccatagttctaatctaagtatgacttcagaaccaacaaatcccccaatccga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32291416 |
aaagtaaccgacatacaccaccactacacaacaatcaatgctgtcaccccatagttctaatctaagtatgacttcagaaccaacaaatcccccaatccga |
32291317 |
T |
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| Q |
316 |
gcgtcacatatattcat |
332 |
Q |
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||||||||||||||||| |
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| T |
32291316 |
gcgtcacatatattcat |
32291300 |
T |
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