View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_high_41 (Length: 342)
Name: NF1148_high_41
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_high_41 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 8441929 - 8441598
Alignment:
| Q |
13 |
aatatattataaacgctacaatttcccttaaatttaaccatgtgggactttctttaacttaacgatgatgtttaaccttgtacgacctcttcggaagccg |
112 |
Q |
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| T |
8441929 |
aatatattataaacactacaatttccattaaatttaaccatgtgggactttcgttaacttaacgatgatgtttaaccttgtacgacctcttcggaagccg |
8441830 |
T |
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| Q |
113 |
ccagataaaggtggtaagctttatgttgtgtctcttgtggtttggactatct--gtttatttgctagttctttttgatgtattagtggcttccaaattgt |
210 |
Q |
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| T |
8441829 |
ccagataaaggtggtaagctttatgttgtgtctcttgtggtttggactatctttgtttatttgctagtgctttttggtgtattagtggcttccaagttgt |
8441730 |
T |
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| Q |
211 |
caaagttaaaataacacattatgtgtttgttggaataccaacaaagatgggttattggaaataggcaaatgatatatgaacaaccaaaaaggttgtccac |
310 |
Q |
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| T |
8441729 |
caaagttaaaataacacattatgtgtttgttggaataccaacaaagatgggttattggaaataggtaaatgatatatgaacaaccaaaaaggttgtccac |
8441630 |
T |
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| Q |
311 |
accgtctatcacgacagtttgctatacaaatt |
342 |
Q |
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| T |
8441629 |
accgtctatcacgacggtttgctatacaaatt |
8441598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 75 - 266
Target Start/End: Complemental strand, 8443441 - 8443250
Alignment:
| Q |
75 |
cgatgatgtttaaccttgtacgacctcttcggaagccgccagataaaggtggtaagctttatgttgtgtctcttgtggtttggactatct--gtttattt |
172 |
Q |
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| T |
8443441 |
cgatgatgctcaaccttgtacggcctcttcgcaagccgaaagataaaagtggtaagctttatgttgtgtctcttgtggttgggactatctctgtttattt |
8443342 |
T |
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| Q |
173 |
gctagttctttttgatgtattagtggcttccaaattgtcaaagttaaaataacacattatgtgtttgttggaataccaacaaagatgggttatt |
266 |
Q |
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| T |
8443341 |
gctagtt--ttttggtgtattaacggctttcaagttgtcaaagttaaaatatcacattatgtgtttgctggaataccaacaaagatgggttatt |
8443250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 18507852 - 18507896
Alignment:
| Q |
273 |
aggcaaatgatatatgaacaaccaaaaaggttgtccacaccgtct |
317 |
Q |
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| T |
18507852 |
aggcaaatgttatatgaacaaccaaaaaggttgtccacaccgtct |
18507896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 43268552 - 43268596
Alignment:
| Q |
273 |
aggcaaatgatatatgaacaaccaaaaaggttgtccacaccgtct |
317 |
Q |
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| T |
43268552 |
aggcaaatgttatatgaacaaccaaaaaggttgtccacaacgtct |
43268596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 32469837 - 32469798
Alignment:
| Q |
276 |
caaatgatatatgaacaaccaaaaaggttgtccacaccgt |
315 |
Q |
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| T |
32469837 |
caaatgttatatgaacaaccaaaaaggttgtccacaccgt |
32469798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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